RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7109
(236 letters)
>gnl|CDD|130056 TIGR00983, 3a0801s02tim23, mitochondrial import inner membrane
translocase subunit tim23. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 149
Score = 111 bits (278), Expect = 6e-31
Identities = 47/129 (36%), Positives = 66/129 (51%), Gaps = 2/129 (1%)
Query: 22 LDFDPAYLPKTSQPEFIFPEGASKQRGRFELAFSQIGGSCMLGAAIGGAEGFYKGLRNTT 81
LD DP YL + E GA+ RG FE G + G AIG G GL+ T
Sbjct: 4 LDKDPEYL-VQEEDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQ 62
Query: 82 LEGQTGKLRRTQLLNHIMKHGSATASTLGTIAVMYSSFGVLLQTTRGTDDDFNTLTAATA 141
KLR Q+LN + + G +TLG +A++Y+ +++ TRG DDFN++ A
Sbjct: 63 -SMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEATRGKHDDFNSVAAGAL 121
Query: 142 TGMLFRSTG 150
TG L++ST
Sbjct: 122 TGALYKSTR 130
>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family. The pre-protein
translocase of the mitochondrial outer membrane (Tom)
allows the import of pre-proteins from the cytoplasm.
Tom forms a complex with a number of proteins, including
Tim17. Tim17 and Tim23 are thought to form the
translocation channel of the inner membrane. This family
includes Tim17, Tim22 and Tim23. This family also
includes Pmp24 a peroxisomal protein. The involvement of
this domain in the targeting of PMP24 remains to be
proved. PMP24 was known as Pmp27 in.
Length = 128
Score = 78.1 bits (193), Expect = 2e-18
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Query: 48 GRFELAFSQIGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATAS 107
E GG ++GA GG G GL N G KLR +LN + G + +
Sbjct: 1 PCPERIVYDTGGGFLMGAVYGGFFGAPHGLVNALRSG-PLKLRLNGVLNATGRRGPSHGN 59
Query: 108 TLGTIAVMYSSFGVLLQTTRGTDDDFNTLTAATATGMLFRSTG 150
+YS L+ RG +D +N++ A TG + G
Sbjct: 60 NFAVFGGLYSGIECALEKLRGKEDPWNSIIAGALTGAVLGLRG 102
>gnl|CDD|227883 COG5596, TIM22, Mitochondrial import inner membrane translocase,
subunit TIM22 [Posttranslational modification, protein
turnover, chaperones].
Length = 191
Score = 36.8 bits (85), Expect = 0.004
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 63 LGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATASTLGTIAVMYSSFGVL 122
LG GG G GL +T + QL N+ K G T LG + ++Y+ +
Sbjct: 81 LGLNFGGVWG---GLFSTIDCTPFRLQLKEQL-NNAGKRGFFTGKNLGVLGLIYAGINSI 136
Query: 123 LQTTRGTDDDFNTLTAATATGMLFRST 149
+ R D N + A TG S+
Sbjct: 137 ITALRAKHDIANAIAAGAFTGAALASS 163
>gnl|CDD|234662 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 473
Score = 31.7 bits (72), Expect = 0.32
Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 24/80 (30%)
Query: 84 GQTGKLRRTQLLNHIMKHGSATASTLGTIAVMYSSFGVLLQTTRGTDDDFNTLTAATATG 143
G GK T +L +M+ G A +G I V L+ R
Sbjct: 128 GTNGKTTTTAMLAAMMQEGGFAAQAVGNIGV--PVSAALVAQPR---------------- 169
Query: 144 MLFRSTGNCLVSSLSSFSLH 163
+ LV+ LSSF LH
Sbjct: 170 ------IDVLVAELSSFQLH 183
>gnl|CDD|130053 TIGR00980, 3a0801so1tim17, mitochondrial import inner membrane
translocase subunit tim17. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 170
Score = 28.7 bits (64), Expect = 2.0
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 57 IGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATASTLGTIAVMY 116
GG+ +G G +KG RN+ G+ + + I ++
Sbjct: 17 FGGAFAMGTIGGSIFQAFKGFRNSPK----GE-KLVGAMRAIKTRAPVLGGNFAVWGGLF 71
Query: 117 SSFGVLLQTTRGTDDDFNTLTAATATG 143
S+ + R +D +N++ + TG
Sbjct: 72 STIDCAVVAIRKKEDPWNSIISGFLTG 98
>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase
subunit tim17; Provisional.
Length = 164
Score = 27.7 bits (62), Expect = 3.8
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 57 IGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATASTLGT-IAV- 114
+GG+ +G G F KG+RN+ + + + A LG A+
Sbjct: 19 MGGAFSMGCIGGFIWHFLKGMRNSP---------KGERFSGGFYLLRKRAPILGGNFAIW 69
Query: 115 --MYSSFGVLLQTTRGTDDDFNTLTAATATG 143
++S+F LQ RG +D +N + + TG
Sbjct: 70 GGLFSTFDCTLQYLRGKEDHWNAIASGFFTG 100
>gnl|CDD|180969 PRK07415, PRK07415, NAD(P)H-quinone oxidoreductase subunit H;
Validated.
Length = 394
Score = 27.8 bits (62), Expect = 5.4
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 18 KSPYLDFDPAYLPKTSQPEFIFPEGASKQR---GRFELAFSQIG 58
KS + FD Y+ K P F P G R G+ EL G
Sbjct: 301 KSEWNGFDYQYVAKKVAPTFKIPNGELYVRLESGKGELGIFIQG 344
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 27.0 bits (60), Expect = 8.7
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 190 IVKERSKRCGLKKCGLGGVVGLGIASLYVLWNKR 223
+V E+ G K C GG+ + L +++
Sbjct: 30 LVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.391
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,382,942
Number of extensions: 1015146
Number of successful extensions: 856
Number of sequences better than 10.0: 1
Number of HSP's gapped: 854
Number of HSP's successfully gapped: 14
Length of query: 236
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 142
Effective length of database: 6,768,326
Effective search space: 961102292
Effective search space used: 961102292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)