BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy711
         (532 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ST8|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
           Cichorium Intybus
 pdb|2ADD|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
           Cichorium Intybus In Complex With Sucrose
 pdb|2ADE|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
           Cichorium Intybus In Complex With Fructose
 pdb|2AEY|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
           Cichorium Intybus In Complex With 2,5
           Dideoxy-2,5-Immino-D-Mannitol
          Length = 543

 Score = 32.0 bits (71), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 224 YASSFVDALLFIHYITVVLIEIRHLQPAFYIKVTRSPDGDSKSYAIGQLSI 274
           YA++F D +++ H ++  L+   HL PA Y     + + DSKS   G  +I
Sbjct: 42  YAATFGDVIIWGHAVSYDLVNWIHLDPAIY----PTQEADSKSCWSGSATI 88


>pdb|2AEZ|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia (E201q)
           From Cichorium Intybus In Complex With 1-Kestose
          Length = 543

 Score = 32.0 bits (71), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 224 YASSFVDALLFIHYITVVLIEIRHLQPAFYIKVTRSPDGDSKSYAIGQLSI 274
           YA++F D +++ H ++  L+   HL PA Y     + + DSKS   G  +I
Sbjct: 42  YAATFGDVIIWGHAVSYDLVNWIHLDPAIY----PTQEADSKSCWSGSATI 88


>pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum
 pdb|3CP8|B Chain B, Crystal Structure Of Gida From Chlorobium Tepidum
 pdb|3CP8|C Chain C, Crystal Structure Of Gida From Chlorobium Tepidum
 pdb|3CP8|D Chain D, Crystal Structure Of Gida From Chlorobium Tepidum
          Length = 641

 Score = 29.3 bits (64), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 119 GVFSSVT--SNLTSQQKAALLACGSECKGML 147
           G FSSVT  S    Q KAA+LACG+   G++
Sbjct: 148 GKFSSVTVRSGRAIQAKAAILACGTFLNGLI 178


>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
           Complex With Adp
          Length = 359

 Score = 28.9 bits (63), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 409 LARALQKYLRVTRQQPRHSVESILSHLAM---CLSHDLSPRAFLEPFLIPAPVLQN 461
           L RALQ+  R+  ++P H++   +S+L +    L   LS   ++ P + P  +++N
Sbjct: 135 LPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVEN 190


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,641,314
Number of Sequences: 62578
Number of extensions: 516889
Number of successful extensions: 967
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 965
Number of HSP's gapped (non-prelim): 7
length of query: 532
length of database: 14,973,337
effective HSP length: 103
effective length of query: 429
effective length of database: 8,527,803
effective search space: 3658427487
effective search space used: 3658427487
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)