Query psy711
Match_columns 532
No_of_seqs 65 out of 67
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 18:25:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06638 Strabismus: Strabismu 100.0 3E-219 6E-224 1696.7 40.9 478 26-532 20-505 (505)
2 KOG3814|consensus 100.0 6E-215 1E-219 1621.7 32.6 490 15-532 30-531 (531)
3 PF10754 DUF2569: Protein of u 77.4 7.5 0.00016 36.2 6.6 80 147-239 57-138 (149)
4 PF03839 Sec62: Translocation 74.8 5.6 0.00012 40.2 5.3 66 98-197 111-180 (224)
5 PRK03612 spermidine synthase; 71.0 14 0.00031 40.8 7.9 27 92-122 151-177 (521)
6 PF10011 DUF2254: Predicted me 67.8 16 0.00035 38.7 7.2 106 90-205 48-155 (371)
7 COG4262 Predicted spermidine s 53.0 33 0.0007 38.0 6.3 89 91-222 148-249 (508)
8 KOG2927|consensus 37.6 40 0.00086 36.7 4.1 88 98-200 190-278 (372)
9 COG0530 ECM27 Ca2+/Na+ antipor 34.6 2.7E+02 0.0059 29.4 9.6 120 93-247 77-203 (320)
10 PF14126 DUF4293: Domain of un 34.2 3.2E+02 0.007 25.8 9.1 77 148-245 55-131 (149)
11 PF07895 DUF1673: Protein of u 32.4 88 0.0019 31.0 5.3 33 171-205 147-179 (205)
12 PF07095 IgaA: Intracellular g 31.5 46 0.001 38.8 3.6 31 150-180 232-262 (705)
13 PF13567 DUF4131: Domain of un 31.4 97 0.0021 26.9 4.9 12 156-167 22-33 (176)
14 PF07527 Hairy_orange: Hairy O 30.6 82 0.0018 23.7 3.7 37 404-440 5-41 (43)
15 smart00511 ORANGE Orange domai 29.9 79 0.0017 23.8 3.5 39 403-441 4-42 (45)
16 PF09125 COX2-transmemb: Cytoc 29.3 74 0.0016 24.5 3.2 22 175-196 14-35 (38)
17 PF11992 DUF3488: Domain of un 28.7 1.9E+02 0.0042 30.1 7.3 68 150-224 28-108 (325)
18 PF13664 DUF4149: Domain of un 26.2 84 0.0018 26.6 3.5 25 94-118 4-28 (101)
19 TIGR00351 narI respiratory nit 25.2 1.9E+02 0.0042 29.0 6.3 81 155-243 98-193 (224)
20 PF11770 GAPT: GRB2-binding ad 25.0 40 0.00088 32.8 1.5 41 136-176 2-46 (158)
21 TIGR00869 sec62 protein transl 24.7 1.1E+02 0.0023 31.6 4.5 22 176-197 164-186 (232)
22 TIGR00905 2A0302 transporter, 23.2 1.8E+02 0.004 31.2 6.1 49 153-202 421-471 (473)
23 PF09685 Tic20: Tic20-like pro 22.9 1.9E+02 0.0041 24.5 5.1 17 189-205 81-97 (109)
24 PLN03130 ABC transporter C fam 22.5 3.4E+02 0.0075 34.7 9.0 55 136-191 29-85 (1622)
25 COG5524 Bacteriorhodopsin [Gen 21.4 3.3E+02 0.0073 29.0 7.3 83 155-249 168-253 (285)
26 KOG3142|consensus 21.3 2.1E+02 0.0045 28.6 5.6 56 183-241 90-146 (187)
27 PRK11598 putative metal depend 21.1 1.3E+02 0.0029 34.0 4.8 51 146-205 49-101 (545)
28 PRK10714 undecaprenyl phosphat 20.0 5.5E+02 0.012 26.6 8.6 22 233-255 288-309 (325)
No 1
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=100.00 E-value=2.7e-219 Score=1696.72 Aligned_cols=478 Identities=59% Similarity=1.015 Sum_probs=463.3
Q ss_pred ccceeeec------CCCCCceeeeeccCCCCCccccceeeeCCCcccccccccccCCCCCCCCCcc-ccccccchhhhhh
Q psy711 26 FQTAVTLD------DNRDGEVIEVQILPQDENWGENTTAVTGNTSEQSGSLEDLALWPGGNQETGL-LFLCHRYIGSVFT 98 (532)
Q Consensus 26 ~~~sv~i~------~~~~~e~ievqil~qDdNWGEtTTaiTGnTSe~S~S~eD~~~~~~~d~~~~~-g~~C~R~l~~~~~ 98 (532)
-+|||+|+ -+++.+++||||+||||||||||||||| |||+|+|+||++++.+ |++++. |++|+||+|++++
T Consensus 20 ~~ks~~i~~p~~~~~~~~~~~~ev~i~~qDdnWGEttTaiTg-TSe~s~S~ed~~~~~~-~~~~~~~~~~c~r~l~~~~~ 97 (505)
T PF06638_consen 20 SEKSVTIQAPMEPLLGNDSERIEVQILPQDDNWGETTTAITG-TSEHSISMEDVSRLSK-DMEDSVVGFDCSRYLGLILA 97 (505)
T ss_pred CCCCCcccCCCCCcCCccccccccccCCCCCCccccceEEec-CCcCCCccchhhhhcc-CccccccCcccceeHHHHHH
Confidence 36677764 1222388899999999999999999999 9999999999999999 877666 9999999999999
Q ss_pred hHhHHHhhhhhhHHHhhcCccCCCcccccchhhhhhhhcccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCCCChHHH
Q psy711 99 GILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFI 178 (532)
Q Consensus 99 ~~L~l~aflSPiaflvLP~i~lw~~~~~~~~~~~~~~l~~Cg~~CeGlliSlAfKLliLlig~WALf~R~~~a~mPRifv 178 (532)
++||++||+|||||++||++ +|+ +++++||++|||+||||||||+||+||+|||||||++|+|||||+
T Consensus 98 ~~L~l~aflSPiaflvLP~i-l~~-----------~~~~~C~~~CeGllislafKLliLlig~WAlf~R~~~a~lPRif~ 165 (505)
T PF06638_consen 98 SILGLLAFLSPIAFLVLPKI-LWR-----------WQLEPCGAECEGLLISLAFKLLILLIGTWALFFRRPRADLPRIFV 165 (505)
T ss_pred HHHHHHHHHhhHHHHHhccc-ccC-----------ccccccCCcccceeHHHHHHHHHHHHHHHHHhcCcccCCCchhHH
Confidence 99999999999999999999 888 558999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhheeeecccccccccccccccceeeehhhhHHHHHHHHHHHHHHHHhhhccCceEEEEEEe
Q psy711 179 FRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLIEIRHLQPAFYIKVTR 258 (532)
Q Consensus 179 fRalll~lvfl~~~syWLFY~VrIl~~~~~~~~~~~~~dY~~IV~yA~SlvDaLLFiHYlAvVLLElR~lqp~f~lkVVR 258 (532)
||+++|+|+|+++|+|||||||||+++ ++.||++||+||+||||||||||||||||||||||||+|+|||||
T Consensus 166 fRa~ll~Lvfl~~~syWLFY~vrIl~~--------~~~dy~~IV~yA~SlvDaLLFiHYlavvLLElR~lqp~f~vkVVR 237 (505)
T PF06638_consen 166 FRALLLVLVFLFLFSYWLFYGVRILDP--------RESDYQGIVSYAVSLVDALLFIHYLAVVLLELRHLQPQFYVKVVR 237 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeec--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEEEEEE
Confidence 999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccChhhHHHHHHHHHHHhhcccCcCCcccccCccccccccCCCCCceEEecCCCCCCCcccCCCccccccc
Q psy711 259 SPDGDSKSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPVSKSKKNHSHSSFKFYDVDGGFNNSTLQSGGECNRSVS 338 (532)
Q Consensus 259 SpDGesR~Y~iG~lSIQrAAv~VLe~YY~dFpvYNP~L~~~~~s~~~k~~~~s~fK~Y~vDg~~n~~~~~~qs~~~Rai~ 338 (532)
|||||||||+||||||||||+||||+||+|||+|||||+++|+++..|++ ++||||||||++|++ ++|+ ||++
T Consensus 238 SpDGesR~Y~iG~lSIQrAAv~vLe~Yy~dFpvyNP~L~~~~~~~~~~~~--s~fK~Ydvdg~~~~~--~~~s---ra~i 310 (505)
T PF06638_consen 238 SPDGESRFYNIGQLSIQRAAVWVLEKYYKDFPVYNPYLERAPKSRAAKHM--SGFKVYDVDGPNNNS--EGQS---RAII 310 (505)
T ss_pred CCCCceeeeecCchhHHHHHHHHHHHHhhcCCccCcchhhcCcccccccC--CCceEEecCCCCCCc--Cccc---HHHH
Confidence 99999999999999999999999999999999999999999999999999 999999999997777 8899 9999
Q ss_pred cccCCCCCCCccccchhhhhhhhhhhhhhhhhhHhHHHHhhhhhhccCCC-CCCCCCCCChHHHHHHhhHHHHHHHHHHH
Q psy711 339 NVHPRRRDSSHNERFYEEHDYERRVKKRRARLITATEEAFTHIKRTGHQE-PVVGGVPMDSYEAAQAVFPSLARALQKYL 417 (532)
Q Consensus 339 ~aaarRRd~shNEryYEE~E~ERRVrKRraRLv~A~EeAFtHikR~~~~e-~~~~~~~Mdp~EAAQaIFpsmAR~LQKYL 417 (532)
+|+|||||+|||||||||+|||||||||||||++|||||||||||+++++ ++.|+++|||+||||||||+|||||||||
T Consensus 311 ~aaarRr~~~hNer~yeE~E~ERRvrKRraRLv~A~EeAFtHikr~~~~~~~~~~~~~Mdp~eAAQaiFpsmaR~LQKYL 390 (505)
T PF06638_consen 311 AAAARRRDSSHNERYYEEAEYERRVRKRRARLVVAVEEAFTHIKRLQEEEQNKRPGEPMDPREAAQAIFPSMARALQKYL 390 (505)
T ss_pred HHhhhhcCCCcchhhhhhHHhhhhhcccceeeeehHHHHHHHHHhhccccccCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 68999999999999999999999999999
Q ss_pred HHhccCCCCChhHHHHHHHHhhhcCCCccccccccCCCCCccccccccccccceEEEeccccccCCCCCcEEEEeeCcEE
Q psy711 418 RVTRQQPRHSVESILSHLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEIQSWSLICDELLTRPLQNGTVFQLLQNEVS 497 (532)
Q Consensus 418 R~TRQQ~~ht~esIl~HLa~CL~~~mspkAFLEryl~~~P~lq~~~e~~~~~~WsLvcde~vt~~L~~G~vF~Lk~~d~s 497 (532)
|+||||||||||||++|||+||+||||||||||||+++||++||++|++++|+|+|||||++++||+||++|||||+|||
T Consensus 391 R~TRQq~~ht~esIl~HLa~Cl~~~~sp~aFLEryl~~~P~l~~~~e~~~~~~WsLvcde~~t~~l~~g~~F~Lk~~d~s 470 (505)
T PF06638_consen 391 RTTRQQPRHTMESILDHLAFCLSHDMSPRAFLERYLSPGPTLQYDKERWQSQQWSLVCDEPVTSGLRDGTVFQLKQNDVS 470 (505)
T ss_pred HHhccCccCCHHHHHHHHHHHHhCCCCHHHHhhhcCCCCCCcCcCcccccCcceEEEEchhhhhcccCCcEEEEEeccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecCeeeeeeeeeCCCCCeeEEeccCccCC
Q psy711 498 LICSVHALPHFNISEEVIHPKSNRFVLRMSSETSV 532 (532)
Q Consensus 498 LvvtV~~iP~f~LsEe~idpks~KFvLrl~SETSV 532 (532)
||||||+||||+|+||++|||||||||||||||||
T Consensus 471 Lvvtv~~iP~~~lsEe~~dpks~kFvLrl~SETSV 505 (505)
T PF06638_consen 471 LVVTVHKIPFFNLSEEFVDPKSNKFVLRLNSETSV 505 (505)
T ss_pred EEEEEecCCceEeeEEeecCCCceEEEecCCCCCC
Confidence 99999999999999999999999999999999998
No 2
>KOG3814|consensus
Probab=100.00 E-value=5.6e-215 Score=1621.66 Aligned_cols=490 Identities=52% Similarity=0.853 Sum_probs=470.4
Q ss_pred ccccCCCCCCCccceeeec-------CCCCCceeeeeccCCCCCccccceeeeCCCcccccccccccCCCCCCCCCc-cc
Q psy711 15 SKSKKDDKMAPFQTAVTLD-------DNRDGEVIEVQILPQDENWGENTTAVTGNTSEQSGSLEDLALWPGGNQETG-LL 86 (532)
Q Consensus 15 ~~~~~~~~~~p~~~sv~i~-------~~~~~e~ievqil~qDdNWGEtTTaiTGnTSe~S~S~eD~~~~~~~d~~~~-~g 86 (532)
-||+.+|+-+--||||+|+ ++.+.++-|++ |+|||||||||++|| |||||+||||+.++.+ |++|+ +|
T Consensus 30 Hks~~~~k~arg~k~~~i~~p~~p~~~~~st~gqev~--~pdenWgenTTvvTG-tse~Sismedi~~i~~-~~~d~~v~ 105 (531)
T KOG3814|consen 30 HKSQLRPKYARGQKSVTIQEPGEPLLGNISTRGQEVA--PPDENWGENTTVVTG-TSEHSISMEDIVRIYK-DMEDSVVG 105 (531)
T ss_pred cccccCCcccccccCcccCCCCcccccCcCCCccccC--CCcccccccceeEec-cccccccHHHHHhhcc-Cccccccc
Confidence 4566668878789999996 66667776754 789999999999999 9999999999999988 76666 99
Q ss_pred cccccchhhhhhhHhHHHhhhhhhHHHhhcCcc---CCCcccccchhhhhhhhcccCCCCCccchhHHHHHHHHHHHHHH
Q psy711 87 FLCHRYIGSVFTGILSVISFLSPLLMLALPKLG---VFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWA 163 (532)
Q Consensus 87 ~~C~R~l~~~~~~~L~l~aflSPiaflvLP~i~---lw~~~~~~~~~~~~~~l~~Cg~~CeGlliSlAfKLliLlig~WA 163 (532)
++|+||+|..++++||+++|+||+||++||.|. +|+ .++++||++|||+|||||||||||+||+||
T Consensus 106 ~~CsR~v~l~~~slL~~~sf~sp~am~~lP~~~P~~~~r-----------~~l~~C~~~CeGllismA~kll~L~ig~wa 174 (531)
T KOG3814|consen 106 LDCSRYVGLLASSLLGLLSFLSPPAMCLLPIIAPRFLWR-----------MELEPCGTDCEGLLISMAFKLLILLIGIWA 174 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHhchhHHHhccccccchhhh-----------ccccccccccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999441 466 779999999999999999999999999999
Q ss_pred HHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhhhhheeeecccccccccccccccceeeehhhhHHHHHHHHHHHHHHHH
Q psy711 164 VFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLI 243 (532)
Q Consensus 164 Lf~R~~~a~mPRifvfRalll~lvfl~~~syWLFY~VrIl~~~~~~~~~~~~~dY~~IV~yA~SlvDaLLFiHYlAvVLL 243 (532)
|||||++|+|||||++||++++|||+|+|+|||||||||++. +++||++||+||+|||||||||||||||||
T Consensus 175 lf~Rk~~A~mPRvf~~RAlll~LV~~~~fayWLFYiVri~~~--------r~~nYk~iV~yatslvDaLLfiHYlaVVLL 246 (531)
T KOG3814|consen 175 LFFRKAMADMPRVFVVRALLLVLVFLIVFAYWLFYIVRILDE--------RYRNYKGIVQYATSLVDALLFIHYLAVVLL 246 (531)
T ss_pred HHhhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--------cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hhhccCceEEEEEEeCCCCCccccccChhhHHHHHHHHHHHhhcccCcCCcccccCccccccccCCCCCceEEecCCCCC
Q psy711 244 EIRHLQPAFYIKVTRSPDGDSKSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPVSKSKKNHSHSSFKFYDVDGGFN 323 (532)
Q Consensus 244 ElR~lqp~f~lkVVRSpDGesR~Y~iG~lSIQrAAv~VLe~YY~dFpvYNP~L~~~~~s~~~k~~~~s~fK~Y~vDg~~n 323 (532)
|||||||+|+|||||||||||||||+||+||||||+||||+||+|||+|||+|++++|+..+|++ +|||+|||||.|.
T Consensus 247 ELR~lqp~f~lkivRspDG~sr~ynlG~lSIQraAv~iL~~Yy~dF~ifNp~L~n~~ks~~aK~s--agfK~Ynvd~~~~ 324 (531)
T KOG3814|consen 247 ELRQLQPQFTLKIVRSPDGESRFYNLGHLSIQRAAVWILEFYYTDFPIFNPHLLNASKSAVAKQS--AGFKVYNVDQFGS 324 (531)
T ss_pred HHHhcCccEEEEEEECCCcchheeeccchHHHHHHHHHHHHHhccCcccChhhhhchHHHHHHhh--cCceEEeccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999997655
Q ss_pred CCcccCCCccccccccccCCCCCCCccccchhhhhhhhhhhhhhhhhhHhHHHHhhhhhhccCCC-CCCCCCCCChHHHH
Q psy711 324 NSTLQSGGECNRSVSNVHPRRRDSSHNERFYEEHDYERRVKKRRARLITATEEAFTHIKRTGHQE-PVVGGVPMDSYEAA 402 (532)
Q Consensus 324 ~~~~~~qs~~~Rai~~aaarRRd~shNEryYEE~E~ERRVrKRraRLv~A~EeAFtHikR~~~~e-~~~~~~~Mdp~EAA 402 (532)
+++.++|| ||+|+|||||||+||||+||||+|||||||||||||++|||||||||||+++++ ++.|+.+|||+|||
T Consensus 325 ~~~s~~qs---RAviaAaARRRd~shnE~~yEE~e~ErRvkKRkaRLi~AaEeAFtHiqr~~ee~~~~~P~~~mDp~eAA 401 (531)
T KOG3814|consen 325 ENNSTGQS---RAVIAAAARRRDSSHNEVYYEEAEHERRVKKRKARLIVAAEEAFTHIQRLQEEEQNQKPGEVMDPREAA 401 (531)
T ss_pred cccchhhH---HHHHHHHHhccccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccccCCCCccChHHHH
Confidence 55558999 999999999999999999999999999999999999999999999999999988 67999999999999
Q ss_pred HHhhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHhhhcCCCccccccccCCCCCccccccccccccceEEEeccccccC
Q psy711 403 QAVFPSLARALQKYLRVTRQQPRHSVESILSHLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEIQSWSLICDELLTRP 482 (532)
Q Consensus 403 QaIFpsmAR~LQKYLR~TRQQ~~ht~esIl~HLa~CL~~~mspkAFLEryl~~~P~lq~~~e~~~~~~WsLvcde~vt~~ 482 (532)
||||||||||||||||+||||||||||||++||++||+|||||||||||||+++|++||+||+|..++|+|||||+|++|
T Consensus 402 qavF~smaRalqKYLrtTrqQ~rHt~esil~Hle~Clt~~lspraFLeryls~~p~~Q~~ker~~~~~WslicdE~Vs~g 481 (531)
T KOG3814|consen 402 QAVFPSMARALQKYLRTTRQQPRHTMESILQHLEFCLTHDLSPRAFLERYLSAGPTPQYEKERWLESQWSLICDEAVSNG 481 (531)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCCHHHHHHHHhccCCCccHHHHHHhhhhheeeechhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeCcEEEEEEeeecCeeeeeeeeeCCCCCeeEEeccCccCC
Q psy711 483 LQNGTVFQLLQNEVSLICSVHALPHFNISEEVIHPKSNRFVLRMSSETSV 532 (532)
Q Consensus 483 L~~G~vF~Lk~~d~sLvvtV~~iP~f~LsEe~idpks~KFvLrl~SETSV 532 (532)
|+||++|+|||+||||||||+|||||||+||++|||||||||||||||||
T Consensus 482 l~~g~~fvLk~~dvsLvvtv~kiPffnLsEe~vdPks~KFvlkl~sEtsV 531 (531)
T KOG3814|consen 482 LQDGIVFVLKSHDVSLVVTVKKIPFFNLSEEFVDPKSHKFVLKLQSETSV 531 (531)
T ss_pred ccCceEEEEEecceEEEEEeccCCceecHHhhcCCCCceEEEEeccccCC
Confidence 99999999999999999999999999999999999999999999999998
No 3
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=77.41 E-value=7.5 Score=36.15 Aligned_cols=80 Identities=13% Similarity=0.415 Sum_probs=53.2
Q ss_pred chhHHHHHHHHHHHHHHHH-hcCCCCCCChHHHHHHHHHHHHH-HHHHHHhhhhheeeecccccccccccccccceeeeh
Q psy711 147 LLSFTFKMILLAVGAWAVF-LRQPRATMPRIFIFRAIVVVFLF-VCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSY 224 (532)
Q Consensus 147 liSlAfKLliLlig~WALf-~R~~~a~mPRifvfRalll~lvf-l~~~syWLFY~VrIl~~~~~~~~~~~~~dY~~IV~y 224 (532)
++++++=.++.+.+.|..+ |-|++...||.++. .+++-+. +.+-+++.-|... + ...|...+-+.
T Consensus 57 ~~~~~~~~~~~~~~l~~~~lffkr~~~~P~~~I~--~ll~~v~~~~l~~~~~~~~~~---~--------~~~d~~~i~~l 123 (149)
T PF10754_consen 57 YFEVAINIAMWLFTLWLLYLFFKRKRRFPKLYII--WLLISVLFIALDAFAFSYIFP---S--------PVIDAEAIREL 123 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHH--HHHHHHHHHHHHHHHHHHhcc---c--------ccccHHHHHHH
Confidence 4677777777777777764 23445689999984 4444444 4444444435443 3 44566678888
Q ss_pred hhhHHHHHHHHHHHH
Q psy711 225 ASSFVDALLFIHYIT 239 (532)
Q Consensus 225 A~SlvDaLLFiHYlA 239 (532)
..++.=|.+++=|+-
T Consensus 124 ~~~li~a~IwipYf~ 138 (149)
T PF10754_consen 124 LRSLIAAAIWIPYFL 138 (149)
T ss_pred HHHHHHHHHHHHHHH
Confidence 889999999999863
No 4
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=74.79 E-value=5.6 Score=40.20 Aligned_cols=66 Identities=17% Similarity=0.357 Sum_probs=38.5
Q ss_pred hhHhHHHhhhhhhHHHhhcCccCCCcccccchhhhhhhhcccCCCCCccchhHHHH-HHHHHHHHHHHHhcCCCCCCChH
Q psy711 98 TGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFK-MILLAVGAWAVFLRQPRATMPRI 176 (532)
Q Consensus 98 ~~~L~l~aflSPiaflvLP~i~lw~~~~~~~~~~~~~~l~~Cg~~CeGlliSlAfK-LliLlig~WALf~R~~~a~mPRi 176 (532)
..+++++..+.-+|+++.| |||.+ + -. -..++|+++= ++.+++| +
T Consensus 111 ~~l~~~~~~~~v~a~~lFP---lWP~~-----------~---r~--gv~YlS~~~lgll~~~~~---------------l 156 (224)
T PF03839_consen 111 QYLIGALLLVGVIAICLFP---LWPRW-----------M---RQ--GVYYLSVGALGLLGLFFA---------------L 156 (224)
T ss_pred HHHHHHHHHHHHHHHHhhh---cChHH-----------H---hh--eeehhHHHHHHHHHHHHH---------------H
Confidence 3444455555555777776 68721 1 10 1257787643 3333333 3
Q ss_pred HHHHHHHHHHHHHHH---HHHhhh
Q psy711 177 FIFRAIVVVFLFVCT---IAYWLF 197 (532)
Q Consensus 177 fvfRalll~lvfl~~---~syWLF 197 (532)
.+.|+++-+++.+++ -.||||
T Consensus 157 aivRlilf~i~w~~~~g~~~fWlf 180 (224)
T PF03839_consen 157 AIVRLILFLITWFFTGGKHGFWLF 180 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEeC
Confidence 467888888888887 448877
No 5
>PRK03612 spermidine synthase; Provisional
Probab=71.05 E-value=14 Score=40.77 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=18.8
Q ss_pred chhhhhhhHhHHHhhhhhhHHHhhcCccCCC
Q psy711 92 YIGSVFTGILSVISFLSPLLMLALPKLGVFS 122 (532)
Q Consensus 92 ~l~~~~~~~L~l~aflSPiaflvLP~i~lw~ 122 (532)
|...++++++|-++ ..|+++|.+|++.
T Consensus 151 y~~ntlGa~~G~l~----~~~vLlp~lG~~~ 177 (521)
T PRK03612 151 LAADYLGALVGGLA----FPFLLLPRLGLIR 177 (521)
T ss_pred HhHHhHHHHHHHHH----HHHHHHHhcchHH
Confidence 45666777777653 3588999997755
No 6
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=67.83 E-value=16 Score=38.72 Aligned_cols=106 Identities=15% Similarity=0.219 Sum_probs=77.8
Q ss_pred ccchhhhhhhHhHHHhhhhhhHHHhhcCccCCCcccccchhhhhhhhcccCCCCCccchhHHHHHHHHHHHHHHHHhcCC
Q psy711 90 HRYIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQP 169 (532)
Q Consensus 90 ~R~l~~~~~~~L~l~aflSPiaflvLP~i~lw~~~~~~~~~~~~~~l~~Cg~~CeGlliSlAfKLliLlig~WALf~R~~ 169 (532)
+-.|+.+.++++++..|.--+.|++|=.- +.|..+++..==..-.+.-..+++=+--.+.++++|..-+.
T Consensus 48 r~lLstia~smitv~~~~fSi~~val~~a----------ssq~sPR~l~~f~~d~~~q~vLg~Figtfvy~l~~l~~i~~ 117 (371)
T PF10011_consen 48 RTLLSTIAGSMITVTGFVFSITLVALQLA----------SSQFSPRLLRNFMRDRVTQVVLGTFIGTFVYSLLVLIAIRS 117 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcccchHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34478999999999999999999988333 11222332222222334445666666666777778877776
Q ss_pred CCC--CChHHHHHHHHHHHHHHHHHHHhhhhheeeecc
Q psy711 170 RAT--MPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEG 205 (532)
Q Consensus 170 ~a~--mPRifvfRalll~lvfl~~~syWLFY~VrIl~~ 205 (532)
... .|++-++=+++++++-+++|.||.-++.+-+..
T Consensus 118 ~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv 155 (371)
T PF10011_consen 118 GDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQV 155 (371)
T ss_pred cccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 655 999999999999999999999999999988877
No 7
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=52.99 E-value=33 Score=38.01 Aligned_cols=89 Identities=18% Similarity=0.269 Sum_probs=57.9
Q ss_pred cchhhhhhhHhHHHhhhhhhHHHhhcCccCCCcccccchhhhhhhhcccCCCCCccchhHHHHHHHHHHHHHHHHhcCCC
Q psy711 91 RYIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQPR 170 (532)
Q Consensus 91 R~l~~~~~~~L~l~aflSPiaflvLP~i~lw~~~~~~~~~~~~~~l~~Cg~~CeGlliSlAfKLliLlig~WALf~R~~~ 170 (532)
.|+|...++++ -.|++||++|+-+. ...+-++=|+++.|-+|.-+
T Consensus 148 DYLGal~~gLl--------~p~lllP~LGl~rt-------------------------a~laG~~Nl~aAvv~~fllr-- 192 (508)
T COG4262 148 DYLGALAGGLL--------WPFLLLPRLGLVRT-------------------------AALAGLCNLAAAVVTLFLLR-- 192 (508)
T ss_pred HhhhhhhHHHH--------HHHHHhhhhccHHH-------------------------HHHHHHHHHHHHHHHHHHHH--
Confidence 56666655432 35789999988552 24556666777777777632
Q ss_pred CCCChHHHHHHHHHHHHHHH-HHHHh------------hhhheeeecccccccccccccccceee
Q psy711 171 ATMPRIFIFRAIVVVFLFVC-TIAYW------------LFFIVQMTEGARATVTGEDVLEYRVVV 222 (532)
Q Consensus 171 a~mPRifvfRalll~lvfl~-~~syW------------LFY~VrIl~~~~~~~~~~~~~dY~~IV 222 (532)
+-+|+=-++|.++-...++. +..+- -||+=-|++. ....||.||
T Consensus 193 ~vl~~~~fl~~~~Al~a~~~alat~~v~s~rit~~~eqqlygdeIIh~--------~qspYQ~iV 249 (508)
T COG4262 193 HVLGLSAFLRGAMALRAAMVALATGLVASDRITHTSEQQLYGDEIIHA--------IQSPYQRIV 249 (508)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHhcccceeehHHHHhhcCceeee--------ccCccceEE
Confidence 36777777785555444444 33332 4778788887 888888876
No 8
>KOG2927|consensus
Probab=37.61 E-value=40 Score=36.65 Aligned_cols=88 Identities=15% Similarity=0.244 Sum_probs=43.1
Q ss_pred hhHhHHHhhhhhhHHHhhcCccCCCcccccchhhhhhhhcccCCCC-CccchhHHHHHHHHHHHHHHHHhcCCCCCCChH
Q psy711 98 TGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSEC-KGMLLSFTFKMILLAVGAWAVFLRQPRATMPRI 176 (532)
Q Consensus 98 ~~~L~l~aflSPiaflvLP~i~lw~~~~~~~~~~~~~~l~~Cg~~C-eGlliSlAfKLliLlig~WALf~R~~~a~mPRi 176 (532)
..+||++.++--+|.++.| |||.. +.+-.--.+-|+.| -+++|++|+==+||++.+|+|+.-+ ++|
T Consensus 190 ~~vl~~~fvl~tlaivLFP---LWP~~-----mR~gvyY~sig~~gfl~~IlvLaIvRlILF~I~~il~~g~-----~g~ 256 (372)
T KOG2927|consen 190 WQVLGVLFVLVTLAIVLFP---LWPRR-----MRQGVYYLSIGAGGFLAFILVLAIVRLILFGITWILTGGK-----HGF 256 (372)
T ss_pred HHHHHHHHHHHHHHHHhcc---cCcHH-----HhcceeeeecchhHHHHHHHHHHHHHHHHHHHHHHHhCCC-----Cce
Confidence 3444444444455555555 68721 11111011224444 3446677777777777777776533 445
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhe
Q psy711 177 FIFRAIVVVFLFVCTIAYWLFFIV 200 (532)
Q Consensus 177 fvfRalll~lvfl~~~syWLFY~V 200 (532)
|+|==|+-=.-| +=|||=+|..
T Consensus 257 W~FPNL~eDvGf--leSF~PLy~~ 278 (372)
T KOG2927|consen 257 WLFPNLTEDVGF--LESFKPLYEY 278 (372)
T ss_pred EeccchhhhhhH--HHhhcccccc
Confidence 555443332222 3456655543
No 9
>COG0530 ECM27 Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]
Probab=34.57 E-value=2.7e+02 Score=29.44 Aligned_cols=120 Identities=14% Similarity=0.191 Sum_probs=80.2
Q ss_pred hhhhhhhHhHHHhhhhhhHHHhhcCccCCCcccccchhhhhhhhcccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCC
Q psy711 93 IGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRAT 172 (532)
Q Consensus 93 l~~~~~~~L~l~aflSPiaflvLP~i~lw~~~~~~~~~~~~~~l~~Cg~~CeGlliSlAfKLliLlig~WALf~R~~~a~ 172 (532)
+|..+++.+..+.++..++.++-|.. +. . . .+.....|.++..++..+.++..+
T Consensus 77 vGnvlGSni~ni~li~gl~ali~~~~--~~-----------~---~------~~~r~~~f~ll~~~~~~~~~~~~~---- 130 (320)
T COG0530 77 VGNVLGSNIFNILLILGLAALIAPLK--VD-----------S---D------VLRREIPFLLLATLILLLVLLDGH---- 130 (320)
T ss_pred eehhhhHHHHHHHHHHHHHHHHhhhH--hh-----------h---h------HHHHhhHHHHHHHHHHHHHHHcCC----
Confidence 35788888888888888888888877 22 0 0 455567788887777777776654
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhhhheeeeccccccccccccc-------ccceeeehhhhHHHHHHHHHHHHHHHHhh
Q psy711 173 MPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVL-------EYRVVVSYASSFVDALLFIHYITVVLIEI 245 (532)
Q Consensus 173 mPRifvfRalll~lvfl~~~syWLFY~VrIl~~~~~~~~~~~~~-------dY~~IV~yA~SlvDaLLFiHYlAvVLLEl 245 (532)
++|+ ..+..+.+.+++.||+++.-|-.+. .++.+. .-.+++.++.+++=.....|++.--..|+
T Consensus 131 ~~~~----~gi~ll~l~~~yl~~~~~~~~~~~~-----~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~g~~llv~~~~~i 201 (320)
T COG0530 131 LSRL----DGIVLLLLYVLYLYYLLKLSREAEE-----PGEQENERPKKGSLRKALLVLVIGLILLVVGSELLVDGAVEI 201 (320)
T ss_pred ccHH----HHHHHHHHHHHHHHHHHHhhhhccc-----cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 5555555566666777766665554 112222 34577888888888888888887666666
Q ss_pred hc
Q psy711 246 RH 247 (532)
Q Consensus 246 R~ 247 (532)
-.
T Consensus 202 A~ 203 (320)
T COG0530 202 AE 203 (320)
T ss_pred HH
Confidence 54
No 10
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=34.21 E-value=3.2e+02 Score=25.82 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhhhhheeeecccccccccccccccceeeehhhh
Q psy711 148 LSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASS 227 (532)
Q Consensus 148 iSlAfKLliLlig~WALf~R~~~a~mPRifvfRalll~lvfl~~~syWLFY~VrIl~~~~~~~~~~~~~dY~~IV~yA~S 227 (532)
...++=.+.-+++.++.|.-|.|.-==|+.++=.++++ .+..+++||.+....- +. +.+
T Consensus 55 ~l~il~~l~~~lal~aIFlyKnR~lQ~~L~~~nill~~-~~~~~~~~~~~~~~~~---------------~~-----~~~ 113 (149)
T PF14126_consen 55 PLFILLVLSAILALIAIFLYKNRKLQIRLCVLNILLNV-GLYGLFAYFSLNLSGE---------------LG-----ATF 113 (149)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccc---------------cc-----chh
Confidence 33444556667788888887776432233332222222 3333444444432211 10 222
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy711 228 FVDALLFIHYITVVLIEI 245 (532)
Q Consensus 228 lvDaLLFiHYlAvVLLEl 245 (532)
--..-.|++-+|+|++.+
T Consensus 114 ~~~~g~~lp~vaii~~~L 131 (149)
T PF14126_consen 114 SFGIGFFLPLVAIIFLWL 131 (149)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 334456777788887765
No 11
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=32.44 E-value=88 Score=31.01 Aligned_cols=33 Identities=12% Similarity=0.340 Sum_probs=19.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhhhhheeeecc
Q psy711 171 ATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEG 205 (532)
Q Consensus 171 a~mPRifvfRalll~lvfl~~~syWLFY~VrIl~~ 205 (532)
..+++.+-..+++.+++-++++ +|++| .+++.+
T Consensus 147 ~~~~~~~~~~~~~sfl~g~~~~-~wl~y-~q~iyw 179 (205)
T PF07895_consen 147 GQIESFISFQSLLSFLSGLLLL-MWLVY-FQIIYW 179 (205)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH-HHHHH-HHHhee
Confidence 3455666666666666666555 77777 343433
No 12
>PF07095 IgaA: Intracellular growth attenuator protein IgaA; InterPro: IPR010771 This family consists of several bacterial intracellular growth attenuator (IgaA) proteins. IgaA is involved in negative control of bacterial proliferation within fibroblasts. IgaA is homologous to the Escherichia coli YrfF and Proteus mirabilis UmoB proteins. Whereas the biological function of YrfF is currently unknown, UmoB has been shown elsewhere to act as a positive regulator of FlhDC, the master regulator of flagella and swarming. FlhDC has been shown to repress cell division during P. mirabilis swarming, suggesting that UmoB could repress cell division via FlhDC. This biological function, if maintained in Salmonella enterica, could sustain a putative negative control of cell division and growth exerted by IgaA in intracellular bacteria [].; GO: 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=31.46 E-value=46 Score=38.83 Aligned_cols=31 Identities=23% Similarity=0.477 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChHHHHH
Q psy711 150 FTFKMILLAVGAWAVFLRQPRATMPRIFIFR 180 (532)
Q Consensus 150 lAfKLliLlig~WALf~R~~~a~mPRifvfR 180 (532)
+++-.+++++|.|.+|.++....+=-|+-+|
T Consensus 232 ~~~a~l~~~~~~w~lfr~p~~~~lqeVhClr 262 (705)
T PF07095_consen 232 LAAAALLLAWGLWLLFRPPSPRKLQEVHCLR 262 (705)
T ss_pred HHHHHHHHHHHHHHHhcCCccccchhhhccc
Confidence 6667788999999999988777766666655
No 13
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=31.43 E-value=97 Score=26.86 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhc
Q psy711 156 LLAVGAWAVFLR 167 (532)
Q Consensus 156 iLlig~WALf~R 167 (532)
++++..+.++++
T Consensus 22 ~~~~~~~~~~~~ 33 (176)
T PF13567_consen 22 LLLLLLLLLFFR 33 (176)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 14
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=30.60 E-value=82 Score=23.65 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=26.6
Q ss_pred HhhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHhhh
Q psy711 404 AVFPSLARALQKYLRVTRQQPRHSVESILSHLAMCLS 440 (532)
Q Consensus 404 aIFpsmAR~LQKYLR~TRQQ~~ht~esIl~HLa~CL~ 440 (532)
+-|-..+.-.-+||...-...-.....+++||+.|++
T Consensus 5 ~Gy~~C~~Ev~~fL~~~~~~~~~~~~rLl~HL~~~~~ 41 (43)
T PF07527_consen 5 AGYSECLNEVSRFLSSVEGVDPGVRARLLSHLQSCLN 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHTS---THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhc
Confidence 5566777778889865555545777889999999986
No 15
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=29.85 E-value=79 Score=23.80 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=30.4
Q ss_pred HHhhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHhhhc
Q psy711 403 QAVFPSLARALQKYLRVTRQQPRHSVESILSHLAMCLSH 441 (532)
Q Consensus 403 QaIFpsmAR~LQKYLR~TRQQ~~ht~esIl~HLa~CL~~ 441 (532)
.+.|...+.-.-+||..+-...-....-+++||+.|+..
T Consensus 4 ~~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~~ 42 (45)
T smart00511 4 RSGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLNQ 42 (45)
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHh
Confidence 368888899999999876553335677899999999864
No 16
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=29.27 E-value=74 Score=24.46 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q psy711 175 RIFIFRAIVVVFLFVCTIAYWL 196 (532)
Q Consensus 175 RifvfRalll~lvfl~~~syWL 196 (532)
|=|++=++.|++||+++++|=|
T Consensus 14 r~Wi~F~l~mi~vFi~li~ytl 35 (38)
T PF09125_consen 14 RGWIAFALAMILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 4466678899999999999843
No 17
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=28.74 E-value=1.9e+02 Score=30.06 Aligned_cols=68 Identities=15% Similarity=0.296 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHh-------------hhhheeeeccccccccccccc
Q psy711 150 FTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYW-------------LFFIVQMTEGARATVTGEDVL 216 (532)
Q Consensus 150 lAfKLliLlig~WALf~R~~~a~mPRifvfRalll~lvfl~~~syW-------------LFY~VrIl~~~~~~~~~~~~~ 216 (532)
+.+-.+++++..|.+..-+++...|.-++-=.++++.++++...|- +.+++|.+|. .+.+
T Consensus 28 ~w~~~~~~~~~~~~~~~~~~~~~~p~r~~~~~l~l~~~~~~~~~~~~~~~~~~~v~lL~~l~~lKlle~-------k~~R 100 (325)
T PF11992_consen 28 LWVIVFFAAALLWRLLLWRRRWRLPPRWLLNLLALLALALLFLQYGSLFGLDAGVALLLLLLALKLLEL-------KTRR 100 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhc-------cccc
Confidence 4445566777778777655555556554422222222222222221 4566677776 2557
Q ss_pred ccceeeeh
Q psy711 217 EYRVVVSY 224 (532)
Q Consensus 217 dY~~IV~y 224 (532)
||.-++-.
T Consensus 101 D~~~l~~l 108 (325)
T PF11992_consen 101 DYYQLLLL 108 (325)
T ss_pred cHHHHHHH
Confidence 88777653
No 18
>PF13664 DUF4149: Domain of unknown function (DUF4149)
Probab=26.15 E-value=84 Score=26.64 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=18.7
Q ss_pred hhhhhhHhHHHhhhhhhHHHhhcCc
Q psy711 94 GSVFTGILSVISFLSPLLMLALPKL 118 (532)
Q Consensus 94 ~~~~~~~L~l~aflSPiaflvLP~i 118 (532)
+..+++.+.+..+++|++|-.||.-
T Consensus 4 ~~w~G~~~~~~fvvap~lF~~L~~~ 28 (101)
T PF13664_consen 4 ALWLGSMVFFTFVVAPVLFKALPRQ 28 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 4455666666678899999998876
No 19
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=25.23 E-value=1.9e+02 Score=29.04 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCCCCCChHHH--HHHHHHHHHHHHHHHHhhhhheeeecccccccccccccccceeeehhhhHH---
Q psy711 155 ILLAVGAWAVFLRQPRATMPRIFI--FRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFV--- 229 (532)
Q Consensus 155 liLlig~WALf~R~~~a~mPRifv--fRalll~lvfl~~~syWLFY~VrIl~~~~~~~~~~~~~dY~~IV~yA~Slv--- 229 (532)
++.++|+-.|..||-.-.-.|..- -=.++++++++++++--+-.+.++... ...||...++++.|++
T Consensus 98 i~~liGl~~Ll~RRl~~~~vr~~s~~~D~~~L~lLl~i~~tGl~~~~~~~~~~--------~~~~~~~~~~w~~sl~~f~ 169 (224)
T TIGR00351 98 VLCLIGGVLLLKRRLFSPRVRATSTGADILILSLLLIQCLLGLLTIPFSAQHM--------DGSEMMKLVGWAQSIVTFR 169 (224)
T ss_pred HHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhccc--------cchhHHHHHHHHHHHHhcC
Confidence 456677777777773321111111 222333333333333322233333322 3457777777777742
Q ss_pred ----------HHHHHHHHHHHHHH
Q psy711 230 ----------DALLFIHYITVVLI 243 (532)
Q Consensus 230 ----------DaLLFiHYlAvVLL 243 (532)
..+..+|.+...+|
T Consensus 170 p~~~~~~~~v~~~~~~H~~l~~~l 193 (224)
T TIGR00351 170 GGASQHLDGVAFIFRLHLVLGMTL 193 (224)
T ss_pred CCchhhHhhhhHHHHHHHHHHHHH
Confidence 36888898776654
No 20
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=24.97 E-value=40 Score=32.76 Aligned_cols=41 Identities=24% Similarity=0.541 Sum_probs=29.0
Q ss_pred hcccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCC----CCChH
Q psy711 136 LLACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRA----TMPRI 176 (532)
Q Consensus 136 l~~Cg~~CeGlliSlAfKLliLlig~WALf~R~~~a----~mPRi 176 (532)
|..||..=-++.|++++=+|+|+.|+-.+..-+.+. +||++
T Consensus 2 L~s~gn~sv~i~igi~Ll~lLl~cgiGcvwhwkhr~~~~ftLPkf 46 (158)
T PF11770_consen 2 LKSCGNTSVAISIGISLLLLLLLCGIGCVWHWKHRDSTRFTLPKF 46 (158)
T ss_pred cccccCchHHHHHHHHHHHHHHHHhcceEEEeeccCccccchHHH
Confidence 347888888888888888888888877665534333 56654
No 21
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=24.72 E-value=1.1e+02 Score=31.56 Aligned_cols=22 Identities=27% Similarity=0.706 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhh
Q psy711 176 IFIFRAIVVVFLFVCT-IAYWLF 197 (532)
Q Consensus 176 ifvfRalll~lvfl~~-~syWLF 197 (532)
+.+.|+++-+++.+++ -.||||
T Consensus 164 laivRlilF~i~~~~~g~~fWlf 186 (232)
T TIGR00869 164 VAILRLILFVLTLIVVKPGIWIF 186 (232)
T ss_pred HHHHHHHHHHHHHHHhCCCeeee
Confidence 3467777666666553 466655
No 22
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=23.17 E-value=1.8e+02 Score=31.20 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=33.1
Q ss_pred HHHHHHHHH--HHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhhhhheee
Q psy711 153 KMILLAVGA--WAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQM 202 (532)
Q Consensus 153 KLliLlig~--WALf~R~~~a~mPRifvfRalll~lvfl~~~syWLFY~VrI 202 (532)
=++++++|. |+++.|+++.+ |-==++|+..-.++.+.+.+-||||.-|+
T Consensus 421 ~~~~~~~g~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (473)
T TIGR00905 421 GFILYAPGIIFYGRARKERGKH-VFNKKEILIATIIVIAAIIAIWLLVNGSI 471 (473)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 344455664 44444444332 43458899999999999999999998764
No 23
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=22.89 E-value=1.9e+02 Score=24.48 Aligned_cols=17 Identities=6% Similarity=0.225 Sum_probs=10.3
Q ss_pred HHHHHHhhhhheeeecc
Q psy711 189 VCTIAYWLFFIVQMTEG 205 (532)
Q Consensus 189 l~~~syWLFY~VrIl~~ 205 (532)
++.+.++.+.+++....
T Consensus 81 l~~~v~~I~~~~~a~~g 97 (109)
T PF09685_consen 81 LLSLVLSIIGAIKANKG 97 (109)
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 45556666666666555
No 24
>PLN03130 ABC transporter C family member; Provisional
Probab=22.47 E-value=3.4e+02 Score=34.69 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=29.9
Q ss_pred hcccCCCCCccchhHHHHHHHHHHHHHHHHhc--CCCCCCChHHHHHHHHHHHHHHHH
Q psy711 136 LLACGSECKGMLLSFTFKMILLAVGAWAVFLR--QPRATMPRIFIFRAIVVVFLFVCT 191 (532)
Q Consensus 136 l~~Cg~~CeGlliSlAfKLliLlig~WALf~R--~~~a~mPRifvfRalll~lvfl~~ 191 (532)
..+|..+.--.-++..|=++++..-+|.+ .+ ++....++.+.+|..+.+++.+++
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWLI-KKDHKVQRFCLRSKWYNYFLALLAAYCT 85 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHh-ccccccCCccccchHHHHHHHHHHHHHH
Confidence 56787444333444444444444555544 34 445667776667766655544433
No 25
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=21.36 E-value=3.3e+02 Score=28.96 Aligned_cols=83 Identities=12% Similarity=0.228 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCCCCCChHH-HHHHHHHHHHHHHHHHHhh-hhheeeeccccc-ccccccccccceeeehhhhHHHH
Q psy711 155 ILLAVGAWAVFLRQPRATMPRIF-IFRAIVVVFLFVCTIAYWL-FFIVQMTEGARA-TVTGEDVLEYRVVVSYASSFVDA 231 (532)
Q Consensus 155 liLlig~WALf~R~~~a~mPRif-vfRalll~lvfl~~~syWL-FY~VrIl~~~~~-~~~~~~~~dY~~IV~yA~SlvDa 231 (532)
++.+.++|..++++.+..=|++- +|-.+.. ++...|+ |++|.++.+.-. ++ ..|=..|. -++.|-
T Consensus 168 lvvl~~l~~~~~~~a~~~~~~v~~~F~~l~~-----~~vvLWl~YPivW~ig~~G~g~i----q~~g~ti~---y~vLDl 235 (285)
T COG5524 168 LVVLAVLVTGFFAKAKTRGTEVRSLFLTLRN-----YTVVLWLGYPIVWLIGPGGNGVI----QPDGETIF---YGVLDL 235 (285)
T ss_pred HHHHHHHHhhhhhhhcccchHHHHHHHHHHH-----HHHHHHHhccceeEEccccCceE----ccccceee---eehHHH
Confidence 55567778888888887777773 4433333 3344588 999999988322 21 22223333 578899
Q ss_pred HHHHHHHHHHHHhhhccC
Q psy711 232 LLFIHYITVVLIEIRHLQ 249 (532)
Q Consensus 232 LLFiHYlAvVLLElR~lq 249 (532)
+.+.-|-.+.+.-+|+.-
T Consensus 236 ~~kv~f~~~ll~~~~~~g 253 (285)
T COG5524 236 FAKVGFPFLLLRGARNFG 253 (285)
T ss_pred HHHHhHHHHHHHHHHhcC
Confidence 999988888887777654
No 26
>KOG3142|consensus
Probab=21.31 E-value=2.1e+02 Score=28.62 Aligned_cols=56 Identities=13% Similarity=0.364 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhh-hheeeecccccccccccccccceeeehhhhHHHHHHHHHHHHHH
Q psy711 183 VVVFLFVCTIAYWLF-FIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLFIHYITVV 241 (532)
Q Consensus 183 ll~lvfl~~~syWLF-Y~VrIl~~~~~~~~~~~~~dY~~IV~yA~SlvDaLLFiHYlAvV 241 (532)
+..++++++++-|+| |..| ....++-|+...|..-++-.....+=.++|.+=...+
T Consensus 90 ~~Livl~~lv~~w~~LY~~r---d~pLvlfgr~i~d~~~l~~L~~~ti~~lflt~~~~~l 146 (187)
T KOG3142|consen 90 LSLIVLLALVAAWLFLYFLR---DEPLVLFGRQISDREVLIGLVLITIPVLFLTSAGSNL 146 (187)
T ss_pred HHHHHHHHHHHHHHheeeec---CCCeEEeeEEecCcchhhhHHHHHHHHHHHhhHHHHH
Confidence 556678888888987 7777 3356778888889888888887777777776654443
No 27
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=21.13 E-value=1.3e+02 Score=33.98 Aligned_cols=51 Identities=10% Similarity=0.288 Sum_probs=30.4
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHH-HHh-hhhheeeecc
Q psy711 146 MLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTI-AYW-LFFIVQMTEG 205 (532)
Q Consensus 146 lliSlAfKLliLlig~WALf~R~~~a~mPRifvfRalll~lvfl~~~-syW-LFY~VrIl~~ 205 (532)
.++|+..=++.+++.++.++..| +++|.++++|+++-.+ +|. ..||| +++.
T Consensus 49 ~~~s~~~~~~~~~~~~~~l~~~~--------~~~k~~~~~l~~~sa~~~Yf~~~ygv-~id~ 101 (545)
T PRK11598 49 VFASMPVVAFSVINIVFTLLSFP--------WLRRPLACLFILVGAAAQYFMMTYGI-VIDR 101 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhcCC-cccH
Confidence 45555555555555556666542 6778777776666544 333 57888 6654
No 28
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=20.04 E-value=5.5e+02 Score=26.58 Aligned_cols=22 Identities=23% Similarity=0.665 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhhccCceEEEE
Q psy711 233 LFIHYITVVLIEIRHLQPAFYIK 255 (532)
Q Consensus 233 LFiHYlAvVLLElR~lqp~f~lk 255 (532)
+.-.|++-++.|.++ +|.|.|+
T Consensus 288 ~igeyi~~i~~~~~~-rp~y~v~ 309 (325)
T PRK10714 288 LLGEYIGRIYNDVRA-RPRYFVQ 309 (325)
T ss_pred HHHHHHHHHHHHhcc-CCcEEEE
Confidence 345799999999776 8999986
Done!