Query psy711
Match_columns 532
No_of_seqs 65 out of 67
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 18:25:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 55.2 11 0.00036 26.5 3.1 23 176-198 5-27 (32)
2 3eml_A Human adenosine A2A rec 44.2 94 0.0032 30.0 9.2 21 101-122 139-159 (488)
3 2db7_A Hairy/enhancer-OF-split 33.1 1E+02 0.0036 24.5 6.2 50 392-441 6-61 (64)
4 2l2t_A Receptor tyrosine-prote 25.3 38 0.0013 25.5 2.2 16 155-170 23-38 (44)
5 2ks1_B Epidermal growth factor 23.6 42 0.0014 25.2 2.2 14 157-170 26-39 (44)
6 3kp9_A Vkorc1/thioredoxin doma 23.1 91 0.0031 30.9 5.1 49 148-201 75-123 (291)
7 1pb6_A Hypothetical transcript 21.3 2.3E+02 0.008 23.8 6.8 52 395-446 156-212 (212)
8 3on2_A Probable transcriptiona 19.8 3.1E+02 0.01 22.6 7.1 48 397-447 152-199 (199)
9 3vmt_A Monofunctional glycosyl 18.1 86 0.0029 31.3 3.7 68 167-235 26-93 (263)
10 1vi0_A Transcriptional regulat 16.9 4.9E+02 0.017 22.3 8.7 49 394-445 147-195 (206)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=55.23 E-value=11 Score=26.47 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q psy711 176 IFIFRAIVVVFLFVCTIAYWLFF 198 (532)
Q Consensus 176 ifvfRalll~lvfl~~~syWLFY 198 (532)
||---+.+..|+.+..|.||||-
T Consensus 5 iweviaglvalltflafgfwlfk 27 (32)
T 2lx0_A 5 IWEVIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555777788888899999994
No 2
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=44.23 E-value=94 Score=30.04 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=10.1
Q ss_pred hHHHhhhhhhHHHhhcCccCCC
Q psy711 101 LSVISFLSPLLMLALPKLGVFS 122 (532)
Q Consensus 101 L~l~aflSPiaflvLP~i~lw~ 122 (532)
+.+++.+..+++.+.|.+ .|.
T Consensus 139 ~i~~~W~~s~~~~~~~~~-~~~ 159 (488)
T 3eml_A 139 IIAICWVLSFAIGLTPML-GWN 159 (488)
T ss_dssp HHHHHHHHHHHHHTTGGG-TCC
T ss_pred HHHHHHHHHHHHHHHHHh-ccc
Confidence 333444455555555555 443
No 3
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=33.09 E-value=1e+02 Score=24.51 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=38.2
Q ss_pred CCCCCChHHHHH----HhhHHHHHHHHHHHHHhccCCCC--ChhHHHHHHHHhhhc
Q psy711 392 GGVPMDSYEAAQ----AVFPSLARALQKYLRVTRQQPRH--SVESILSHLAMCLSH 441 (532)
Q Consensus 392 ~~~~Mdp~EAAQ----aIFpsmAR~LQKYLR~TRQQ~~h--t~esIl~HLa~CL~~ 441 (532)
....+||...|+ +-|-..+.-.-+||...--..-. ....+++||+.|+..
T Consensus 6 ~~~~~d~~~~~~~yrs~Gf~eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~~~~ 61 (64)
T 2db7_A 6 SGGYFDAHALAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQ 61 (64)
T ss_dssp CTTCCCHHHHHHTHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCcccCchHHHHHHHHHhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhc
Confidence 345788888773 57888999999999986543333 467899999999864
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=25.25 E-value=38 Score=25.52 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhcCCC
Q psy711 155 ILLAVGAWAVFLRQPR 170 (532)
Q Consensus 155 liLlig~WALf~R~~~ 170 (532)
+.++++.|++|+|+++
T Consensus 23 v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 23 LVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhhh
Confidence 3355577888887764
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=23.64 E-value=42 Score=25.19 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCCC
Q psy711 157 LAVGAWAVFLRQPR 170 (532)
Q Consensus 157 Llig~WALf~R~~~ 170 (532)
++++.|++|+|+++
T Consensus 26 ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 26 VVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhhH
Confidence 44577778887764
No 6
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=23.07 E-value=91 Score=30.93 Aligned_cols=49 Identities=8% Similarity=0.060 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhhhhhee
Q psy711 148 LSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQ 201 (532)
Q Consensus 148 iSlAfKLliLlig~WALf~R~~~a~mPRifvfRalll~lvfl~~~syWLFY~Vr 201 (532)
+++++=.+++++|.+.+. .+.+||-+. .++....++.++|+.||.|.--
T Consensus 75 ~G~~~y~~v~~l~~~~~~----~~~~~~~~~-~~l~~~~~~~~~fs~yL~y~~~ 123 (291)
T 3kp9_A 75 VGLLGFLGVLALAVLPDG----LPLVKRWRW-PALFGLVSAMTAFEMYMLYLMV 123 (291)
T ss_dssp HHHHHHHHHHHHHHCC------CTTCSTTHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh----ccchhhHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666664332 356777433 2444445666778888887643
No 7
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=21.28 E-value=2.3e+02 Score=23.80 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=35.7
Q ss_pred CCChHHHHHHhhHHHHHHHHHHHHHhc-----cCCCCChhHHHHHHHHhhhcCCCcc
Q psy711 395 PMDSYEAAQAVFPSLARALQKYLRVTR-----QQPRHSVESILSHLAMCLSHDLSPR 446 (532)
Q Consensus 395 ~Mdp~EAAQaIFpsmAR~LQKYLR~TR-----QQ~~ht~esIl~HLa~CL~~~mspk 446 (532)
+.||..+|..++..+...+.......+ .......+.+++++...+-.|+.|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~ 212 (212)
T 1pb6_A 156 PIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR 212 (212)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTHHHHHHHHSCCTTSHHHHHHHHHHHHHHHHTTTSCC
T ss_pred ccCHHHHHHHHHHHhhhHHHhHHhHHHHhCcCcchHHHHHHHHHHHHHHHHhcccCC
Confidence 689999999999988665433322211 1224456788888888888888774
No 8
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=19.76 E-value=3.1e+02 Score=22.61 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=34.4
Q ss_pred ChHHHHHHhhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHhhhcCCCccc
Q psy711 397 DSYEAAQAVFPSLARALQKYLRVTRQQPRHSVESILSHLAMCLSHDLSPRA 447 (532)
Q Consensus 397 dp~EAAQaIFpsmAR~LQKYLR~TRQQ~~ht~esIl~HLa~CL~~~mspkA 447 (532)
|+..+|..++..+.....-+ ....-.....+.+++++..-+-.++ |+|
T Consensus 152 ~~~~~a~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~gl-p~a 199 (199)
T 3on2_A 152 DASRIALVAFATFHGIATLA--AGGMLDGAPVDEVVTAASDTFWRGL-AQA 199 (199)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--HTTCSTTCCHHHHHHHHHHHHHHHH-BC-
T ss_pred cHHHHHHHHHHHHHHHHHHH--HhcccCCcCHHHHHHHHHHHHHhcC-CCC
Confidence 99999999988776655433 2333355688889998888888887 765
No 9
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=18.06 E-value=86 Score=31.26 Aligned_cols=68 Identities=6% Similarity=0.200 Sum_probs=34.4
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHhhhhheeeecccccccccccccccceeeehhhhHHHHHHHH
Q psy711 167 RQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLFI 235 (532)
Q Consensus 167 R~~~a~mPRifvfRalll~lvfl~~~syWLFY~VrIl~~~~~~~~~~~~~dY~~IV~yA~SlvDaLLFi 235 (532)
.+++-..++=.+.+.++++|+++++++..+||.+.-.+. ..+-..+...+|-.+=+-.-.+.||++.+
T Consensus 26 ~~~kk~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~~~~~r~~v~l~~Ip~~l~~AvIA~ 93 (263)
T 3vmt_A 26 KPPKKKKSKRILLKILLTILIIIALFIGIMYFLSTRDNV-DELRKIENKSSFVSADNMPEYVKGAFISM 93 (263)
T ss_dssp ---------CCTTHHHHHHHHHHHHHHHHHHHHHSCSCG-GGGGGGGGSTTCCCGGGSCHHHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCch-hhhhhhhccCCCCCHHHcCHHHHHHHHHH
Confidence 345555666455566666666666666666655544433 22223334456666666677888887764
No 10
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=16.86 E-value=4.9e+02 Score=22.25 Aligned_cols=49 Identities=10% Similarity=0.194 Sum_probs=34.9
Q ss_pred CCCChHHHHHHhhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHhhhcCCCc
Q psy711 394 VPMDSYEAAQAVFPSLARALQKYLRVTRQQPRHSVESILSHLAMCLSHDLSP 445 (532)
Q Consensus 394 ~~Mdp~EAAQaIFpsmAR~LQKYLR~TRQQ~~ht~esIl~HLa~CL~~~msp 445 (532)
...||..+|..++-.+-..+..++. .....+.+.+.+.+...+..++.+
T Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~gl~~ 195 (206)
T 1vi0_A 147 EGLDVRLARQMIFGTIDETVTTWVM---NDQKYDLVALSNSVLELLVSGIHN 195 (206)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHH---TTTCSCGGGGHHHHHHHHHHCSBC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH---CCCcccHHHHHHHHHHHHHHHhcc
Confidence 3479999999999887766666654 234467788888777777666554
Done!