Query psy711
Match_columns 532
No_of_seqs 65 out of 67
Neff 3.5
Searched_HMMs 13730
Date Fri Aug 16 18:25:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy711.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/711hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vi0a2 a.121.1.1 (A:78-194) H 68.1 14 0.001 27.9 8.8 50 394-446 68-117 (117)
2 d2db7a1 a.273.1.1 (A:3-57) Hai 45.4 19 0.0014 26.6 5.4 46 396-441 3-54 (55)
3 d1qhxa_ c.37.1.3 (A:) Chloramp 33.7 11 0.00078 29.5 2.6 51 357-407 124-174 (178)
4 d1z96a1 a.5.2.1 (A:295-332) UB 23.3 16 0.0012 24.7 1.5 12 395-406 13-24 (38)
5 d1pj5a1 b.44.2.1 (A:743-830) N 20.4 55 0.004 24.7 4.5 35 480-521 51-85 (88)
6 d1v5va1 b.44.2.1 (A:313-401) G 18.6 60 0.0044 24.5 4.3 32 483-521 53-84 (89)
7 d1jt6a2 a.121.1.1 (A:73-187) M 16.0 1.3E+02 0.0095 23.7 6.0 65 374-444 51-115 (115)
8 d1rq6a_ a.4.15.1 (A:) ribosoma 12.9 32 0.0023 25.7 1.2 18 273-290 8-25 (62)
9 d1l3la2 d.110.5.1 (A:2-169) Tr 11.7 11 0.00083 31.3 -2.0 64 445-508 53-136 (168)
10 d2iuba2 f.17.3.1 (A:286-349) M 10.7 87 0.0063 22.3 3.0 24 144-168 40-63 (64)
No 1
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=68.08 E-value=14 Score=27.87 Aligned_cols=50 Identities=10% Similarity=0.208 Sum_probs=39.6
Q ss_pred CCCChHHHHHHhhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHhhhcCCCcc
Q psy711 394 VPMDSYEAAQAVFPSLARALQKYLRVTRQQPRHSVESILSHLAMCLSHDLSPR 446 (532)
Q Consensus 394 ~~Mdp~EAAQaIFpsmAR~LQKYLR~TRQQ~~ht~esIl~HLa~CL~~~mspk 446 (532)
..+||.-+|+++|-.+-.....++. .....+.|.+.+++-.=+-+|+++|
T Consensus 68 ~d~d~~~~a~~i~g~i~~~~~~w~~---~~~~~~~~~~~~~~~~~~~~Gl~~r 117 (117)
T d1vi0a2 68 EGLDVRLARQMIFGTIDETVTTWVM---NDQKYDLVALSNSVLELLVSGIHNK 117 (117)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHH---TTTCSCGGGGHHHHHHHHHHCSBCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 4699999999999998775444433 3566789999999998888888875
No 2
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.43 E-value=19 Score=26.61 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=33.6
Q ss_pred CChHHHH---HH-hhHHHHHHHHHHHHHhccCCCC--ChhHHHHHHHHhhhc
Q psy711 396 MDSYEAA---QA-VFPSLARALQKYLRVTRQQPRH--SVESILSHLAMCLSH 441 (532)
Q Consensus 396 Mdp~EAA---Qa-IFpsmAR~LQKYLR~TRQQ~~h--t~esIl~HLa~CL~~ 441 (532)
.||..-| .| -|--.|.-..+||-+---..-. -..-.++||+.|++.
T Consensus 3 ~D~~~la~~yra~GF~ECa~EV~RyL~~~eg~d~~d~~r~RLl~HL~~C~~q 54 (55)
T d2db7a1 3 FDAHALAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQ 54 (55)
T ss_dssp CCHHHHHHTHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhccHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHhc
Confidence 3666666 45 7888999999999876543222 356699999999975
No 3
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}
Probab=33.73 E-value=11 Score=29.48 Aligned_cols=51 Identities=18% Similarity=0.072 Sum_probs=27.6
Q ss_pred hhhhhhhhhhhhhhhHhHHHHhhhhhhccCCCCCCCCCCCChHHHHHHhhH
Q psy711 357 HDYERRVKKRRARLITATEEAFTHIKRTGHQEPVVGGVPMDSYEAAQAVFP 407 (532)
Q Consensus 357 ~E~ERRVrKRraRLv~A~EeAFtHikR~~~~e~~~~~~~Mdp~EAAQaIFp 407 (532)
.+.+||.+.|.-|..-..+.=+..+.+....+-......++|.|+|+.|..
T Consensus 124 e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~dl~IDts~~s~ee~a~~I~~ 174 (178)
T d1qhxa_ 124 AVAEGRETARGDRVAGMAAKQAYVVHEGVEYDVEVDTTHKESIECAWAIAA 174 (178)
T ss_dssp HHHHHHHHHTSSSCTTHHHHHTTGGGTTCCCSEEEETTSSCHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcchhhhhhhhhhhhcCCCCCEEEECCCCCHHHHHHHHHH
Confidence 345566666655544433333333333222221233467899999999864
No 4
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=23.29 E-value=16 Score=24.71 Aligned_cols=12 Identities=50% Similarity=0.443 Sum_probs=9.9
Q ss_pred CCChHHHHHHhh
Q psy711 395 PMDSYEAAQAVF 406 (532)
Q Consensus 395 ~Mdp~EAAQaIF 406 (532)
-.||.|||||.=
T Consensus 13 gfdpleaaqald 24 (38)
T d1z96a1 13 GFDPLEAAQALD 24 (38)
T ss_dssp TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHh
Confidence 469999999864
No 5
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}
Probab=20.41 E-value=55 Score=24.69 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=29.0
Q ss_pred ccCCCCCcEEEEeeCcEEEEEEeeecCeeeeeeeeeCCCCCe
Q psy711 480 TRPLQNGTVFQLLQNEVSLICSVHALPHFNISEEVIHPKSNR 521 (532)
Q Consensus 480 t~~L~~G~vF~Lk~~d~sLvvtV~~iP~f~LsEe~idpks~K 521 (532)
......|..|++.-.+=..-|+|.+.||| ||++.|
T Consensus 51 ~~~~~~g~~~~V~~~g~~~~a~v~~~P~y-------DP~~~r 85 (88)
T d1pj5a1 51 PGTVSVGDSVDIEYFGRRITATVTEDPLY-------DPKMTR 85 (88)
T ss_dssp ETTCCTTCEEEEEETTEEEEEEEECSCSS-------CTTCTT
T ss_pred ecCcCCCCEEEEEECCEEEEEEEEccCCC-------CCCCcc
Confidence 34556799999988888889999999998 888754
No 6
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=18.56 E-value=60 Score=24.51 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=26.0
Q ss_pred CCCCcEEEEeeCcEEEEEEeeecCeeeeeeeeeCCCCCe
Q psy711 483 LQNGTVFQLLQNEVSLICSVHALPHFNISEEVIHPKSNR 521 (532)
Q Consensus 483 L~~G~vF~Lk~~d~sLvvtV~~iP~f~LsEe~idpks~K 521 (532)
...|..+.+.-.+=..-|+|...||| ||+.||
T Consensus 53 ~~~g~~v~v~i~g~~~~a~v~~~Pfy-------Dp~~~~ 84 (89)
T d1v5va1 53 AKPGIEIEVEIRGQRKKAVTVTPPFY-------DPKKYG 84 (89)
T ss_dssp CSTTCEEEEEETTEEEEEEEECSCSS-------CTTTSS
T ss_pred cCCCCEEEEEECCeEEEEEEECCCCc-------CCcccE
Confidence 46788888877666778999999987 999886
No 7
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=16.02 E-value=1.3e+02 Score=23.71 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=45.9
Q ss_pred HHHHhhhhhhccCCCCCCCCCCCChHHHHHHhhHHHHHHHHHHHHHhccCCCCChhHHHHHHHHhhhcCCC
Q psy711 374 TEEAFTHIKRTGHQEPVVGGVPMDSYEAAQAVFPSLARALQKYLRVTRQQPRHSVESILSHLAMCLSHDLS 444 (532)
Q Consensus 374 ~EeAFtHikR~~~~e~~~~~~~Mdp~EAAQaIFpsmAR~LQKYLR~TRQQ~~ht~esIl~HLa~CL~~~ms 444 (532)
-|+.|.-|=+-.. +.+.-...||..+|.+|+-.+----+ -.|.+...+.++|.++...=+-+|+|
T Consensus 51 y~~~~~~Ii~eGi--~~G~f~~~d~~~~~~~il~~lng~~~----Wy~~~g~~~~~~la~~~~~l~L~Gia 115 (115)
T d1jt6a2 51 YIDAYHVIFKEGN--LNGEWSINDVNAVSKIAANAVNGIVT----FTHEQNINERIKLMNKFSQIFLNGLS 115 (115)
T ss_dssp HHHHHHHHHHHHH--TTTSCCCSCHHHHHHHHHHHHHHHHH----SCTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH--HCCceeccCHHHHHHHHHHHHHHHHH----HhccCCCCCHHHHHHHHHHHHHhhcC
Confidence 4455554433111 23444566999999999998875444 45888888999999999888888775
No 8
>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.87 E-value=32 Score=25.71 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHhhcccC
Q psy711 273 SIQRAAVWVLQKYYTEFS 290 (532)
Q Consensus 273 SIQrAAv~VLe~YY~dFp 290 (532)
-|-|+|-.++|+||..|+
T Consensus 8 ~iKr~a~~lieky~~~ft 25 (62)
T d1rq6a_ 8 FVKRIAKEMIETHPGKFT 25 (62)
T ss_dssp HHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHchhHhc
Confidence 478999999999998776
No 9
>d1l3la2 d.110.5.1 (A:2-169) Transcription factor TraR, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=11.71 E-value=11 Score=31.27 Aligned_cols=64 Identities=17% Similarity=0.297 Sum_probs=42.5
Q ss_pred ccccccccCCCC-----CccccccccccccceEEEe-------------ccccccCCCCCcEEEEeeC--cEEEEEEeee
Q psy711 445 PRAFLEPFLIPA-----PVLQNEKEQKEIQSWSLIC-------------DELLTRPLQNGTVFQLLQN--EVSLICSVHA 504 (532)
Q Consensus 445 pkAFLEryl~~~-----P~lq~~~e~~~~~~WsLvc-------------de~vt~~L~~G~vF~Lk~~--d~sLvvtV~~ 504 (532)
|.+++++|...+ |++.+...+.....|+-+- |+...-||++|++|-+... .+.++.-...
T Consensus 53 P~~W~~~Y~~~~~~~~DPv~~~~~~~~~P~~W~~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tvpv~~~~g~~g~ls~a~~ 132 (168)
T d1l3la2 53 HRQWQSTYFDKKFEALDPVVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMASD 132 (168)
T ss_dssp CHHHHHHHHHTTGGGTCHHHHHHHHCCSCEEEEHHHHTTTCCHHHHHHHHHHHTTTCSEEEEEEEECGGGCEEEEEEEES
T ss_pred CHHHHHHHHHCCCeeeCcHHHHHHcCCCCcchhhhhhccccCHHHHHHHHHHHHCCCCceEEEEEECCCCCEEEEEEecC
Confidence 677777776655 7777776677778887542 3455679999999999764 4554433333
Q ss_pred cCee
Q psy711 505 LPHF 508 (532)
Q Consensus 505 iP~f 508 (532)
-|..
T Consensus 133 ~~~~ 136 (168)
T d1l3la2 133 KPVI 136 (168)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 4443
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=10.67 E-value=87 Score=22.26 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=12.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHhcC
Q psy711 144 KGMLLSFTFKMILLAVGAWAVFLRQ 168 (532)
Q Consensus 144 eGlliSlAfKLliLlig~WALf~R~ 168 (532)
.|.++.+++= +++.++.+++|.||
T Consensus 40 ~~~~~~~~~~-~~~~~~~~~~f~rk 63 (64)
T d2iuba2 40 WGYPVVLAVM-GVIAVIMVVYFKKK 63 (64)
T ss_dssp --CHHHHHHH-HHHHHHHHTTTTSC
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcc
Confidence 4666666653 34455555555544
Done!