RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy711
(532 letters)
>gnl|CDD|219117 pfam06638, Strabismus, Strabismus protein. This family consists of
several strabismus (STB) or Van Gogh-like (VANGL)
proteins 1 and 2. The exact function of this family is
unknown. It is thought, however that STB1 gene and STB2
may be potent tumour suppressor gene candidates.
Length = 507
Score = 671 bits (1733), Expect = 0.0
Identities = 265/524 (50%), Positives = 357/524 (68%), Gaps = 35/524 (6%)
Query: 11 ESRSSKS-KKDDKMAPFQTAVTLDDNRDGEVIEVQILPQDENWGENTTAVTGNTSEQSGS 69
SRS KS P + + IEVQI PQD+NWGE TTAVTG TSE S S
Sbjct: 17 SSRSDKSVTIQAPGEPLLDSDSAI-----SSIEVQIEPQDDNWGETTTAVTG-TSEHSIS 70
Query: 70 LEDLALWPGGNQETGLLFLCHRYIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLT 129
+EDLA ++ + C RY+G G+L +++F++PL + LP++G +
Sbjct: 71 MEDLARIGKDMEDRVVGLNCRRYLGLALGGLLGLLAFVTPLAFIVLPQVG-WRD------ 123
Query: 130 SQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFV 189
L CG+ C+G+L+S FK+++L + +WA+FLR PRA MPRIF+FRA+++V +F+
Sbjct: 124 -----RLEPCGTACEGLLISLAFKLLILLIASWALFLRPPRADMPRIFVFRALLLVLVFL 178
Query: 190 CTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLIEIRHLQ 249
+YWLF+ V+ + G Y+ +V YA S VDALLFIHY+ VVL+E+RHLQ
Sbjct: 179 FLFSYWLFYGVR--------ILGAREKNYKGIVQYAVSLVDALLFIHYLAVVLLELRHLQ 230
Query: 250 PAFYIKVTRSPDGDSKSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPVSKSKKNHS 309
P FY+KV RS DG+S+ Y IGQLSIQRAAVWVL+ YY +F +YNPYL P S++ K+ +
Sbjct: 231 PQFYVKVVRSTDGESRFYNIGQLSIQRAAVWVLENYYKDFPVYNPYLLNAPKSRAAKHMA 290
Query: 310 HSSFKFYDVDGGFNNSTLQSGGECNRSVSNVHPRRRDSSHNERFYEEHDYERRVKKRRAR 369
FK Y+VDG +NST QS R++ RRRDSSHNER+YEE +YERRV+KR+AR
Sbjct: 291 G--FKVYNVDGPTSNSTSQS-----RALIAAAARRRDSSHNERYYEEAEYERRVRKRKAR 343
Query: 370 LITATEEAFTHIKRT-GHQEPVVGGVPMDSYEAAQAVFPSLARALQKYLRVTRQQPRHSV 428
L+ A EEAFTHIKR E PMD EAAQA+FPS+ARALQKYLR TRQQ RH++
Sbjct: 344 LVVAVEEAFTHIKRLQEEDENKKPANPMDPREAAQAIFPSMARALQKYLRTTRQQHRHTM 403
Query: 429 ESILSHLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEIQSWSLICDELLTRPLQNGTV 488
ESIL HLA CL+HD+SP+AFLE +L P P LQ +KE++ ++ W+L+ +E +T L++GTV
Sbjct: 404 ESILQHLAFCLTHDMSPKAFLERYLSPGPTLQYDKERRGVRQWTLVSEESVTSGLRDGTV 463
Query: 489 FQLLQNEVSLICSVHALPHFNISEEVIHPKSNRFVLRMSSETSV 532
FQL Q + SL+ +V ++P FN+SEE + PKS++FVL++ SETSV
Sbjct: 464 FQLKQLDFSLVVTVKSIPFFNLSEEFVDPKSHKFVLKLQSETSV 507
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 35.4 bits (82), Expect = 0.075
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 14/155 (9%)
Query: 93 IGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTF 152
+ IL ++ L PL+++ L L + NL G G+ L
Sbjct: 139 ESAKIQNILGIVKLLLPLILIILLGLVLALGGGFNLLPNSWTTFFPSGW--PGVFLGLL- 195
Query: 153 KMILLAVGAW---AVFLR-QPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARA 208
++L + G + A + +P+ A+ + L + Y L I+ +
Sbjct: 196 -IVLWSFGGFESAANVSEEVKKRDVPK-----ALFIGLLI-VGVLYLLVNILFLGVVPDD 248
Query: 209 TVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLI 243
+ L + + + I I + L
Sbjct: 249 EIAKLSNLPSVAALLFEAVGGPWGAIIVVILLALS 283
>gnl|CDD|220672 pfam10277, Frag1, Frag1/DRAM/Sfk1 family. This family includes
Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor
activating protein 1) is a protein that is conserved
from fungi to humans. There are four potential
iso-prenylation sites throughout the peptide, viz CILW,
CIIW and CIGL. Frag1 is a membrane-spanning protein that
is ubiquitously expressed in adult tissues suggesting an
important cellular function. Dram is a family of
proteins conserved from nematodes to humans with six
hydrophobic transmembrane regions and an Endoplasmic
Reticulum signal peptide. It is a lysosomal protein that
induces macro-autophagy as an effector of p53-mediated
death, where p53 is the tumour-suppressor gene that is
frequently mutated in cancer. Expression of Dram is
stress-induced. This region is also part of a family of
small plasma membrane proteins, referred to as Sfk1,
that may act together with or upstream of Stt4p to
generate normal levels of the essential phospholipid
PI4P, thus allowing proper localisation of Stt4p to the
actin cytoskeleton.
Length = 216
Score = 32.6 bits (75), Expect = 0.37
Identities = 11/58 (18%), Positives = 25/58 (43%)
Query: 145 GMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQM 202
G +L F ++ + + + P + + F + I+ + F+ I + +FFI
Sbjct: 123 GAILFFVGGLLYMLLQTALSYRLGPTPVLRKSFRLKLILSIIAFISAIPFGVFFIQHN 180
>gnl|CDD|217925 pfam04145, Ctr, Ctr copper transporter family. The redox active
metal copper is an essential cofactor in critical
biological processes such as respiration, iron
transport, oxidative stress protection, hormone
production, and pigmentation. A widely conserved family
of high-affinity copper transport proteins (Ctr
proteins) mediates copper uptake at the plasma membrane.
A series of clustered methionine residues in the
hydrophilic extracellular domain, and an MXXXM motif in
the second transmembrane domain, are important for
copper uptake. These methionine probably coordinate
copper during the process of metal transport.
Length = 102
Score = 29.8 bits (68), Expect = 1.0
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 145 GMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVC--TIAYWLFFIVQM 202
S +L L++ R + R+ +F+ ++ L ++Y L IV M
Sbjct: 26 MYAGSCIAIFLL---AILYEGLKRVRRKLERMSLFQHLIRALLHFLQVGLSYLLMLIV-M 81
Query: 203 T 203
T
Sbjct: 82 T 82
>gnl|CDD|235139 PRK03612, PRK03612, spermidine synthase; Provisional.
Length = 521
Score = 31.0 bits (71), Expect = 1.7
Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 46/139 (33%)
Query: 92 YIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFT 151
Y+G++ G+ F P L+L P+LG + A L
Sbjct: 155 YLGALVGGLA----F--PFLLL--PRLG-----------LIRTAAL-------------- 181
Query: 152 FKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVT 211
+ L ++L + ++ + A +V+ L R T
Sbjct: 182 TGSLNLLAALVFLWLFRHELRRRKLLLAAAALVLGLLAAGFVL----------ADRIETT 231
Query: 212 GEDVLEY--RVVVSYASSF 228
E +L Y VV + + +
Sbjct: 232 AEQLL-YGDPVVYAEQTPY 249
>gnl|CDD|221791 pfam12822, DUF3816, Protein of unknown function (DUF3816). This
family of proteins is functionally uncharacterized but
are likely to be membrane transporters. This family of
proteins is found in bacteria and archaea. Proteins in
this family are typically between 177 and 208 amino
acids in length. A subset of this family is associated
with the TM1506 proteins. In this context, transport
through the channel is predicted to be regulated by the
TM1506 protein by either regulating redox potential or
modification of substrates.
Length = 168
Score = 29.5 bits (67), Expect = 2.5
Identities = 22/169 (13%), Positives = 48/169 (28%), Gaps = 25/169 (14%)
Query: 96 VFTGILSVISFLSPLLMLAL------------------PKLGVFSSVTSNLTSQQKAALL 137
V +LS +S + + P G + ++L S L
Sbjct: 4 VLIALLSALSIVLMYIPFPPLKIDFSHIPVLLGAFLLGPVAGALIGLLTSLLS---FLLF 60
Query: 138 ACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRATMPRIF--IFRAIVVVFLFVCTIAYW 195
G L+ IL + A ++ + + T R I ++ L +
Sbjct: 61 GGGPFALVGPLANFLPRILFGLIAGLIYKKLRKKTKKRAVLAIILGTILGTLVATLLNLG 120
Query: 196 LFFIVQMTE-GARATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLI 243
L + G + + ++ + + ++ I +L
Sbjct: 121 LILPLYAKFLGMPISAIVGALFAAVLLPVLPFNLIKGIIAS-IIVYLLY 168
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional.
Length = 445
Score = 30.2 bits (68), Expect = 3.0
Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 22/116 (18%)
Query: 85 LLFLCHRYIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECK 144
LL L G+ F ++++ + +++ L G+F N + A+ A GS
Sbjct: 140 LLHLRSVEGGAAFQTLITIAKIIPFTIVIGL---GIFWFKAENFAAPTTTAIGATGS--- 193
Query: 145 GMLLSFTFKMILLAVGAW-------AVFL----RQPRATMPRIFIFRAIVVVFLFV 189
F + ++ +W ++ + P TMPR I ++V+ L+
Sbjct: 194 -----FMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYT 244
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 29.8 bits (67), Expect = 3.7
Identities = 7/67 (10%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 146 MLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFI--VQMT 203
L L+A L + ++++ + +L ++ T
Sbjct: 35 PFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYT 94
Query: 204 EGARATV 210
+ A++
Sbjct: 95 SASVASL 101
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 29.7 bits (67), Expect = 3.9
Identities = 23/156 (14%), Positives = 52/156 (33%), Gaps = 11/156 (7%)
Query: 92 YIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFT 151
+ I++++ + L+ + L L F NL + + G G+L +
Sbjct: 154 KASAKINSIITILKIIILLIFIILG-LFAFGFSNGNLFAPFNPGGGSFG----GILAAIL 208
Query: 152 FKMILLAVGA-WAVFL----RQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGA 206
G L + P+ T+PR I ++V+ L++ + + A
Sbjct: 209 L-AFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAA 267
Query: 207 RATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVL 242
A + ++ + + L + +L
Sbjct: 268 SAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLL 303
>gnl|CDD|224475 COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport
and metabolism].
Length = 342
Score = 29.6 bits (67), Expect = 3.9
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 20/96 (20%)
Query: 171 ATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARA----TVT---GEDV------LE 217
+ ++V+ L + + Y TVT G V LE
Sbjct: 5 KKKLLKTLLVLVLVLLLILGGVGYIGILYFFALSPPLGKNKKTVTIPPGSSVSEIGSELE 64
Query: 218 YRVVVSYASSFVDALLFIHYITVVLIEIRHLQPAFY 253
+ V+ A F L + L+ Y
Sbjct: 65 KQKVIKNARVFRLYLKY-------NPAAGSLKAGEY 93
>gnl|CDD|223032 PHA03283, PHA03283, envelope glycoprotein E; Provisional.
Length = 542
Score = 29.5 bits (66), Expect = 4.6
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 174 PRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVL 216
+ + F + + W V+++EGA A + G VL
Sbjct: 1 MELLRAARALAFFALITVLDAWGVHQVELSEGAWAMIDGRGVL 43
>gnl|CDD|224104 COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].
Length = 234
Score = 29.2 bits (66), Expect = 4.7
Identities = 13/83 (15%), Positives = 33/83 (39%)
Query: 83 TGLLFLCHRYIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSE 142
L+ L H + T +LS I L +LM++ + + + A + +
Sbjct: 139 VLLVLLYHSLPTGLATVLLSGILLLLSILMVSNIPFPSLKKLNALVRVVLLLAGILLLAL 198
Query: 143 CKGMLLSFTFKMILLAVGAWAVF 165
+L+ + + ++L+ + +
Sbjct: 199 LALVLILYPWLLLLVIASGYLLS 221
>gnl|CDD|183090 PRK11339, abgT, putative aminobenzoyl-glutamate transporter;
Provisional.
Length = 508
Score = 29.4 bits (66), Expect = 5.1
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 126 SNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQP--RATMPRIFI--FRA 181
LT Q+ L G L F + L+ + + LR P MP FI
Sbjct: 252 QTLTESQRFGLRIAGVVS----LLFIAAIALMVIPENGI-LRDPINHTVMPSPFIKGIVP 306
Query: 182 IVVVFLFVCTIAY 194
++++F FV ++AY
Sbjct: 307 LIILFFFVVSLAY 319
>gnl|CDD|220870 pfam10754, DUF2569, Protein of unknown function (DUF2569). This
family is conserved in bacteria. The function is not
known, but several members are annotated as being YdgK
or a homologue thereof.
Length = 149
Score = 28.4 bits (64), Expect = 5.1
Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 21/145 (14%)
Query: 96 VFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMI 155
+ V++ LS LL L L + +F+ T L S Q +A S +
Sbjct: 12 LLPAAGLVVTPLSALLSLLLYLMAIFTPGTWLLLSAQNSAFGILW------YGSVLLNLA 65
Query: 156 LLAVGAWAV--FLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGE 213
+ W F ++ PR++I + V + + F +
Sbjct: 66 MWVYTLWLAILFFKRRSIF-PRLYIIVLLAGVLFLA--VDAFAF----------NYLPFS 112
Query: 214 DVLEYRVVVSYASSFVDALLFIHYI 238
V + + S + A ++I Y
Sbjct: 113 PVSDQEALRELLSPLLGAAIWIPYF 137
>gnl|CDD|234530 TIGR04276, FxsC_Cterm, FxsC C-terminal domain. This model
describes a sequence region found regularly as the
C-terminal domain of a protein (where the N-terminal
domain resembles a TIR domain - see pfam13676) in the
vicinity of a proposed peptide-modifying radical
SAM/SPASM domain protein, FxsB (TIGR04269).
Length = 196
Score = 29.0 bits (65), Expect = 5.5
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 377 AFTHIKRTGHQEPVVGGVPMDSYEAAQAVFPSLARALQ-KYLRVTRQQPRHSVES 430
R+ H E GV + +A ++ A Q +YLR R P +V
Sbjct: 136 RRLSRGRSPHSELFRVGVR--TADAFGRWLATVVEAAQNRYLRHARTYPGSAVPG 188
>gnl|CDD|220546 pfam10060, DUF2298, Uncharacterized membrane protein (DUF2298).
This domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 413
Score = 29.3 bits (66), Expect = 5.8
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 154 MILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGE 213
LA+ A + R+P +P + R ++++ L + + F + + A
Sbjct: 241 YFGLALLALLLAYRRPYTLLPWLVFARELIIIPLL-SLVLFLPFILNFNPQAAGGG---- 295
Query: 214 DVLEYRVVVSYASSFVDALLFIHYITVVLI 243
+LE R S + ALL IH + + L
Sbjct: 296 GLLEER-------SDILALLAIHGLFLALF 318
>gnl|CDD|203280 pfam05579, Peptidase_S32, Equine arteritis virus serine
endopeptidase S32. Serine peptidases involved in
processing nidovirus polyprotein.
Length = 425
Score = 29.0 bits (65), Expect = 6.9
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 15/109 (13%)
Query: 95 SVFTGILSVISFLSPL----LMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSF 150
VF+ L ++ + +PL L++ L + +++ N+ S AL A S M F
Sbjct: 226 LVFSFALFLLCWFTPLSAQVLLIRL----LTAALNRNVISLAFYALGAGTSFLAEMW--F 279
Query: 151 TFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIA--YWLF 197
+ L A+G + +L PR + + V +A LF
Sbjct: 280 LGGIPLQALGFLSTYLFLPRVLV---VTSPVPFITIGAVHVLALLLSLF 325
>gnl|CDD|213897 TIGR04240, flavi_E_stem, flavivirus envelope glycoprotein E,
stem/anchor domain. This model describes the C-terminal
domain, containing a stem region followed by two
transmembrane anchor domains, of the envelope protein E.
This protein is cleaved from the large flavivirus
polyprotein, which yields three structural and seven
nonstructural proteins.
Length = 97
Score = 27.2 bits (61), Expect = 6.9
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 57 TAVTGNTSEQSGSLEDLALWPGGNQETGLLFLCHRYIGSVFTGILSVISFLSPLLM-LAL 115
A+ G+ + GS+ G T + H+ G F + +S+++ +L+ + L
Sbjct: 14 MAILGDAAWDFGSV--------GGVFTSIGKALHQVFGGAFRALFGGVSWITKILIGVLL 65
Query: 116 PKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGA 161
LG+ +S + L+ LA G G+LL T VGA
Sbjct: 66 IWLGL-NSRNTTLS----LTFLAVG----GILLFLT-----TGVGA 97
>gnl|CDD|216630 pfam01654, Bac_Ubq_Cox, Bacterial Cytochrome Ubiquinol Oxidase.
This family are the alternative oxidases found in many
bacteria which oxidise ubiquinol and reduce oxygen as
part of the electron transport chain. This family is the
subunit I of the oxidase E. coli has two copies of the
oxidase, bo and bd', both of which are represented here
In some nitrogen fixing bacteria, e.g. Klebsiella
pneumoniae this oxidase is responsible for removing
oxygen in microaerobic conditions, making the oxidase
required for nitrogen fixation. This subunit binds a
single b-haem, through ligands at His186 and Met393
(using SW:P11026 numbering). In addition His19 is a
ligand for the haem b found in subunit II.
Length = 432
Score = 29.0 bits (66), Expect = 7.4
Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 26/111 (23%)
Query: 154 MILLAVGAWAVFL-RQPRATMPRIFIFRAIVVVFL-FVCTIAYWLF-------FIVQ--- 201
++L + ++L R+ + R + ++++ L F+ A W+ + V
Sbjct: 327 FLMLLLALLGLWLTRRGKLLRSRWLLRLLVLMIPLPFIANEAGWIVTEVGRQPWTVYGLL 386
Query: 202 MTEGARATVTGEDVLEYRVVVSYASSF-----VDALLFIHYITVVLIEIRH 247
T A + V+ VL S + A+LF+ + ++L R
Sbjct: 387 RTADAVSPVSAGQVL---------FSLIGFTLLYAVLFVAEVYLLLRYARK 428
>gnl|CDD|223575 COG0501, HtpX, Zn-dependent protease with chaperone function
[Posttranslational modification, protein turnover,
chaperones].
Length = 302
Score = 28.7 bits (64), Expect = 8.0
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 144 KGMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLF--FIVQ 201
L+ +LLA+G + L A + I ++ F + LF +V
Sbjct: 20 SSFSLNLALTSLLLALGPSLLLLLGGIAAASALGRLLLIALLLAFAALLISLLFSKALVL 79
Query: 202 MTEGARATV 210
+ GA
Sbjct: 80 KSLGALTLS 88
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
Length = 451
Score = 28.7 bits (65), Expect = 8.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 388 EPVVGGV-PMDSYE-AAQAVFPSLARALQKY 416
EP++ G+ D + +A FP LA+A KY
Sbjct: 161 EPLLSGIYAGDIDTLSLRATFPQLAQAEDKY 191
>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit;
Reviewed.
Length = 571
Score = 29.0 bits (65), Expect = 8.5
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 356 EHDYERRVKKRRARLITATEEAFTHIKRTGHQEPVVGGVPMD 397
+H+Y+ R R+I +EAF HI TG PV+ +P D
Sbjct: 138 KHNYQVRKASDLPRII---KEAF-HIATTGRPGPVLIDIPKD 175
>gnl|CDD|237369 PRK13376, pyrB, bifunctional aspartate carbamoyltransferase
catalytic subunit/aspartate carbamoyltransferase
regulatory subunit; Provisional.
Length = 525
Score = 28.6 bits (64), Expect = 8.7
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 431 ILSHLAMCLSHDLSPRAFL----EPFLIPAPVLQNEK-EQKEIQSWSLICDELLTRPLQN 485
+LS L L D E F+IPAP++ K QKE + +P++N
Sbjct: 328 LLSMLGGALEADFDTSKKKEEPEEDFIIPAPIVHGTKGVQKEGKRG--------IKPIEN 379
Query: 486 GTV 488
GTV
Sbjct: 380 GTV 382
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.392
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,962,148
Number of extensions: 2673351
Number of successful extensions: 2657
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2641
Number of HSP's successfully gapped: 65
Length of query: 532
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 431
Effective length of database: 6,457,848
Effective search space: 2783332488
Effective search space used: 2783332488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)