RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy711
         (532 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 59/392 (15%), Positives = 112/392 (28%), Gaps = 131/392 (33%)

Query: 192 IAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLF---IHYITVVLIEIRHL 248
           +  +L ++  + E ++     + VL   + ++    F +  L    IH +   L++    
Sbjct: 61  VGKFLGYVSSLVEPSKVGQF-DQVL--NLCLTE---FENCYLEGNDIHALAAKLLQE--- 111

Query: 249 QPAFYIKVTRSPDGDSKSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPVSKSKKNH 308
                     +    +K               +++ Y T   +     +K   S   +  
Sbjct: 112 --------NDTTLVKTKE--------------LIKNYITARIMAKRPFDKKSNSALFRAV 149

Query: 309 SHSSFKFYDVDGGFNNSTLQSGGECNRSVSNVHPRRRDSSHNERFYEE-----HDYERRV 363
              + +   + GG      Q G                  + + ++EE       Y   V
Sbjct: 150 GEGNAQLVAIFGG------Q-G------------------NTDDYFEELRDLYQTYHVLV 184

Query: 364 KKRRARLITATEEAFTHIKRTGHQEPVV--------------GGVPMDSYEAAQAV-FP- 407
                 LI  + E  + + RT      V                 P   Y  +  +  P 
Sbjct: 185 G----DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240

Query: 408 ----SLAR--ALQKYLRVTRQQPRHSVESILSHL-----AMCLSHDLSPRAFLEP----- 451
                LA      K L  T  + R  ++    H      A+ ++   S  +F        
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300

Query: 452 ---FLI-------------PAPVLQNEKEQKE-IQSWSLICDELLTRPLQ------NGTV 488
              F I             P  +L++  E  E + S  L    L    +Q      N  +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360

Query: 489 FQLLQNEVSLICSVHALP-HFNISEEVIHPKS 519
               Q E+SL+        +  +S     P+S
Sbjct: 361 PAGKQVEISLVNG----AKNLVVSG---PPQS 385



 Score = 31.2 bits (70), Expect = 1.2
 Identities = 30/148 (20%), Positives = 44/148 (29%), Gaps = 59/148 (39%)

Query: 385  GHQEPVVGGVPMDSYE---AAQAVFPSLARA----LQKY----LRVTRQQPRHSVESILS 433
            G QE  +G   MD Y+   AAQ V+    RA       Y    L +    P     ++  
Sbjct: 1625 GSQEQGMG---MDLYKTSKAAQDVW---NRADNHFKDTYGFSILDIVINNPV----NLTI 1674

Query: 434  H-------------LAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEIQSWSLIC---DE 477
            H              AM     +  +   E            KE  E  + S        
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF---------KEINEHST-SYTFRSEKG 1724

Query: 478  LLTRPLQNGT----------VFQLLQNE 495
            LL+   Q  T           F+ L+++
Sbjct: 1725 LLSAT-QF-TQPALTLMEKAAFEDLKSK 1750


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 62/391 (15%), Positives = 110/391 (28%), Gaps = 144/391 (36%)

Query: 211 TGEDVLEYRVVVS-YASSFVDALLFIH---YITVVLI--EIRHLQPAFYIKVTRSPDGDS 264
           TGE   +Y+ ++S +  +FVD             +L   EI H        +  S D  S
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH--------IIMSKDAVS 62

Query: 265 KSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPVSKSKKNHSHSSFKFYDVDGGFNN 324
            +  +          W L     E  +   ++E++     + N     +KF         
Sbjct: 63  GTLRL---------FWTLLSKQEE--MVQKFVEEV----LRIN-----YKFL-------- 94

Query: 325 STLQSGGECNRSVSNVHPRRRDSSHNERFYEE-----HDYERRVKKR---RARLITATEE 376
                       +S +   +R  S   R Y E     ++  +   K    R +      +
Sbjct: 95  ------------MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 377 AFTHIKRTGHQEPVVGGVPMD----SYEAAQAV--------FP---------------SL 409
           A   ++    +  ++ G  +     ++ A                             ++
Sbjct: 143 ALLELRP--AKNVLIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 410 ARALQK-YLRVTR---------QQPRHSVESILSHLAMCLSHDLSPRAFLEPFLIPAPVL 459
              LQK   ++              +  + SI + L   L         L        VL
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--------VL 250

Query: 460 QNEKEQKEIQSWSLICDELL-TRP------LQNGTVFQLLQNEVS--------------- 497
            N +  K   +++L C  LL TR       L   T   +  +  S               
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 498 LICSVHALPHFNISEEV--IHPKSNRFVLRM 526
           L C    LP      EV   +P      L +
Sbjct: 311 LDCRPQDLP-----REVLTTNP----RRLSI 332



 Score = 35.2 bits (80), Expect = 0.066
 Identities = 81/541 (14%), Positives = 146/541 (26%), Gaps = 172/541 (31%)

Query: 4   LASKAGQESRSSKSKKDDKMAPFQTA-VTL-DDNRDGEVIE------VQILPQDENWGEN 55
           +A           S K      F+   + L + N    V+E       QI P   +  ++
Sbjct: 166 VALDV------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 56  TTAVTGNTSEQSGSLEDLALWPGGNQETGLLFL---CHRYIGSVFTG---IL------SV 103
           ++ +          L  L        E  LL L    +    + F     IL       V
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSK--PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 104 ISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWA 163
             FLS      +         +  LT  +  +LL    +C+   L               
Sbjct: 278 TDFLSAATTTHIS----LDHHSMTLTPDEVKSLLLKYLDCRPQDLP-------------- 319

Query: 164 VFLRQPRATMPRIFIFRAIVVVFL--FVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVV 221
              R+   T PR     +I+   +   + T   W                          
Sbjct: 320 ---REVLTTNPRRL---SIIAESIRDGLATWDNWK------------------------- 348

Query: 222 VSYASSFVDALLFIHYITVVLIEIRHLQPAFYIKVTRSPDGDSKSYAIGQLSIQRAAVWV 281
                   D L      T++   +  L+PA                              
Sbjct: 349 ----HVNCDKL-----TTIIESSLNVLEPA-----------------------------E 370

Query: 282 LQKYYTEFSIYNPYLEKLPV-------SKSKKNHSHSSFKFYDVDGGFNNSTLQSGGECN 334
            +K +   S++ P    +P            K+          V    +  +L       
Sbjct: 371 YRKMFDRLSVF-PPSAHIPTILLSLIWFDVIKSDVM------VVVNKLHKYSLVEKQPKE 423

Query: 335 RSVSNVHPRRRDSS-HNERFYEEHD-----YERRVKKRRARLITATEEA--FTHIKRTGH 386
            ++S +     +     E  Y  H      Y          LI    +   ++HI   GH
Sbjct: 424 STIS-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI---GH 479

Query: 387 QEPVVGGVPMDSYEAAQ--AVFPSLA---RALQKYLRVTRQQPRHSVESILSHLAMCLSH 441
                    + + E  +   +F  +    R L++ +R       ++  SIL+ L      
Sbjct: 480 H--------LKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTL-----Q 525

Query: 442 DLSPRAFLEPFLIP-APVLQNEKEQKEIQSWSLICDELLTR-PLQNGTVFQL-LQNEVSL 498
            L    F +P++    P  + E+    I  +    +E L      +  + ++ L  E   
Sbjct: 526 QLK---FYKPYICDNDP--KYERLVNAILDFLPKIEENLICSKYTD--LLRIALMAEDEA 578

Query: 499 I 499
           I
Sbjct: 579 I 579


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 33.3 bits (76), Expect = 0.27
 Identities = 21/103 (20%), Positives = 29/103 (28%), Gaps = 25/103 (24%)

Query: 312  SFKFYDVDGGFNNSTLQSGGECNRSVSNVHPRRRDSSHNERFYEEHDYERRVKKRRARLI 371
            SF       GF       G +       VHP     +  E  Y E  Y  +V  R     
Sbjct: 1444 SF-------GF-------GQK-GGQAIVVHPDYLYGAITEDRYNE--YVAKVSAREKSAY 1486

Query: 372  TATEEAFTHIKRTGHQEPVVGGVPMDSYEAAQAVF--PSLARA 412
                          ++  V       + E  + V+  P LAR 
Sbjct: 1487 KFFHNGM-----IYNKLFVSKEHAPYTDELEEDVYLDP-LARV 1523


>1muk_A Minor core protein lambda 3; single subunit polymerase fold, fingers,
            PALM, thumb, right hand configuration, viral protein;
            2.50A {Reovirus SP} SCOP: e.8.1.4 PDB: 1mwh_A* 1n1h_A*
            1n35_A* 1n38_A* 1uon_A* 2cse_1
          Length = 1267

 Score = 31.6 bits (71), Expect = 0.79
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 9/158 (5%)

Query: 283  QKYYTEFSIYNPYL-EKLPVSKSKKNHSHSSFKFYDVDGGFNNSTLQSG---GECNRSVS 338
               Y+  S+  P +   +  +    +   + F   D    FN   L  G    +  R+  
Sbjct: 897  LGMYSWISLIRPLMTRWMVANGYVTDRCSTVFGNADYRRCFNELKLYQGYYMAQLPRNPK 956

Query: 339  NVHPRRRDSSHNERFYEE-HDYERRVKKRRARLITATEEAFTHIKRTGHQEPVVGGVPMD 397
                R       E+F +   DY  +  + ++R++    E   +     H  P +  VP  
Sbjct: 957  K-SGRAASREVREQFTQALSDYLMQNPELKSRVLRGRSEWEKYGAGIIHNPPSLFDVPHK 1015

Query: 398  SYEAAQ-AVFPSLA--RALQKYLRVTRQQPRHSVESIL 432
             Y+ AQ A   +      + + L   R+    S   +L
Sbjct: 1016 WYQGAQEAAIATREELAEMDETLMRARRHSYSSFSKLL 1053


>3hwo_A Isochorismate synthase ENTC; chorismate-utilizing enzymes,
           siderophore, enterobactin, enterobactin biosynthesis,
           ION T iron, iron transport; HET: ISC; 2.30A {Escherichia
           coli}
          Length = 394

 Score = 30.7 bits (70), Expect = 1.0
 Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 4/86 (4%)

Query: 366 RRARLITATEEAFTHIKRTGHQEPV-VGGVPMDSYEAAQAVFPSLARALQKYLRVTRQQP 424
             +         F   K  G + PV VG +P D  + +    P    + Q + R  +Q  
Sbjct: 52  PDSPFQQKLAALFADAKAQGIKNPVMVGAIPFDPRQPSSLYIP---ESWQSFSRQEKQAS 108

Query: 425 RHSVESILSHLAMCLSHDLSPRAFLE 450
                   S   +          F +
Sbjct: 109 ARRFTRSQSLNVVERQAIPEQTTFEQ 134


>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
           glutamate-GABA antiporter, transport protein; 3.10A
           {Escherichia coli} PDB: 4dji_A
          Length = 511

 Score = 31.0 bits (70), Expect = 1.1
 Identities = 18/138 (13%), Positives = 41/138 (29%), Gaps = 28/138 (20%)

Query: 92  YIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFT 151
               +   +  + S    +L        +   +   LT                 L ++ 
Sbjct: 339 VTLVISQLV--ITSIALIILTNTGGGNNMSFLIALALTVV-------------IYLCAY- 382

Query: 152 FKMILLAVGAWAVFLRQPRATMPRIFIF-------RAIVVVFLFVCTIAYWLFFIVQMTE 204
               +L +G   + L+ P   + R F           + +V L    +A+ + F+     
Sbjct: 383 ---FMLFIGYIVLVLKHPD--LKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNI 437

Query: 205 GARATVTGEDVLEYRVVV 222
              +T    ++L    +V
Sbjct: 438 QGDSTDMYVELLVVSFLV 455


>3os6_A Isochorismate synthase DHBC; structural genomics, center for
           structural genomics of infec diseases, csgid, isomerase;
           HET: MSE 15P; 2.40A {Bacillus anthracis}
          Length = 399

 Score = 30.8 bits (70), Expect = 1.2
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 368 ARLITATEEAFTHIKRTGHQEP-VVGGVPMDSYEAAQAVFPSLARALQK 415
                  +    + K+ G+  P VVG +P D  +  Q + P  +R  ++
Sbjct: 48  ESFPELVQAVLRNAKQAGNPNPIVVGALPFDRRKEVQLIVPEYSRISER 96


>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
           transport, SGLT, ION TRAN membrane, sodium transport,
           symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
          Length = 530

 Score = 30.5 bits (69), Expect = 1.8
 Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 24/147 (16%)

Query: 92  YIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFT 151
            IG  F  I      +SP  +LA+  LG+F   T++     K A++       G++ S  
Sbjct: 390 GIGQAFQYIQEYTGLVSP-GILAVFLLGLFWKKTTS-----KGAII-------GVVASI- 435

Query: 152 FKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVT 211
                     +  F+      MP         ++F  V      L   +   +    +VT
Sbjct: 436 ------PFALFLKFMPLS---MP-FMDQMLYTLLFTMVVIAFTSLSTSINDDDPKGISVT 485

Query: 212 GEDVLEYRVVVSYASSFVDALLFIHYI 238
               +  R     A   +  L  ++ +
Sbjct: 486 SSMFVTDRSFNIAAYGIMIVLAVLYTL 512


>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor,
           adipogenesis, RXRA, nucleus, transcription; HET: DKA;
           1.52A {Homo sapiens} PDB: 1i7i_A* 3ty0_A* 1zeo_A*
           2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A*
           2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A*
           3g9e_A* 3gbk_A* 3ia6_A* ...
          Length = 269

 Score = 29.0 bits (65), Expect = 3.9
 Identities = 10/77 (12%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 409 LARALQKYLRVTRQQPRHSVESILSHLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEI 468
           L  +  K   +T+ + R  +    +  +  + +D++     E  +    +   +++ KE+
Sbjct: 11  LYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEV 70

Query: 469 QSWSL-ICDELLTRPLQ 484
                  C       +Q
Sbjct: 71  AIRIFQGCQFRSVEAVQ 87


>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats,
           LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus}
           PDB: 2xq2_B 2kpe_A
          Length = 593

 Score = 29.0 bits (65), Expect = 4.4
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 24/146 (16%)

Query: 93  IGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTF 152
           IG  F  I      +SP  +LA+  LG+F   T++     K A++       G++ S   
Sbjct: 420 IGQCFQYIQEYTGLVSP-GILAVFLLGLFWKKTTS-----KGAII-------GVVASI-- 464

Query: 153 KMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTG 212
                    +  F+      MP         ++F  V      L   +   +    +VT 
Sbjct: 465 -----PFALFLKFMPLS---MP-FMDQMLYTLLFTMVVIAFTSLSTSINDDDPKGISVTS 515

Query: 213 EDVLEYRVVVSYASSFVDALLFIHYI 238
              +  R     A   +  L  ++ +
Sbjct: 516 SMFVTDRSFNIAAYGIMIVLAVLYTL 541


>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
           protein, transport protein, Cys-loop receptor, LIGA ION
           channel, neurotransmitter receptor; HET: NAG IVM LMT
           UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
           3rif_A*
          Length = 347

 Score = 28.6 bits (64), Expect = 5.0
 Identities = 32/129 (24%), Positives = 42/129 (32%), Gaps = 11/129 (8%)

Query: 87  FLCHRYIGSVFTGILSVISF-LSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKG 145
           +L   YI S    I+S +SF      + A   LGV + +T    S    + L   S  K 
Sbjct: 216 YLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKA 275

Query: 146 ----MLLSFTFKMILLAVGAWAVFLRQPRATMPRI------FIFRAIVVVFLFVCTIAYW 195
               +    TF    L   A    +     T           I RA+  V  FV  I YW
Sbjct: 276 IDVWIGACMTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFVFNILYW 335

Query: 196 LFFIVQMTE 204
             F      
Sbjct: 336 SRFGHHHHH 344


>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM,
           nitrilase, nucleotide-binding protein, cancer; 2.80A
           {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
          Length = 440

 Score = 28.5 bits (64), Expect = 5.7
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 326 TLQSGGECNRSVSNVH----PRRRDSSHNERFYEEHDYERRVKKRRAR 369
            +Q G +  ++V +VH    PRR     +   Y++     +  +R+ R
Sbjct: 377 CVQDGKDAGQTVPHVHIHILPRRAGDFGDNEIYQKLASHDKEPERKPR 424


>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2,
           protein struct initiative; 2.48A {Mesorhizobium loti}
          Length = 389

 Score = 28.4 bits (64), Expect = 6.2
 Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 6/44 (13%)

Query: 342 PRRRDSSHNERFYEE----HDYE--RRVKKRRARLITATEEAFT 379
              R++ H+  + E+    HD++  R ++         + E   
Sbjct: 211 VAIREAGHDLLWVEDPILRHDHDGLRTLRHAVTWTQINSGEYLD 254


>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
           transport, major facilitator SUPE transporter, MFS;
           3.30A {Streptococcus thermophilus}
          Length = 491

 Score = 28.2 bits (63), Expect = 7.8
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 145 GMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFF 198
             +   T   I + V  +A  +   + T       R +  + LF+  + +W   
Sbjct: 248 AYINLLTIVAIAIPVFYFAWMISSVKVT--STEHLRVVSYIPLFIAAVLFWAIE 299


>2ei4_A AR 2, archaerhodopsin-2; membrane protein, retinal,
           bacterioruberin, proton pump, TRA protein; HET: GLC RET
           22B L2P; 2.10A {Halobacterium SP} PDB: 1vgo_A* 2z55_A*
           1uaz_A*
          Length = 253

 Score = 27.7 bits (61), Expect = 9.6
 Identities = 24/169 (14%), Positives = 47/169 (27%), Gaps = 7/169 (4%)

Query: 148 LSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGAR 207
           L      +L+ +G +    R    T       R    + + V  IA   +    M  G  
Sbjct: 15  LWLGIGTLLMLIGTFYFIARGWGVTDKE---AREYYAITILVPGIASAAYL--AMFFGIG 69

Query: 208 ATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLIEIRHLQPAFYIKVTRSPDGDSKSY 267
            T           +  Y + + D L     + + L  +  +       +         + 
Sbjct: 70  VTEVELASGTVLDI--YYARYADWLFTTPLLLLDLALLAKVDRVTIGTLIGVDALMIVTG 127

Query: 268 AIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPVSKSKKNHSHSSFKFY 316
            IG LS    A +    + T   ++  Y     +  +    S      +
Sbjct: 128 LIGALSKTPLARYTWWLFSTIAFLFVLYYLLTSLRSAAAKRSEEVRSTF 176


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,870,625
Number of extensions: 470717
Number of successful extensions: 947
Number of sequences better than 10.0: 1
Number of HSP's gapped: 938
Number of HSP's successfully gapped: 23
Length of query: 532
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 434
Effective length of database: 3,965,535
Effective search space: 1721042190
Effective search space used: 1721042190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.1 bits)