RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy711
         (532 letters)



>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
            10891]}
          Length = 1264

 Score = 32.3 bits (73), Expect = 0.17
 Identities = 32/175 (18%), Positives = 58/175 (33%), Gaps = 14/175 (8%)

Query: 283  QKYYTEFSIYNPYLEKLPVSK-SKKNHSHSSFKFYDVDGGFNNSTLQSG---GECNRSVS 338
               Y+  S+  P + +  V+     +   + F   D    FN   L  G    +  R+  
Sbjct: 896  LGMYSWISLIRPLMTRWMVANGYVTDRCSTVFGNADYRRCFNELKLYQGYYMAQLPRNPK 955

Query: 339  NVHPRRRDSSHNERFYEE-HDYERRVKKRRARLITATEEAFTHIKRTGHQEPVVGGVPMD 397
                R       E+F +   DY  +  + ++R++    E   +     H  P +  VP  
Sbjct: 956  K-SGRAASREVREQFTQALSDYLMQNPELKSRVLRGRSEWEKYGAGIIHNPPSLFDVPHK 1014

Query: 398  SYEAAQAV---FPSLARALQKYLRVTRQQPRHSVESILS-----HLAMCLSHDLS 444
             Y+ AQ            + + L   R+    S   +L         MC + + S
Sbjct: 1015 WYQGAQEAAIATREELAEMDETLMRARRHSYSSFSKLLEAYLLVKWRMCEAREPS 1069


>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
           receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 265

 Score = 26.5 bits (58), Expect = 7.5
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 16/69 (23%)

Query: 291 IYNPYLEKLPVSKSK-------KNHSHSSFKFYDVDGGFNNSTLQ---SGGECNRSVSNV 340
           IYN YL+   ++K K       K    + F  +D++      TL     G    + V+ +
Sbjct: 8   IYNAYLKNFNMTKKKARSILTGKASHTAPFVIHDIE------TLWQAEKGLVWKQLVNGL 61

Query: 341 HPRRRDSSH 349
            P +  S H
Sbjct: 62  PPYKEISVH 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0574    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,881,793
Number of extensions: 86502
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 4
Length of query: 532
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 442
Effective length of database: 1,171,896
Effective search space: 517978032
Effective search space used: 517978032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)