Query psy7110
Match_columns 86
No_of_seqs 103 out of 353
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 18:26:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3385|consensus 99.9 2.2E-22 4.7E-27 137.3 4.8 81 4-85 1-87 (118)
2 PF05739 SNARE: SNARE domain; 99.3 1.5E-11 3.3E-16 73.3 6.2 55 30-85 1-55 (63)
3 KOG3202|consensus 99.2 4.9E-11 1.1E-15 89.5 6.2 59 25-85 145-203 (235)
4 cd00193 t_SNARE Soluble NSF (N 99.1 5.9E-10 1.3E-14 64.6 6.0 55 30-85 3-57 (60)
5 smart00397 t_SNARE Helical reg 98.9 7.2E-09 1.6E-13 60.7 6.8 60 25-85 4-63 (66)
6 KOG3065|consensus 98.6 1.6E-07 3.5E-12 71.9 7.5 60 25-85 210-269 (273)
7 PF09753 Use1: Membrane fusion 93.4 0.35 7.7E-06 35.8 6.4 55 30-85 164-218 (251)
8 PF12352 V-SNARE_C: Snare regi 90.1 2.4 5.1E-05 25.0 6.3 53 27-81 3-55 (66)
9 PF04102 SlyX: SlyX; InterPro 87.3 4.9 0.00011 24.6 6.5 49 32-81 3-51 (69)
10 PRK00846 hypothetical protein; 86.7 6.2 0.00013 25.2 6.9 52 29-81 9-60 (77)
11 PF07889 DUF1664: Protein of u 85.3 5.6 0.00012 27.5 6.6 50 29-79 64-113 (126)
12 KOG0810|consensus 82.7 4.9 0.00011 31.3 6.1 55 25-81 199-253 (297)
13 PRK00736 hypothetical protein; 77.1 14 0.00031 22.6 6.4 47 33-80 5-51 (68)
14 PF07889 DUF1664: Protein of u 74.9 21 0.00045 24.7 6.6 49 26-76 76-124 (126)
15 PRK04325 hypothetical protein; 73.4 19 0.00042 22.4 6.3 47 33-80 9-55 (74)
16 PRK00295 hypothetical protein; 72.7 19 0.00041 22.0 6.3 47 33-80 5-51 (68)
17 PRK02119 hypothetical protein; 69.6 24 0.00052 21.9 6.7 49 31-80 7-55 (73)
18 PRK02793 phi X174 lysis protei 69.1 25 0.00053 21.8 6.7 49 31-80 6-54 (72)
19 KOG2678|consensus 68.8 18 0.0004 27.7 5.7 53 32-85 154-206 (244)
20 COG5325 t-SNARE complex subuni 66.6 29 0.00062 27.3 6.4 56 28-84 190-245 (283)
21 PRK04406 hypothetical protein; 65.8 30 0.00066 21.6 6.8 49 31-80 9-57 (75)
22 PF04728 LPP: Lipoprotein leuc 65.2 28 0.00061 21.0 6.0 38 31-69 15-52 (56)
23 PF11902 DUF3422: Protein of u 64.3 21 0.00045 29.1 5.6 49 32-81 311-360 (420)
24 PF05957 DUF883: Bacterial pro 64.2 33 0.00072 21.5 7.1 53 26-78 2-54 (94)
25 PF01519 DUF16: Protein of unk 63.7 42 0.00092 22.6 6.7 44 35-79 55-98 (102)
26 KOG0811|consensus 60.2 36 0.00078 26.3 5.9 49 32-81 179-227 (269)
27 PF05531 NPV_P10: Nucleopolyhe 56.0 37 0.00081 21.6 4.6 47 32-79 17-66 (75)
28 PF14227 UBN2_2: gag-polypepti 55.3 21 0.00045 22.8 3.5 48 33-82 43-90 (119)
29 cd00513 Ribosomal_L32_L32e Rib 52.4 8.8 0.00019 26.0 1.3 16 1-16 24-39 (107)
30 KOG0878|consensus 51.9 12 0.00027 26.0 2.0 16 1-16 40-55 (124)
31 COG2900 SlyX Uncharacterized p 51.5 61 0.0013 20.6 6.6 51 29-80 4-54 (72)
32 KOG1666|consensus 49.6 90 0.002 23.7 6.5 57 24-81 5-69 (220)
33 PF10267 Tmemb_cc2: Predicted 49.0 91 0.002 25.4 6.8 57 24-80 260-316 (395)
34 PF12718 Tropomyosin_1: Tropom 47.7 87 0.0019 21.6 5.8 46 35-81 16-61 (143)
35 PTZ00159 60S ribosomal protein 47.2 11 0.00025 26.4 1.3 16 1-16 39-54 (133)
36 PRK09973 putative outer membra 46.6 80 0.0017 20.5 5.9 36 32-68 37-72 (85)
37 KOG2991|consensus 45.9 1.2E+02 0.0025 24.2 6.7 52 25-77 220-279 (330)
38 PRK01371 sec-independent trans 44.8 94 0.002 21.8 5.6 47 33-79 27-92 (137)
39 PRK08562 rpl32e 50S ribosomal 44.1 14 0.0003 25.7 1.3 16 1-16 41-56 (125)
40 PF08518 GIT_SHD: Spa2 homolog 43.3 31 0.00067 18.5 2.3 16 43-58 11-26 (31)
41 PRK09973 putative outer membra 41.7 98 0.0021 20.1 5.6 46 34-80 25-70 (85)
42 PRK12766 50S ribosomal protein 38.7 18 0.00039 27.5 1.3 16 1-16 140-155 (232)
43 PF09824 ArsR: ArsR transcript 38.6 23 0.0005 25.6 1.8 42 43-85 104-145 (160)
44 PRK04654 sec-independent trans 38.5 1.1E+02 0.0023 23.2 5.3 35 34-70 28-62 (214)
45 PF05008 V-SNARE: Vesicle tran 38.4 88 0.0019 18.7 5.0 41 34-75 4-52 (79)
46 PF01655 Ribosomal_L32e: Ribos 38.1 13 0.00029 25.1 0.5 16 1-16 26-41 (110)
47 PF08372 PRT_C: Plant phosphor 37.7 68 0.0015 22.8 4.1 47 25-79 39-90 (156)
48 KOG0809|consensus 37.0 94 0.002 24.7 5.1 51 32-83 217-267 (305)
49 PRK10884 SH3 domain-containing 36.8 1.7E+02 0.0037 21.5 6.5 47 25-72 96-142 (206)
50 KOG3251|consensus 35.4 1.9E+02 0.0042 21.8 7.4 69 9-79 105-174 (213)
51 PRK01919 tatB sec-independent 35.3 1.8E+02 0.0038 21.2 5.9 24 36-59 30-53 (169)
52 PF08181 DegQ: DegQ (SacQ) fam 33.8 98 0.0021 17.9 4.7 33 41-74 5-37 (46)
53 COG4949 Uncharacterized membra 33.8 1.1E+02 0.0024 25.0 5.0 50 32-82 311-361 (424)
54 cd00179 SynN Syntaxin N-termin 33.5 1.2E+02 0.0026 19.9 4.6 26 32-57 12-37 (151)
55 PF04912 Dynamitin: Dynamitin 33.4 1.5E+02 0.0032 23.3 5.8 46 37-83 333-378 (388)
56 PRK01770 sec-independent trans 33.2 1.8E+02 0.004 21.1 5.7 39 33-73 27-65 (171)
57 PF12548 DUF3740: Sulfatase pr 32.7 57 0.0012 23.0 3.0 22 28-49 108-129 (145)
58 COG1717 RPL32 Ribosomal protei 32.5 95 0.0021 21.9 4.0 16 1-16 46-61 (133)
59 PF07097 DUF1359: Protein of u 32.3 1.6E+02 0.0034 19.7 4.9 35 33-68 9-43 (102)
60 smart00502 BBC B-Box C-termina 32.3 1.3E+02 0.0027 18.6 5.0 11 63-73 62-72 (127)
61 PF08614 ATG16: Autophagy prot 32.3 1.8E+02 0.004 20.5 6.0 45 32-77 115-159 (194)
62 COG5074 t-SNARE complex subuni 31.1 1.5E+02 0.0032 23.2 5.2 47 34-81 186-232 (280)
63 PRK10604 sensor protein RstB; 31.1 1.6E+02 0.0035 22.7 5.5 53 6-58 172-225 (433)
64 PF04728 LPP: Lipoprotein leuc 31.0 1.2E+02 0.0027 18.2 6.7 46 34-80 4-49 (56)
65 PF05082 Rop-like: Rop-like; 30.8 1.2E+02 0.0027 18.8 4.0 24 34-57 3-26 (66)
66 PF04880 NUDE_C: NUDE protein, 30.7 35 0.00077 24.6 1.7 36 25-61 17-52 (166)
67 KOG0860|consensus 30.4 1.8E+02 0.004 19.9 6.5 56 25-82 32-87 (116)
68 PRK15396 murein lipoprotein; P 30.4 1.5E+02 0.0032 18.8 5.8 35 34-69 40-74 (78)
69 PF05565 Sipho_Gp157: Siphovir 30.3 1.9E+02 0.0041 20.1 6.9 60 25-85 32-91 (162)
70 PF12495 Vip3A_N: Vegetative i 30.0 45 0.00098 23.8 2.1 48 32-80 44-105 (177)
71 TIGR03752 conj_TIGR03752 integ 29.9 2.1E+02 0.0044 24.1 6.2 34 25-58 76-109 (472)
72 PF15136 UPF0449: Uncharacteri 29.5 1.5E+02 0.0032 19.8 4.4 34 24-57 62-95 (97)
73 PRK10132 hypothetical protein; 27.5 1.9E+02 0.0041 19.2 6.7 29 25-53 8-36 (108)
74 PF12718 Tropomyosin_1: Tropom 27.1 2.1E+02 0.0046 19.6 6.1 50 35-85 51-103 (143)
75 PF05791 Bacillus_HBL: Bacillu 27.1 2.3E+02 0.005 20.0 6.9 37 36-73 106-142 (184)
76 PF04108 APG17: Autophagy prot 26.3 3.4E+02 0.0073 21.7 6.7 54 31-85 42-96 (412)
77 PRK00404 tatB sec-independent 26.3 2.4E+02 0.0052 19.9 5.3 39 33-73 27-65 (141)
78 PRK04098 sec-independent trans 25.9 2.6E+02 0.0055 20.1 5.4 35 34-70 28-62 (158)
79 PF00261 Tropomyosin: Tropomyo 25.6 1.2E+02 0.0026 22.1 3.8 50 35-85 17-66 (237)
80 PF01213 CAP_N: Adenylate cycl 25.0 2.3E+02 0.0049 22.2 5.4 41 37-81 52-92 (312)
81 PF12302 DUF3629: Protein of u 25.0 2.3E+02 0.005 21.5 5.2 22 51-73 95-116 (253)
82 PF07326 DUF1466: Protein of u 24.8 83 0.0018 24.1 2.8 41 10-56 183-224 (233)
83 KOG1853|consensus 24.8 1.5E+02 0.0032 23.6 4.2 36 25-61 150-185 (333)
84 PRK10884 SH3 domain-containing 24.3 2.9E+02 0.0063 20.2 6.9 30 27-56 112-141 (206)
85 PF04380 BMFP: Membrane fusoge 23.9 1.9E+02 0.0041 17.9 5.0 50 34-83 11-64 (79)
86 smart00503 SynN Syntaxin N-ter 23.1 2E+02 0.0043 17.9 4.6 25 32-56 14-38 (117)
87 PF03908 Sec20: Sec20; InterP 22.7 2E+02 0.0044 17.9 5.8 35 48-83 23-57 (92)
88 PF05069 Phage_tail_S: Phage v 21.3 2.5E+02 0.0054 18.8 4.5 32 30-61 5-36 (148)
89 COG4942 Membrane-bound metallo 21.1 4.5E+02 0.0098 21.7 6.6 53 29-82 41-93 (420)
90 PF01519 DUF16: Protein of unk 20.6 2.8E+02 0.006 18.7 5.9 48 37-85 50-97 (102)
91 KOG3650|consensus 20.5 2.9E+02 0.0063 18.9 4.8 21 35-55 72-92 (120)
92 COG5345 Uncharacterized protei 20.4 94 0.002 25.0 2.5 17 38-54 228-244 (358)
93 PF13949 ALIX_LYPXL_bnd: ALIX 20.3 3.5E+02 0.0077 19.7 5.9 49 34-83 23-71 (296)
94 PRK10404 hypothetical protein; 20.2 2.7E+02 0.0058 18.2 5.9 48 32-79 8-55 (101)
No 1
>KOG3385|consensus
Probab=99.86 E-value=2.2e-22 Score=137.33 Aligned_cols=81 Identities=43% Similarity=0.614 Sum_probs=72.0
Q ss_pred hhhhhccCCCCCC----CCCCCCCc--chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcch
Q psy7110 4 RMRRQHAGNYYEP----VPNQFDGG--DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGF 77 (86)
Q Consensus 4 ~~~~~~~~~~~~~----~~~~~~~~--~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~ 77 (86)
||+|.++.++-+| ...++|+| +.+|.|||+.++.|..||.+||.|+++||+||+.||+ +||.|+++||++.++
T Consensus 1 r~~R~g~~dg~~~l~~~~~~a~ss~~~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnk-lld~mdddfdsts~~ 79 (118)
T KOG3385|consen 1 RGSRFGLFDGSNGLEDGVSRASSSSHLASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNK-LLDGMDDDFDSTSGF 79 (118)
T ss_pred CCcccCcccCCCcccccccccCchhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHH-HHHHhccchhhhHHH
Confidence 6889888887666 33333444 7888999999999999999999999999999999999 999999999999999
Q ss_pred hhhhhccC
Q psy7110 78 LNNSMARG 85 (86)
Q Consensus 78 L~~tm~Rl 85 (86)
|++||+|+
T Consensus 80 L~gtm~r~ 87 (118)
T KOG3385|consen 80 LSGTMGRL 87 (118)
T ss_pred HHHHHHHH
Confidence 99999986
No 2
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.27 E-value=1.5e-11 Score=73.27 Aligned_cols=55 Identities=35% Similarity=0.499 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 30 ENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 30 QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
|+|+.|+.|...|..||+++.+|+.||..||. +||.|++.|+.|...|..++++|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~-~ld~i~~~vd~~~~~l~~~~~~l 55 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNE-MLDRIEDNVDRANENLKKGNKKL 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999 99999999999999999998875
No 3
>KOG3202|consensus
Probab=99.18 E-value=4.9e-11 Score=89.49 Aligned_cols=59 Identities=27% Similarity=0.483 Sum_probs=54.7
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
..+++| |+.++.|++.|.++|++|..||+|++.||. +||+|++.||.|..+|.+.++|+
T Consensus 145 qm~~eQ-De~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~-llDdl~~e~d~t~srl~~~~~~l 203 (235)
T KOG3202|consen 145 QMLQEQ-DEGLDGLSATVQRLKGMALAMGEELEEQGR-LLDDLDNEMDRTESRLDRVMKRL 203 (235)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556 777999999999999999999999999999 99999999999999999999986
No 4
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.06 E-value=5.9e-10 Score=64.59 Aligned_cols=55 Identities=31% Similarity=0.438 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 30 ENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 30 QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
+.++.++.|...|..|++++.+|+.||..|+. +||.+.+.|+.+...++.+.+||
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~-~ld~i~~~~~~~~~~~~~~~~~l 57 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGE-LLDRIEDNVDNADVNVKRANKRL 57 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999999999999999999 99999999999999999999886
No 5
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=98.92 E-value=7.2e-09 Score=60.71 Aligned_cols=60 Identities=28% Similarity=0.428 Sum_probs=54.7
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
..+.++.++.++.|+..|..|++++.+|+.||..|+. +||.+.+.++.+...++.+.+++
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~-~ld~i~~~~d~~~~~~~~~~~~l 63 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGE-QLDRIEDNVDDADVNLKKANKRL 63 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHH
Confidence 3445556778999999999999999999999999999 99999999999999999998876
No 6
>KOG3065|consensus
Probab=98.61 E-value=1.6e-07 Score=71.87 Aligned_cols=60 Identities=27% Similarity=0.406 Sum_probs=56.9
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
...|.+.|+.|++|+..+.+||.||.++|.||+.||. .||.|.+..|+....+..+.+|+
T Consensus 210 ~~~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~-~Ld~I~~k~d~~d~~v~~~n~R~ 269 (273)
T KOG3065|consen 210 PAAEDEIDENLDQLSAILGRLKNMALDMGSEIESQNE-RLDRIEDKVDRLDLRVDKANKRA 269 (273)
T ss_pred ChhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHhHHHHHHHhhhhHHHHHHHHH
Confidence 6778888999999999999999999999999999999 99999999999999999988875
No 7
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=93.43 E-value=0.35 Score=35.84 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 30 ENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 30 QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
..|.+.++|..=.+.||+-+..+++=++..+. .|+.....+|+....|+....||
T Consensus 164 ~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~-~L~~~~~~~d~n~~~l~~~~~rl 218 (251)
T PF09753_consen 164 LQEDLTEEMLSLARQLKENSLAFSQILKEDNK-VLDRTEEGLDRNLSSLKRESKRL 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33668899999999999999999999999999 99999999999999999888776
No 8
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=90.09 E-value=2.4 Score=25.03 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=42.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 27 IHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 27 le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
+..+++ .|+.=...+.-.-++|.+|-.++..|+. .|......++.+...|..+
T Consensus 3 l~~e~~-~L~~s~~~~~e~~~~g~~~l~~L~~Qre-~L~~~~~kl~~i~~~l~~s 55 (66)
T PF12352_consen 3 LLRESD-SLQRSHRMADETEEIGAATLEDLRSQRE-QLKRVRDKLDDIDSNLPKS 55 (66)
T ss_dssp HHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHH
Confidence 445544 4677777888888999999999999999 9999888888887777654
No 9
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=87.33 E-value=4.9 Score=24.57 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 32 D~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
++.|..|..++.-+-..-..+.+.|-.|.. .|+.|...+.....+|+..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~-~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQR-QIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999 9999999998888877653
No 10
>PRK00846 hypothetical protein; Provisional
Probab=86.68 E-value=6.2 Score=25.19 Aligned_cols=52 Identities=8% Similarity=-0.052 Sum_probs=46.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 29 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 29 ~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
+..++.++.|..+|.-+-..-..+.+.|-.|.. .|+.|...+.....+|+..
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~-~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARL-TGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 345667999999999999999999999999999 9999999998888888754
No 11
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=85.30 E-value=5.6 Score=27.50 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=37.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhh
Q psy7110 29 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLN 79 (86)
Q Consensus 29 ~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~ 79 (86)
.+.-++|+.|..|+...+.++..|.+||..=-. -++.+..+++..+..+.
T Consensus 64 khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~-dv~~i~~dv~~v~~~V~ 113 (126)
T PF07889_consen 64 KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRE-DVSQIGDDVDSVQQMVE 113 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 344566788888888888888888888877777 77777777777665543
No 12
>KOG0810|consensus
Probab=82.74 E-value=4.9 Score=31.29 Aligned_cols=55 Identities=16% Similarity=0.422 Sum_probs=47.0
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
..+++.-++ +-.|...+.-|.+|..+|--.|+.|-. +||.+...+.++..-+...
T Consensus 199 ~Eiq~Rh~~-ik~LEksi~ELhqlFlDMa~LVe~QgE-mvd~IE~nV~~A~~~V~~g 253 (297)
T KOG0810|consen 199 AEIQERHDE-IKKLEKSIRELHQLFLDMAVLVESQGE-MVDRIENNVENAVDYVEQG 253 (297)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH
Confidence 556666565 689999999999999999999999999 9999999998887665543
No 13
>PRK00736 hypothetical protein; Provisional
Probab=77.13 E-value=14 Score=22.61 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhh
Q psy7110 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (86)
Q Consensus 33 ~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~ 80 (86)
+.+..|..+|..+-..-..+.+.|-.|.+ -|+.|...+.....+|+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~-~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWK-TVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999 999998888777766654
No 14
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=74.95 E-value=21 Score=24.67 Aligned_cols=49 Identities=10% Similarity=0.437 Sum_probs=36.3
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcc
Q psy7110 26 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGG 76 (86)
Q Consensus 26 ~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~ 76 (86)
.++++ .+...++...|..++.=...|+++++.=+. +...|+..+++.+.
T Consensus 76 klDe~-~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~-~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 76 KLDEQ-KEISKQIKDEVTEVREDVSQIGDDVDSVQQ-MVEGLEGKIDEIEE 124 (126)
T ss_pred hHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Confidence 35555 445677888888888888888888888888 88888877776543
No 15
>PRK04325 hypothetical protein; Provisional
Probab=73.40 E-value=19 Score=22.36 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhh
Q psy7110 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (86)
Q Consensus 33 ~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~ 80 (86)
+.+..|..+|..+-..-..+.+.|-.|.. .|+.|...+.....+|+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~-~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQ-TLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999 999998887777666654
No 16
>PRK00295 hypothetical protein; Provisional
Probab=72.73 E-value=19 Score=22.02 Aligned_cols=47 Identities=4% Similarity=0.006 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhh
Q psy7110 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (86)
Q Consensus 33 ~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~ 80 (86)
+.+..|..+|.-+-..-..+.+.|-.|.+ .|+.|...+.....+|+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~-~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQR-VIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999 999998888877666654
No 17
>PRK02119 hypothetical protein; Provisional
Probab=69.56 E-value=24 Score=21.89 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhh
Q psy7110 31 NEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (86)
Q Consensus 31 ND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~ 80 (86)
.++++..|..+|.-+-..-..+.+.|-.|.+ -|+.|...+.....+|+.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~-~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQF-VIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 3556899999999999999999999999999 999998888877666654
No 18
>PRK02793 phi X174 lysis protein; Provisional
Probab=69.06 E-value=25 Score=21.77 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhh
Q psy7110 31 NEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (86)
Q Consensus 31 ND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~ 80 (86)
.++++..|..+|+.+-..-..+.+.|-.|.. .|+.|...+.....+|+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~-~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEM-EMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 3457899999999999999999999999999 899988888777666654
No 19
>KOG2678|consensus
Probab=68.77 E-value=18 Score=27.73 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 32 D~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
+++.++|..-++.||..+.+-++=+++.|+ .|..+.-..|.....|+-...|+
T Consensus 154 eeLaesll~LArslKtnalAfqsalkeDnQ-vl~~~~k~~D~N~~~L~~~Serv 206 (244)
T KOG2678|consen 154 EELAESLLKLARSLKTNALAFQSALKEDNQ-VLGAAEKGIDVNSQGLMDVSERV 206 (244)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhHH-HHHHHHHHHhHHHHHHHhhhHHH
Confidence 346788999999999999999999999999 99999999988888887665553
No 20
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=66.60 E-value=29 Score=27.26 Aligned_cols=56 Identities=25% Similarity=0.317 Sum_probs=49.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhcc
Q psy7110 28 HQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMAR 84 (86)
Q Consensus 28 e~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~R 84 (86)
-.+-++.+..|..-|--|-.|..+++.=|.+|-. +.|.++.-++.|..-++++.+-
T Consensus 190 ~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~-lVdrID~Ni~~t~~n~k~A~kE 245 (283)
T COG5325 190 ITERDEEIKNLARGIYELNEIFRDLGSLVGEQGE-LVDRIDFNIENTSDNLKNANKE 245 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHhhhhhhhhHHHHhhHHH
Confidence 3444778999999999999999999999999999 9999999999999888887653
No 21
>PRK04406 hypothetical protein; Provisional
Probab=65.77 E-value=30 Score=21.62 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhh
Q psy7110 31 NEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (86)
Q Consensus 31 ND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~ 80 (86)
.++++..|..+|..+-..-..+.+.|-.|.+ -|+.|...+.....+|+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~-~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQL-LITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999999 999999888877766654
No 22
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=65.24 E-value=28 Score=21.04 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy7110 31 NEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDD 69 (86)
Q Consensus 31 ND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~ 69 (86)
....+++|+..|..++.=.....+|+..-|. =||++..
T Consensus 15 L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~-RlDN~a~ 52 (56)
T PF04728_consen 15 LNSKVDQLSSDVNALRADVQAAKEEAARANQ-RLDNIAQ 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHh
Confidence 3445778888888888888888889999998 8887754
No 23
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=64.25 E-value=21 Score=29.11 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 32 EQLTSDLRNKIQALKS-LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 32 D~~l~~L~~kV~~LK~-ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
.+.++.|+.+|++.-+ |-+.|.=+++.||+.||..|+.-- +.+-+|..|
T Consensus 311 ~~R~~~Ls~rv~Ra~~LLRTrVdv~le~QN~~LL~SM~rRa-~lQLrLQqt 360 (420)
T PF11902_consen 311 ERRQEDLSRRVARATDLLRTRVDVELEQQNQDLLASMDRRA-RLQLRLQQT 360 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4457899999988877 467899999999999999987542 344444444
No 24
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=64.19 E-value=33 Score=21.53 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=36.2
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchh
Q psy7110 26 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFL 78 (86)
Q Consensus 26 ~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L 78 (86)
.+.++.+++++.+..-++.++..+....++++..-...++.+.+.+..+...+
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~ 54 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQA 54 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777788888888888887777777777766556666555555444433
No 25
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=63.75 E-value=42 Score=22.59 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhh
Q psy7110 35 TSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLN 79 (86)
Q Consensus 35 l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~ 79 (86)
++.|..+|..+-.-=.....|++.|.. .|+.+...+.....+|.
T Consensus 55 I~kL~e~V~~QGEqIkel~~e~k~qgk-tL~~I~~~L~~inkRLD 98 (102)
T PF01519_consen 55 INKLTEKVDKQGEQIKELQVEQKAQGK-TLQLILKTLQSINKRLD 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 444555555544444444556667777 77777777777666664
No 26
>KOG0811|consensus
Probab=60.18 E-value=36 Score=26.28 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 32 D~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
++.+..|..-|.-|-+|..+++.=|.+|-. ++|++.+.++.|..-....
T Consensus 179 ~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~-~VDsIe~nve~a~~nveqg 227 (269)
T KOG0811|consen 179 EQAIEQLEADIIDVNEIFKDLGSLVHEQGE-LVDSIEANVENASVNVEQG 227 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHhHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999 9999999999887665543
No 27
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=56.01 E-value=37 Score=21.61 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHhHHHHhhcchhh
Q psy7110 32 EQLTSDLRNKIQALKSLTID---IGTEVKYQNEHLLRGMDDDFDRTGGFLN 79 (86)
Q Consensus 32 D~~l~~L~~kV~~LK~ls~~---Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~ 79 (86)
++.+++|...|..|+.-.-+ |..-++.|+. -|+.+...+..-...|.
T Consensus 17 d~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~-~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 17 DDKVDALQTQVDDLESNLPDVTELNKKLDAQSA-QLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Confidence 44577777777777775555 7777888998 89999888887766654
No 28
>PF14227 UBN2_2: gag-polypeptide of LTR copia-type
Probab=55.27 E-value=21 Score=22.80 Aligned_cols=48 Identities=27% Similarity=0.268 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhh
Q psy7110 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (86)
Q Consensus 33 ~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm 82 (86)
..+..+..-+..|+.++..|.+|..- .- +|..|-.+|+.....|..+.
T Consensus 43 ~hi~~~~~l~~~L~~~g~~i~d~~~~-~~-lL~sLP~sy~~~~~~l~~~~ 90 (119)
T PF14227_consen 43 DHINEFRSLVNQLKSLGVPIDDEDKV-II-LLSSLPPSYDSFVTALLYSK 90 (119)
T ss_pred HHHHHHHHHHHhhccccccchHHHHH-HH-HHHcCCHhHHHHHHHHHccC
Confidence 46889999999999999999999653 44 79999999999887765543
No 29
>cd00513 Ribosomal_L32_L32e Ribosomal_L32_L32e: L32 is a protein from the large subunit that contains a surface-exposed globular domain and a finger-like projection that extends into the RNA core to stabilize the tertiary structure. L32 does not appear to play a role in forming the A (aminacyl), P (peptidyl) or E (exit) sites of the ribosome, but does interact with 23S rRNA, which has a "kink-turn" secondary structure motif. L32 is overexpressed in human prostate cancer and has been identified as a stably expressed housekeeping gene in macrophages of human chronic obstructive pulmonary disease (COPD) patients. In Schizosaccharomyces pombe, L32 has also been suggested to play a role as a transcriptional regulator in the nucleus. Found in archaea and eukaryotes, this protein is known as L32 in eukaryotes and L32e in archaea.
Probab=52.41 E-value=8.8 Score=25.97 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=13.4
Q ss_pred CchhhhhhccCCCCCC
Q psy7110 1 MDNRMRRQHAGNYYEP 16 (86)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (86)
||||+||.+-|.+--|
T Consensus 24 iDnkvRrr~kg~~~mp 39 (107)
T cd00513 24 IDNKVRRRFKGKPAMP 39 (107)
T ss_pred cccchhccccCCCCCC
Confidence 7999999998876655
No 30
>KOG0878|consensus
Probab=51.85 E-value=12 Score=25.96 Aligned_cols=16 Identities=44% Similarity=0.831 Sum_probs=12.4
Q ss_pred CchhhhhhccCCCCCC
Q psy7110 1 MDNRMRRQHAGNYYEP 16 (86)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (86)
||||.||.+-|.---|
T Consensus 40 iDnrVrRRFkgqilMP 55 (124)
T KOG0878|consen 40 IDNRVRRRFKGQILMP 55 (124)
T ss_pred chhHHHHHhccceecc
Confidence 7999999988764444
No 31
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.50 E-value=61 Score=20.58 Aligned_cols=51 Identities=10% Similarity=0.091 Sum_probs=42.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhh
Q psy7110 29 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (86)
Q Consensus 29 ~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~ 80 (86)
.+.++++.+|..+|+.+-..=..+++-|-+|-. .++.+...+...-.+++.
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~-~i~k~q~qlr~L~~kl~~ 54 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQL-VIDKLQAQLRLLTEKLKD 54 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 355778999999999999999999999999999 888888888777766654
No 32
>KOG1666|consensus
Probab=49.57 E-value=90 Score=23.69 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=43.0
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 24 GDAIHQENEQLTSDLRNKIQALKS--------LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 24 ~~~le~QND~~l~~L~~kV~~LK~--------ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
.+.+|+|--.+..+|.+|+.++-. +-..|..-+++=|. +|+.|+-.+-..-..+++.
T Consensus 5 fe~yEqqy~~l~a~it~k~~~~~~~~~~ekk~~l~~i~~~leEa~e-ll~qMdlEvr~lp~~~Rs~ 69 (220)
T KOG1666|consen 5 FEGYEQQYRELSAEITKKIGRALSLPGSEKKQLLSEIDSKLEEANE-LLDQMDLEVRELPPNFRSS 69 (220)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHhHHHHHH-HHHHHHHHHHhCCchhhhH
Confidence 466788888888999999988744 45677778888899 9999988776655544443
No 33
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=49.01 E-value=91 Score=25.38 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=48.4
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhh
Q psy7110 24 GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (86)
Q Consensus 24 ~~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~ 80 (86)
|..||+|.++.++.-..-|..||+==-.|.+=+.+|...=.-++.+.|+..+++|..
T Consensus 260 ~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisk 316 (395)
T PF10267_consen 260 YERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISK 316 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 477899999998888899999999888889989988876788888888888887753
No 34
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=47.73 E-value=87 Score=21.57 Aligned_cols=46 Identities=13% Similarity=0.261 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 35 TSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 35 l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
++.+..+|..|..-......||.+=+. =+..+..+++.+...|..+
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~-K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQK-KNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555444 4555555555555555443
No 35
>PTZ00159 60S ribosomal protein L32; Provisional
Probab=47.20 E-value=11 Score=26.36 Aligned_cols=16 Identities=44% Similarity=0.804 Sum_probs=13.4
Q ss_pred CchhhhhhccCCCCCC
Q psy7110 1 MDNRMRRQHAGNYYEP 16 (86)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (86)
||||+||.+-|.+--|
T Consensus 39 iDnkvRrr~kG~~~mp 54 (133)
T PTZ00159 39 IDNRVRRRFKGTRLMP 54 (133)
T ss_pred cccchhccccCccCCC
Confidence 7999999998877655
No 36
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=46.64 E-value=80 Score=20.54 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy7110 32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMD 68 (86)
Q Consensus 32 D~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~ 68 (86)
...++++...|..+|.=+..-.+|+..=|+ =||+++
T Consensus 37 ~~kvdql~~dv~~a~aaa~aAk~EA~RAN~-RiDN~~ 72 (85)
T PRK09973 37 NAKIARLEQDMKALRPQIYAAKSEANRANT-RLDAQD 72 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHH
Confidence 334667777777777778888888888888 888874
No 37
>KOG2991|consensus
Probab=45.90 E-value=1.2e+02 Score=24.17 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=39.4
Q ss_pred chHHHhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcch
Q psy7110 25 DAIHQENEQL--------TSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGF 77 (86)
Q Consensus 25 ~~le~QND~~--------l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~ 77 (86)
..|.++|+++ |-.|..++...|.-+..+..--++=+. ++..|++++++....
T Consensus 220 R~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~d-fm~eLdedVEgmqsT 279 (330)
T KOG2991|consen 220 RTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYD-FMEELDEDVEGMQST 279 (330)
T ss_pred HHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHH-HHHHHHHHHhcchhh
Confidence 7788888764 556777888888888777766666677 788888898887653
No 38
>PRK01371 sec-independent translocase; Provisional
Probab=44.76 E-value=94 Score=21.82 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhHhHHHHhhcchhh
Q psy7110 33 QLTSDLRNKIQALKSLTIDIGTEVKYQN-------------------EHLLRGMDDDFDRTGGFLN 79 (86)
Q Consensus 33 ~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN-------------------~~lLd~l~~~fd~t~~~L~ 79 (86)
+.+..|+.-|..+|..+....+++++.- +||+++++.+++.....++
T Consensus 27 ~~ar~lg~~ir~~R~~~~~ak~~i~~Elg~ef~d~d~r~l~Pr~~vrk~l~d~~~~~~~~~~~~~~ 92 (137)
T PRK01371 27 KAARDAGRTLRQLREMANNARNDLRSELGPEFADLDLRDLNPKTFVRKHLLEDLDDDIDEIKLGLK 92 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccchhhcCHHHHHHHHHhhcchhhhhhhhhhHH
Confidence 4566788888888886655555555432 3488888887776655544
No 39
>PRK08562 rpl32e 50S ribosomal protein L32e; Validated
Probab=44.14 E-value=14 Score=25.66 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.0
Q ss_pred CchhhhhhccCCCCCC
Q psy7110 1 MDNRMRRQHAGNYYEP 16 (86)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (86)
||||+||.+-|.+--|
T Consensus 41 iDnkvRrr~kg~~~mp 56 (125)
T PRK08562 41 LDSKMRLKLKGKPAIV 56 (125)
T ss_pred cccchhccccCCCCCC
Confidence 7999999988776554
No 40
>PF08518 GIT_SHD: Spa2 homology domain (SHD) of GIT; InterPro: IPR013724 GIT proteins are signalling integrators with GTPase-activating function which may be involved in the organisation of the cytoskeletal matrix assembled at active zones (CAZ). The function of the CAZ might be to define sites of neurotransmitter release. Mutations in the Spa2 homology domain (SHD) domain of GIT1 described here interfere with the association of GIT1 with Piccolo, beta-PIX, and focal adhesion kinase [].
Probab=43.27 E-value=31 Score=18.47 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7110 43 QALKSLTIDIGTEVKY 58 (86)
Q Consensus 43 ~~LK~ls~~Ig~Ev~~ 58 (86)
.++..|++||.+|++.
T Consensus 11 ~~F~eL~~DV~~E~~R 26 (31)
T PF08518_consen 11 QRFEELATDVYDELDR 26 (31)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678899999999975
No 41
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=41.68 E-value=98 Score=20.13 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhh
Q psy7110 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (86)
Q Consensus 34 ~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~ 80 (86)
.+++|++.|+.|+.=...+..+|..-.. -.+.--++-.++-.+|.+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~a-aa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRP-QIYAAKSEANRANTRLDA 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhh
Confidence 4788899999998888888888887777 666666666666655543
No 42
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=38.69 E-value=18 Score=27.51 Aligned_cols=16 Identities=19% Similarity=-0.006 Sum_probs=13.5
Q ss_pred CchhhhhhccCCCCCC
Q psy7110 1 MDNRMRRQHAGNYYEP 16 (86)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (86)
||||+||.+-|.+--|
T Consensus 140 idnk~Rr~~kg~~~mp 155 (232)
T PRK12766 140 GLSKQRRGIKGKGDTV 155 (232)
T ss_pred CccchhcccCCCCCCC
Confidence 7999999998877655
No 43
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=38.57 E-value=23 Score=25.64 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 43 QALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 43 ~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
.-|+.+...|..||+.=|. -|.++...|......|++..+|.
T Consensus 104 eel~~~~e~i~~~v~~Gn~-Sl~~lsr~l~~sp~firglAKRs 145 (160)
T PF09824_consen 104 EELRDYVEKIEKEVEAGNT-SLSDLSRKLGISPVFIRGLAKRS 145 (160)
T ss_pred HHHHHHHHHHHHHHHcCCC-cHHHHHHHhCCCHHHHHHHHHhc
Confidence 4688899999999999999 99999999999999999998885
No 44
>PRK04654 sec-independent translocase; Provisional
Probab=38.52 E-value=1.1e+02 Score=23.21 Aligned_cols=35 Identities=6% Similarity=-0.067 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHH
Q psy7110 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDD 70 (86)
Q Consensus 34 ~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~ 70 (86)
....|+.-|..+|.....+.+|+...-. +++|...
T Consensus 28 ~aRtlGk~irk~R~~~~~vk~El~~El~--~~ELrk~ 62 (214)
T PRK04654 28 AARFAGLWVRRARMQWDSVKQELERELE--AEELKRS 62 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHH
Confidence 4456666777777777776666655544 3444443
No 45
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=38.43 E-value=88 Score=18.66 Aligned_cols=41 Identities=24% Similarity=0.474 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhHhHHHHhhc
Q psy7110 34 LTSDLRNKIQALKSLT--------IDIGTEVKYQNEHLLRGMDDDFDRTG 75 (86)
Q Consensus 34 ~l~~L~~kV~~LK~ls--------~~Ig~Ev~~QN~~lLd~l~~~fd~t~ 75 (86)
.++.+..++..++..+ ..|...+++=.. +|+.|+-.+-.+-
T Consensus 4 l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~-~l~qMe~E~~~~p 52 (79)
T PF05008_consen 4 LTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEE-LLKQMELEVRSLP 52 (79)
T ss_dssp HHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCC
Confidence 3455555665555432 456666666666 6777766555443
No 46
>PF01655 Ribosomal_L32e: Ribosomal protein L32; InterPro: IPR001515 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The L32e family consists of proteins that have 135 to 240 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3O58_b 3IZS_h 1S1I 3O5H_b 2ZKR_y 1Q7Y_Z 1VQ7_Y 3CCQ_Y 3CCV_Y 3CC7_Y ....
Probab=38.09 E-value=13 Score=25.11 Aligned_cols=16 Identities=38% Similarity=0.742 Sum_probs=9.2
Q ss_pred CchhhhhhccCCCCCC
Q psy7110 1 MDNRMRRQHAGNYYEP 16 (86)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (86)
||||+||.+-|.+--|
T Consensus 26 iDnk~Rrr~kG~~~mp 41 (110)
T PF01655_consen 26 IDNKVRRRFKGKPLMP 41 (110)
T ss_dssp SS-TCCHT-TTS---S
T ss_pred ccCcceeeecCccCcc
Confidence 7999999988765444
No 47
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=37.67 E-value=68 Score=22.84 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=34.5
Q ss_pred chHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhh
Q psy7110 25 DAIHQENE-----QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLN 79 (86)
Q Consensus 25 ~~le~QND-----~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~ 79 (86)
+.++||-| ...+.|..+..+|+.++..+ ||. |+++....++.++.+.
T Consensus 39 deldEEfD~~ps~~~~~~lr~Rydrlr~va~rv------Q~v--lgd~At~gERl~alls 90 (156)
T PF08372_consen 39 DELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRV------QNV--LGDVATQGERLQALLS 90 (156)
T ss_pred chhhhhhcccccccccHHHHHHHHHHHHHHHHH------HHH--HHHHHHHHHHHHHhhc
Confidence 55555544 24567888999999999876 555 8888888888877664
No 48
>KOG0809|consensus
Probab=37.05 E-value=94 Score=24.68 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhc
Q psy7110 32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMA 83 (86)
Q Consensus 32 D~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~ 83 (86)
++.+-+|...|.-|-+|..+++.=|-+|-. ++|.++--++.+...+..+.+
T Consensus 217 E~EV~ql~~sI~dL~~if~DL~~lVvdQGt-vvDRIDyNvEqt~~~v~~a~k 267 (305)
T KOG0809|consen 217 EKEVTQLVESIYDLNQIFKDLSALVVDQGT-VVDRIDYNVEQTQVRVEDALK 267 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhheecchhhhhhhHHhHHH
Confidence 556888999999999999999999999999 999999999999988887765
No 49
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.80 E-value=1.7e+02 Score=21.50 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=21.2
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFD 72 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd 72 (86)
..+|.|..+.-+.|.+.-...++....+.+++...+. .+.+|...-.
T Consensus 96 p~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~L~~~n~ 142 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDS-VINGLKEENQ 142 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3445554444344444444444555555554444444 4444433333
No 50
>KOG3251|consensus
Probab=35.41 E-value=1.9e+02 Score=21.76 Aligned_cols=69 Identities=16% Similarity=0.017 Sum_probs=49.9
Q ss_pred ccCCCCCCCCCCCCC-cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhh
Q psy7110 9 HAGNYYEPVPNQFDG-GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLN 79 (86)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~ 79 (86)
-++.+|.+++...+. |+..-+.||. +..=.+.|.-+=..+.+|=+-+.+||. .|.....-|-...+.|+
T Consensus 105 lL~~~~~~~~~~~~~~~D~el~~~d~-l~~s~~~lDd~l~~G~~ile~l~~Q~~-~L~~~~~ki~~~~ntLG 174 (213)
T KOG3251|consen 105 LLDRRFTNGATGTSIPFDEELQENDS-LKRSHNMLDDLLESGSAILENLVEQRL-TLKGTQKKILDILNTLG 174 (213)
T ss_pred HhcCCCCCCCccCCCcchHHHHhhhH-HHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence 356677775554444 5555555554 566777777777889999999999999 99888887777666554
No 51
>PRK01919 tatB sec-independent translocase; Provisional
Probab=35.30 E-value=1.8e+02 Score=21.24 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 36 SDLRNKIQALKSLTIDIGTEVKYQ 59 (86)
Q Consensus 36 ~~L~~kV~~LK~ls~~Ig~Ev~~Q 59 (86)
..++.-|..+|....++.+|++.+
T Consensus 30 RtlGk~i~k~Rr~~~d~K~ev~~E 53 (169)
T PRK01919 30 RTAGALFGRAQRYINDVKAEVSRE 53 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555544444444
No 52
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=33.83 E-value=98 Score=17.86 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhh
Q psy7110 41 KIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRT 74 (86)
Q Consensus 41 kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t 74 (86)
++.-||++--.+..|+++-.. -|-+++.+.|.-
T Consensus 5 ~ieelkqll~rle~eirett~-sl~ninksidq~ 37 (46)
T PF08181_consen 5 KIEELKQLLWRLENEIRETTD-SLRNINKSIDQY 37 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHH
Confidence 566788888899999999888 788877776653
No 53
>COG4949 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=33.75 E-value=1.1e+02 Score=24.99 Aligned_cols=50 Identities=26% Similarity=0.309 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhh
Q psy7110 32 EQLTSDLRNKIQALKS-LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (86)
Q Consensus 32 D~~l~~L~~kV~~LK~-ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm 82 (86)
|+....|+.|+.+--. +-.-|+=|++.||+.+|..|+... ..+.+|..|.
T Consensus 311 eeRqanLSrklaRat~LlRtwidve~erQN~~lL~~Md~ra-~lQlrLQqtV 361 (424)
T COG4949 311 EERQANLSRKLARATALLRTWIDVELERQNQELLNSMDARA-QLQLRLQQTV 361 (424)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhhHHH-HHHHHHHHHh
Confidence 4556788888877654 456799999999998888887543 3455555554
No 54
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=33.50 E-value=1.2e+02 Score=19.92 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 32 EQLTSDLRNKIQALKSLTIDIGTEVK 57 (86)
Q Consensus 32 D~~l~~L~~kV~~LK~ls~~Ig~Ev~ 57 (86)
...|..|...|..|..+-..++....
T Consensus 12 ~~~i~~i~~~v~~l~~l~~~~~t~~~ 37 (151)
T cd00179 12 RGNIDKISEDVEELQKLHSQLLTAPD 37 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33456666666666666666665544
No 55
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=33.44 E-value=1.5e+02 Score=23.29 Aligned_cols=46 Identities=17% Similarity=0.363 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhc
Q psy7110 37 DLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMA 83 (86)
Q Consensus 37 ~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~ 83 (86)
.....+..|...-.+|..+++.-+. +|..+...|..-...+...++
T Consensus 333 ~~~~~l~~le~~q~~l~~~l~~~~~-~L~~ve~~~~~N~~~i~~n~~ 378 (388)
T PF04912_consen 333 EFSQTLSELESQQSDLQSQLKKWEE-LLNKVEEKFKENMETIEKNVK 378 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555667777777777 777777777776666666554
No 56
>PRK01770 sec-independent translocase; Provisional
Probab=33.15 E-value=1.8e+02 Score=21.07 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHh
Q psy7110 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDR 73 (86)
Q Consensus 33 ~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~ 73 (86)
..+..|+.-|..+|.++..+.+|+...-. +++|...+..
T Consensus 27 ~~~r~lg~~i~~~R~~~~~~k~e~~~E~~--~~El~~~l~~ 65 (171)
T PRK01770 27 VAVKTVAGWIRALRSLATTVQNELTQELK--LQELQDSLKK 65 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHH
Confidence 34667888888888888888888887766 5665544433
No 57
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=32.72 E-value=57 Score=22.95 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=18.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q psy7110 28 HQENEQLTSDLRNKIQALKSLT 49 (86)
Q Consensus 28 e~QND~~l~~L~~kV~~LK~ls 49 (86)
..+.|.+|+.|..|+..||.|=
T Consensus 108 r~~ID~eIe~Lq~Ki~~LKeiR 129 (145)
T PF12548_consen 108 RLHIDHEIETLQDKIKNLKEIR 129 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999863
No 58
>COG1717 RPL32 Ribosomal protein L32E [Translation, ribosomal structure and biogenesis]
Probab=32.46 E-value=95 Score=21.87 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=12.6
Q ss_pred CchhhhhhccCCCCCC
Q psy7110 1 MDNRMRRQHAGNYYEP 16 (86)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (86)
+|++|||..-|.|-.|
T Consensus 46 ~dsK~Rr~~kg~p~~v 61 (133)
T COG1717 46 IDSKMRRKLKGKPPMV 61 (133)
T ss_pred chHHHHHHhcCCCCCc
Confidence 6899999988776544
No 59
>PF07097 DUF1359: Protein of unknown function (DUF1359); InterPro: IPR010772 This family consists of several hypothetical bacterial and phage proteins of around 100 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this species. The function of this family is unknown.
Probab=32.31 E-value=1.6e+02 Score=19.72 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy7110 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMD 68 (86)
Q Consensus 33 ~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~ 68 (86)
+.++-...|+.|||.+-.+|.+..+.--- ++|++.
T Consensus 9 ~~I~~~q~K~~RLk~~IH~vr~Q~~~~~i-~~D~~k 43 (102)
T PF07097_consen 9 EQIAKIQTKICRLKNVIHAVRRQTELVKI-VLDDLK 43 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHh
Confidence 45788899999999998776655444344 555543
No 60
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=32.30 E-value=1.3e+02 Score=18.63 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=4.7
Q ss_pred HHhhHhHHHHh
Q psy7110 63 LLRGMDDDFDR 73 (86)
Q Consensus 63 lLd~l~~~fd~ 73 (86)
||+.++.....
T Consensus 62 ll~~l~~~~~~ 72 (127)
T smart00502 62 LLEDLEEQKEN 72 (127)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 61
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.28 E-value=1.8e+02 Score=20.53 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcch
Q psy7110 32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGF 77 (86)
Q Consensus 32 D~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~ 77 (86)
...+..|...+..|+.--.+...|++..+. .+..+.+.+....-.
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k-~~e~l~DE~~~L~l~ 159 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNK-ANEILQDELQALQLQ 159 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 556788888888888888899999999999 999999888765543
No 62
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=31.15 E-value=1.5e+02 Score=23.21 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 34 ~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
.+.-|...|.-|-+|..+|..+|-+|.. +.|-++..+..++.-+...
T Consensus 186 ~ikkiEkt~ael~qLfndm~~~V~eq~e-~Vd~I~~~~~~~~~n~~~g 232 (280)
T COG5074 186 EIKKIEKTMAELTQLFNDMEELVIEQQE-NVDVIDKNVEDAQENVEQG 232 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHhhHhhHHhhHHHh
Confidence 4677888999999999999999999999 9999998888777655443
No 63
>PRK10604 sensor protein RstB; Provisional
Probab=31.08 E-value=1.6e+02 Score=22.72 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=33.5
Q ss_pred hhhccCCCCCCCCCCCCCc-chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 6 RRQHAGNYYEPVPNQFDGG-DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKY 58 (86)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~ 58 (86)
++-+.|+.-.+.+....+. ..+....++..+.+...+...|.+...|.+|++.
T Consensus 172 ~~~~~g~~~~~~~~~~~~el~~L~~~fn~m~~~l~~~~~~~~~l~~~vsHeLrt 225 (433)
T PRK10604 172 QRLGDGHLAERIHFDEGSSLERLGVAFNQMADNINALIASKKQLIDGIAHELRT 225 (433)
T ss_pred HHHhcCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcC
Confidence 3334455544444333233 5566666777777888888888888888887763
No 64
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=31.05 E-value=1.2e+02 Score=18.20 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhh
Q psy7110 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (86)
Q Consensus 34 ~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~ 80 (86)
.++.|++.|+.|+.=--.|..||..-.. -+-..-++-.++-.+|.+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~-~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRA-DVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 3677777777777666666666665555 444555555565555544
No 65
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=30.84 E-value=1.2e+02 Score=18.78 Aligned_cols=24 Identities=8% Similarity=0.241 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 34 LTSDLRNKIQALKSLTIDIGTEVK 57 (86)
Q Consensus 34 ~l~~L~~kV~~LK~ls~~Ig~Ev~ 57 (86)
.+++|...|..|+..+..+--++-
T Consensus 3 d~~eLk~evkKL~~~A~~~kmdLH 26 (66)
T PF05082_consen 3 DIEELKKEVKKLNRKATQAKMDLH 26 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999888776654
No 66
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=30.75 E-value=35 Score=24.59 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=14.7
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNE 61 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~ 61 (86)
..||++.|+ -+.|.-.|+|||.=.-|+..|+.-|.+
T Consensus 17 alLE~ELdE-KE~L~~~~QRLkDE~RDLKqEl~V~ek 52 (166)
T PF04880_consen 17 ALLESELDE-KENLREEVQRLKDELRDLKQELIVQEK 52 (166)
T ss_dssp HHHHHHHHH-HHHHHHCH-------------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999988 489999999999999999999855554
No 67
>KOG0860|consensus
Probab=30.42 E-value=1.8e+02 Score=19.93 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=43.3
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhh
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm 82 (86)
+.+++|-|+-++-|...|...=+=...+ +|+++-.+ -|......|.++..+|++-|
T Consensus 32 ~~tq~QvdeVv~IMr~NV~KVlER~ekL-~~L~drad-~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 32 QQTQAQVDEVVDIMRENVEKVLERGEKL-DELDDRAD-QLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcchH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888887776666665 46666666 78889999999999988754
No 68
>PRK15396 murein lipoprotein; Provisional
Probab=30.37 E-value=1.5e+02 Score=18.85 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy7110 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDD 69 (86)
Q Consensus 34 ~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~ 69 (86)
.+++|...|..++.=.....+|...=|+ =||++-.
T Consensus 40 kvdql~~dv~~~~~~~~~a~~eA~raN~-RlDn~~~ 74 (78)
T PRK15396 40 KVDQLSNDVNAMRSDVQAAKDDAARANQ-RLDNQAT 74 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3455555555555566666668888888 7877644
No 69
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=30.33 E-value=1.9e+02 Score=20.10 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=47.7
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
+.++.+.+.-++....-|..+..-...|..|++.-.. .-..+.+..++...-|..+|...
T Consensus 32 e~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~-rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 32 ESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQE-RKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 3355566667778888888888888999999999888 88888888888888888877653
No 70
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=30.03 E-value=45 Score=23.84 Aligned_cols=48 Identities=21% Similarity=0.438 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhh
Q psy7110 32 EQLTSDLRNKIQALK--------------SLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (86)
Q Consensus 32 D~~l~~L~~kV~~LK--------------~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~ 80 (86)
.+++.+++.|+..+. +++..|-.=+.+||. +|.+....++.....|+.
T Consensus 44 q~lln~is~kldging~l~dliaqgnln~el~ke~lkianeqn~-~ln~vn~~l~~in~~l~~ 105 (177)
T PF12495_consen 44 QQLLNQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQ-MLNNVNNQLNSINSMLNT 105 (177)
T ss_pred HHHHHHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 356677776654332 245555555688999 999999988877665554
No 71
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.89 E-value=2.1e+02 Score=24.09 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=19.2
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKY 58 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~ 58 (86)
+.+++||+.+..+-..--.+...+...|...|..
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~ 109 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQQIQQAVQS 109 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 4566666666555554444455566666655543
No 72
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=29.47 E-value=1.5e+02 Score=19.79 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=26.6
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 24 GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVK 57 (86)
Q Consensus 24 ~~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~ 57 (86)
|-.+.++..+.-+.|..+-..||..+..+..+|.
T Consensus 62 Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~ 95 (97)
T PF15136_consen 62 YVAMNERLQQARDQLKKKCEELRQAGEELERDIE 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777778888888888888888887775
No 73
>PRK10132 hypothetical protein; Provisional
Probab=27.51 E-value=1.9e+02 Score=19.22 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=20.6
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIG 53 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig 53 (86)
..++.|.+++.++|..-+..+..|--.-+
T Consensus 8 ~~~~~q~e~L~~Dl~~L~~~le~ll~~~~ 36 (108)
T PRK10132 8 NDVDDGVQDIQNDVNQLADSLESVLKSWG 36 (108)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788888888888888888865544333
No 74
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.09 E-value=2.1e+02 Score=19.63 Aligned_cols=50 Identities=8% Similarity=0.163 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 35 TSDLRNKIQALKSLTIDIGT---EVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 35 l~~L~~kV~~LK~ls~~Ig~---Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
|+.+...+..+|.....-.. .++.=+. =+..|...++.+...|+-|..+|
T Consensus 51 ld~~~~~l~~~k~~lee~~~~~~~~E~l~r-riq~LEeele~ae~~L~e~~ekl 103 (143)
T PF12718_consen 51 LDKLEEQLKEAKEKLEESEKRKSNAEQLNR-RIQLLEEELEEAEKKLKETTEKL 103 (143)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554433322 2333444 56777778888887777776554
No 75
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=27.06 E-value=2.3e+02 Score=20.04 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHh
Q psy7110 36 SDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDR 73 (86)
Q Consensus 36 ~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~ 73 (86)
+.+...+..|+.-...+.+++..--. .|..+.+.+..
T Consensus 106 ~~~~~~i~~L~~~i~~~q~~~~~~i~-~L~~f~~~l~~ 142 (184)
T PF05791_consen 106 EDLKEIIEDLQDQIQKNQDKVQALIN-ELNDFKDKLQK 142 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 44444555555545555555554444 44444444333
No 76
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=26.27 E-value=3.4e+02 Score=21.70 Aligned_cols=54 Identities=9% Similarity=0.166 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 31 NEQLTSDLRNKIQALKS-LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 31 ND~~l~~L~~kV~~LK~-ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
..-+...|...+..|.. +-......-+.-.. .+..+-.+++.+.++|..+|.+|
T Consensus 42 ~~fl~~~l~~Q~~~L~~~~~~~~~~~~~~~~~-~f~~l~~~ld~~~~~L~~~l~~L 96 (412)
T PF04108_consen 42 TGFLRRGLKQQLKLLYKKVRSSLLIVYEWGQR-DFKDLVKELDPADARLEQTLDML 96 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444 22222222223333 46667777777777787777654
No 77
>PRK00404 tatB sec-independent translocase; Provisional
Probab=26.25 E-value=2.4e+02 Score=19.92 Aligned_cols=39 Identities=15% Similarity=0.020 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHh
Q psy7110 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDR 73 (86)
Q Consensus 33 ~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~ 73 (86)
+.+..|+.-|.++|.....+.+|+...-. ++++...++.
T Consensus 27 ~laR~lG~~i~~~rr~~~~~k~ei~~E~~--~~elr~~l~~ 65 (141)
T PRK00404 27 GAARTAGLWIGRLKRSFNAIKQEVEREIG--ADEIRRQLHN 65 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC--HHHHHHHHHH
Confidence 34567777888888888888888888777 5777666654
No 78
>PRK04098 sec-independent translocase; Provisional
Probab=25.88 E-value=2.6e+02 Score=20.12 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHH
Q psy7110 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDD 70 (86)
Q Consensus 34 ~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~ 70 (86)
.+..++.-|..+|....+..++++..-. ++++...
T Consensus 28 ~~r~lGk~ir~~K~~~~~~k~~l~~Ei~--~~elk~e 62 (158)
T PRK04098 28 AMVDIAKFFKAVKKTINDAKSTLDKEIN--IEEIKEE 62 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence 3455666666666666666555555544 3444433
No 79
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=25.62 E-value=1.2e+02 Score=22.15 Aligned_cols=50 Identities=10% Similarity=0.183 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 35 TSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 35 l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
+..+..++.....-......||..-+. =|..|.+.++++..+|..+..||
T Consensus 17 ~~~~~~~l~~~~~~~~~aE~e~~~l~r-ri~~lE~~le~~eerL~~~~~kL 66 (237)
T PF00261_consen 17 LEEAEEKLKEAEKRAEKAEAEVASLQR-RIQLLEEELERAEERLEEATEKL 66 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHH
Confidence 455666666666677888899999998 89999999999999988877664
No 80
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=24.99 E-value=2.3e+02 Score=22.24 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 37 DLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 37 ~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
-|...|..+-.++..||.+|.+|-. ++. ..|+.-+..|..+
T Consensus 52 ~i~~~l~~f~~~S~~igg~V~~~a~-~v~---~aF~~qr~~L~~a 92 (312)
T PF01213_consen 52 LINGPLKPFVELSKKIGGDVAEQAQ-LVK---KAFQAQRKFLLVA 92 (312)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHH-HHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH-HHH---HHHHHHHHHHHHH
Confidence 4688999999999999999999998 554 4566666555443
No 81
>PF12302 DUF3629: Protein of unknown function (DUF3629); InterPro: IPR022079 This family of proteins is found in eukaryotes. Proteins in this family are typically between 256 and 292 amino acids in length.
Probab=24.98 E-value=2.3e+02 Score=21.55 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHh
Q psy7110 51 DIGTEVKYQNEHLLRGMDDDFDR 73 (86)
Q Consensus 51 ~Ig~Ev~~QN~~lLd~l~~~fd~ 73 (86)
.|.+--+-||+ |++-|.+.|..
T Consensus 95 rieERRkiqnK-Mr~LMeeQ~~~ 116 (253)
T PF12302_consen 95 RIEERRKIQNK-MRALMEEQHEK 116 (253)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHH
Confidence 46777888999 99999888754
No 82
>PF07326 DUF1466: Protein of unknown function (DUF1466); InterPro: IPR009932 This family consists of several hypothetical mammalian proteins of around 240 residues in length.
Probab=24.76 E-value=83 Score=24.06 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=29.5
Q ss_pred cCCCCCC-CCCCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 10 AGNYYEP-VPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEV 56 (86)
Q Consensus 10 ~~~~~~~-~~~~~~~~~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev 56 (86)
+-+||.+ .|-.+ .+|-|..|+-.+.=|..||+|+....+-|
T Consensus 183 lrSPYSS~~plc~------~~e~D~DLE~V~aGI~~Lk~LSq~~DdaI 224 (233)
T PF07326_consen 183 LRSPYSSPEPLCS------PSEFDSDLEPVSAGIQQLKHLSQEFDDAI 224 (233)
T ss_pred hcCCcCCCCcccC------ccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 4577766 23222 24567779999999999999998876654
No 83
>KOG1853|consensus
Probab=24.75 E-value=1.5e+02 Score=23.59 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=28.9
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNE 61 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~ 61 (86)
..||++.|+. +.|...|.+||.=+.++..|+--+.+
T Consensus 150 AfLESELdEk-e~llesvqRLkdEardlrqelavr~k 185 (333)
T KOG1853|consen 150 AFLESELDEK-EVLLESVQRLKDEARDLRQELAVRTK 185 (333)
T ss_pred HHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577888874 78889999999999999998866553
No 84
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.27 E-value=2.9e+02 Score=20.25 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=15.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 27 IHQENEQLTSDLRNKIQALKSLTIDIGTEV 56 (86)
Q Consensus 27 le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev 56 (86)
+.++.++...+|..++...++...++..|-
T Consensus 112 ~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n 141 (206)
T PRK10884 112 IDNTWNQRTAEMQQKVAQSDSVINGLKEEN 141 (206)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666555555544443333
No 85
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=23.89 E-value=1.9e+02 Score=17.93 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh----HHHHhhcchhhhhhc
Q psy7110 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMD----DDFDRTGGFLNNSMA 83 (86)
Q Consensus 34 ~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~----~~fd~t~~~L~~tm~ 83 (86)
....+...+...+++..+|..-++.+=+..|..|+ ++||-....|..|=.
T Consensus 11 ~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~ 64 (79)
T PF04380_consen 11 LAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTRE 64 (79)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHH
Confidence 33444445555555666666555555544555554 566666666555543
No 86
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=23.11 E-value=2e+02 Score=17.86 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 32 EQLTSDLRNKIQALKSLTIDIGTEV 56 (86)
Q Consensus 32 D~~l~~L~~kV~~LK~ls~~Ig~Ev 56 (86)
...|..|...|..|+.+-..++...
T Consensus 14 ~~~I~~i~~~v~~l~~l~~~~l~~~ 38 (117)
T smart00503 14 RANIQKISQNVAELQKLHEELLTPP 38 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3446666666666666666665433
No 87
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=22.68 E-value=2e+02 Score=17.89 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhc
Q psy7110 48 LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMA 83 (86)
Q Consensus 48 ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~ 83 (86)
-+..=-+++.+|+. -|..+++.++...+.|+.+.+
T Consensus 23 ~s~~t~~~L~~Ss~-~L~~~~~e~~~~~~~l~~s~~ 57 (92)
T PF03908_consen 23 RSELTLQTLEESSA-TLRSTNDEYDGQSSLLKKSRK 57 (92)
T ss_pred HHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 44555677888888 899999999998888877654
No 88
>PF05069 Phage_tail_S: Phage virion morphogenesis family ; InterPro: IPR006522 This entry represents a number of known and suspected phage virion morphogenesis proteins. The S protein from phage P2 is thought to act in tail completion and stable head joining [].
Probab=21.35 E-value=2.5e+02 Score=18.76 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 30 ENEQLTSDLRNKIQALKSLTIDIGTEVKYQNE 61 (86)
Q Consensus 30 QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~ 61 (86)
+..+.|+.|.......+.|...|+..++.+..
T Consensus 5 ~l~~~L~~L~~~~~~~~~l~~~ig~~l~~~~~ 36 (148)
T PF05069_consen 5 QLQRALERLAAQPKDRRPLLRKIGEYLRKSTR 36 (148)
T ss_pred HHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence 33556777888888888899999988887655
No 89
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=21.13 E-value=4.5e+02 Score=21.75 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=38.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhh
Q psy7110 29 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (86)
Q Consensus 29 ~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm 82 (86)
.|....+..+..+|...+.-......++.++.. =+..+....-.+...+...-
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~-~i~~~~~ql~~s~~~l~~~~ 93 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLET-EIASLEAQLIETADDLKKLR 93 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHH
Confidence 345666778888888888888888888888887 77777777766666655443
No 90
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=20.63 E-value=2.8e+02 Score=18.65 Aligned_cols=48 Identities=13% Similarity=0.017 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 37 DLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 37 ~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
....+|..|-+.-..-|++|+.+.. =....+..|+.....|..-.+||
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~-e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQV-EQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666677788887777 77777777777776666655554
No 91
>KOG3650|consensus
Probab=20.54 E-value=2.9e+02 Score=18.86 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7110 35 TSDLRNKIQALKSLTIDIGTE 55 (86)
Q Consensus 35 l~~L~~kV~~LK~ls~~Ig~E 55 (86)
++.|+..|..+|.=...+..|
T Consensus 72 LdDLSqRVdsVKEEnLKLrSE 92 (120)
T KOG3650|consen 72 LDDLSQRVDSVKEENLKLRSE 92 (120)
T ss_pred HHHHHHHHHHHHHhhhhhhhh
Confidence 577777777777766665554
No 92
>COG5345 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.40 E-value=94 Score=24.99 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7110 38 LRNKIQALKSLTIDIGT 54 (86)
Q Consensus 38 L~~kV~~LK~ls~~Ig~ 54 (86)
+.+-|..++.|+.+||+
T Consensus 228 adnlvq~vdria~dign 244 (358)
T COG5345 228 ADNLVQFVDRIATDIGN 244 (358)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 34556777778888774
No 93
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=20.32 E-value=3.5e+02 Score=19.72 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhc
Q psy7110 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMA 83 (86)
Q Consensus 34 ~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~ 83 (86)
-++.|...+..|..++....+.+..-.. +|+.-...-+..+.+.+..+.
T Consensus 23 g~~~l~~~l~~l~~~~~~~~~~L~e~~~-~L~~E~~ed~~~r~~~g~~W~ 71 (296)
T PF13949_consen 23 GIEKLEESLQELPELSQEVRSILDEIEE-MLDEEEREDEQLRAKYGERWT 71 (296)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSTTTCG
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCc
Confidence 3678888888999999988888888888 888877777766666654443
No 94
>PRK10404 hypothetical protein; Provisional
Probab=20.17 E-value=2.7e+02 Score=18.24 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhh
Q psy7110 32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLN 79 (86)
Q Consensus 32 D~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~ 79 (86)
++..++|..-+..+..|--.-+++..++-.-+=+.+...++.++.+|.
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~ 55 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVS 55 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444444233444445555544443
Done!