Query psy7110
Match_columns 86
No_of_seqs 103 out of 353
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 18:26:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n7s_D SNAP-25A; neuronal snar 99.7 5E-17 1.7E-21 98.8 6.6 60 25-85 2-61 (66)
2 1gl2_D Syntaxin 8, vesicle tra 99.7 5.2E-17 1.8E-21 98.5 5.3 59 26-86 3-61 (65)
3 1sfc_D Protein (SNAP-25B), pro 99.7 2.1E-16 7.1E-21 101.1 7.1 60 25-85 21-80 (87)
4 2nps_D Syntaxin-6; vesicle fus 99.6 1.4E-16 5E-21 100.7 4.1 59 25-85 12-70 (82)
5 1l4a_D S-SNAP25 fusion protein 99.5 1.6E-14 5.3E-19 92.7 6.3 60 25-85 22-81 (87)
6 3b5n_D Protein transport prote 99.4 1.2E-12 4.1E-17 80.0 6.8 60 25-85 2-61 (64)
7 3hd7_B Syntaxin-1A; membrane p 96.2 0.018 6E-07 37.3 6.3 58 24-83 13-70 (109)
8 1jth_B Syntaxin 1A; coiled-coi 94.2 0.3 1E-05 29.4 7.1 54 26-81 4-57 (77)
9 3b5n_B Protein SSO1; snare com 93.4 0.37 1.3E-05 28.5 6.3 55 26-82 4-58 (69)
10 1gl2_B Syntaxin 7; membrane pr 93.1 0.33 1.1E-05 28.5 5.8 54 27-82 4-57 (65)
11 2nps_B Syntaxin 13, vesicle-as 92.6 0.68 2.3E-05 27.4 6.7 50 32-82 5-54 (71)
12 1sfc_B Protein (syntaxin 1A), 92.5 0.53 1.8E-05 28.8 6.3 56 25-82 14-69 (83)
13 1n7s_B Syntaxin 1A; neuronal s 92.3 0.94 3.2E-05 26.6 7.1 56 25-82 5-60 (68)
14 3efg_A Protein SLYX homolog; x 81.0 5.8 0.0002 24.2 5.9 50 30-80 11-60 (78)
15 3thf_A Protein shroom; coiled- 71.0 18 0.00061 25.8 6.9 51 12-68 3-53 (190)
16 2qyw_A Vesicle transport throu 68.7 19 0.00064 22.6 7.1 57 25-82 18-83 (102)
17 3onj_A T-snare VTI1; helix, HA 67.6 18 0.00061 22.4 5.8 49 25-74 4-60 (97)
18 1vcs_A Vesicle transport throu 65.4 22 0.00076 22.2 6.8 57 24-81 7-71 (102)
19 2zkr_y 60S ribosomal protein L 64.9 2.3 7.9E-05 28.9 1.2 16 1-16 41-56 (135)
20 1ic2_A Tropomyosin alpha chain 63.9 21 0.00071 21.3 5.8 50 35-85 22-71 (81)
21 3u1c_A Tropomyosin alpha-1 cha 62.4 25 0.00087 21.9 5.8 48 35-83 25-72 (101)
22 4ew8_A Sensor protein DIVL; si 61.9 25 0.00085 23.4 6.0 37 25-61 20-56 (268)
23 1dn1_B Syntaxin 1A, syntaxin b 60.7 8.7 0.0003 27.7 3.7 54 26-81 194-247 (267)
24 1ezj_A Nucleocapsid phosphopro 60.0 27 0.00094 22.8 5.6 37 29-66 69-105 (115)
25 1jcd_A Major outer membrane li 58.9 23 0.00078 20.2 5.6 31 35-66 20-50 (52)
26 2pjw_V Vacuolar protein sortin 54.7 34 0.0012 21.4 5.3 41 33-75 33-74 (91)
27 1l4a_A Synaptobrevin; snare, s 52.8 21 0.00073 21.3 4.0 56 24-81 17-72 (80)
28 3c98_B Syntaxin-1A; protein co 52.2 14 0.00049 25.0 3.5 51 27-79 207-257 (279)
29 2xhe_B Syntaxin1; exocytosis, 48.7 5.6 0.00019 28.6 1.0 57 25-83 210-266 (279)
30 3u59_A Tropomyosin beta chain; 46.0 50 0.0017 20.3 5.8 47 35-82 25-71 (101)
31 4a17_X RPL32, 60S ribosomal pr 43.5 11 0.00039 25.4 1.8 16 1-16 40-55 (134)
32 3j21_b PFEL32, 50S ribosomal p 42.7 10 0.00036 25.5 1.5 16 1-16 46-61 (130)
33 2xze_Q Charged multivesicular 42.2 23 0.00079 19.3 2.6 21 27-47 20-40 (40)
34 3iz5_h 60S ribosomal protein L 42.2 11 0.00037 25.5 1.5 16 1-16 39-54 (133)
35 2nps_A VAMP-4, vesicle-associa 40.1 55 0.0019 19.1 7.3 60 21-82 7-66 (74)
36 2kwh_A RAla-binding protein 1; 40.0 18 0.0006 21.2 2.0 22 50-72 6-27 (56)
37 3u5e_e 60S ribosomal protein L 38.5 11 0.00039 25.3 1.2 16 1-16 38-53 (130)
38 3m48_A General control protein 36.8 47 0.0016 17.4 3.3 23 39-61 6-28 (33)
39 3kqg_A Langerin, C-type lectin 36.3 78 0.0027 20.2 5.1 40 25-66 9-48 (182)
40 1kd8_B GABH BLL, GCN4 acid bas 35.2 53 0.0018 17.5 4.6 27 35-61 3-29 (36)
41 1s0p_A CAP, adenylyl cyclase-a 35.1 80 0.0027 21.8 5.2 41 37-81 8-48 (176)
42 1sfc_A VAMP 2, protein (synapt 33.2 87 0.003 19.3 7.6 56 25-82 33-88 (96)
43 2kxh_B Peptide of FAR upstream 32.7 12 0.00043 19.4 0.5 20 36-55 8-27 (31)
44 1a93_B MAX protein, coiled coi 32.5 28 0.00094 18.4 1.9 12 54-66 17-28 (34)
45 1gd2_E Transcription factor PA 31.8 82 0.0028 18.6 5.6 43 27-70 23-65 (70)
46 3vmx_A Voltage-gated hydrogen 31.6 72 0.0025 17.9 5.3 33 33-66 11-43 (48)
47 3tq2_A KE1; parallel three hel 31.4 36 0.0012 17.8 2.2 15 35-49 3-17 (36)
48 1uo4_A General control protein 31.0 62 0.0021 17.0 3.5 25 37-61 5-29 (34)
49 2js5_A Uncharacterized protein 30.0 69 0.0023 19.3 3.6 23 35-57 5-27 (71)
50 3mq9_A Bone marrow stromal ant 29.2 1.4E+02 0.0047 22.2 6.0 39 35-74 431-469 (471)
51 1nhl_A Synaptosomal-associated 29.0 77 0.0026 17.4 4.3 37 44-81 11-47 (54)
52 3v86_A De novo design helix; c 28.3 60 0.0021 16.0 3.6 14 34-47 8-21 (27)
53 3a2a_A Voltage-gated hydrogen 28.0 94 0.0032 18.1 5.3 32 34-66 19-50 (58)
54 1pwb_A SP-D, PSP-D, pulmonary 27.4 82 0.0028 20.2 4.0 15 33-47 38-52 (177)
55 2bni_A General control protein 26.3 78 0.0027 16.6 3.5 23 36-58 4-26 (34)
56 2dnx_A Syntaxin-12; snare, HAB 25.5 88 0.003 20.0 3.8 33 22-54 10-42 (130)
57 3ra3_A P1C; coiled coil domain 25.4 64 0.0022 16.0 2.4 19 25-47 3-21 (28)
58 2l3n_A DNA-binding protein RAP 24.5 47 0.0016 21.0 2.2 37 47-84 13-49 (104)
59 3na7_A HP0958; flagellar bioge 24.1 1.9E+02 0.0064 20.2 5.8 46 35-81 34-79 (256)
60 1deb_A APC protein, adenomatou 23.5 1.1E+02 0.0038 17.5 6.2 44 36-80 6-49 (54)
61 3zrx_A AF1503 protein, osmolar 23.2 1E+02 0.0035 16.9 6.7 35 25-59 40-74 (115)
62 3oja_A Leucine-rich immune mol 23.1 2.4E+02 0.0081 21.0 6.8 28 54-82 449-476 (487)
63 4i0x_B ESAT-6-like protein MAB 22.8 1.3E+02 0.0044 17.9 5.3 12 35-46 34-45 (103)
64 3zcc_A HAMP, osmolarity sensor 22.3 1.1E+02 0.0038 16.9 6.9 36 25-60 40-75 (114)
65 3he5_B Synzip2; heterodimeric 21.9 1.2E+02 0.0039 17.0 5.4 38 37-77 7-46 (52)
66 1gl2_A Endobrevin; membrane pr 20.7 1.3E+02 0.0043 17.0 6.5 55 23-79 10-64 (65)
67 2kog_A Vesicle-associated memb 20.7 5.5 0.00019 26.0 -2.8 14 68-81 77-90 (119)
68 2fyz_B Fusion protein, fusion 20.7 93 0.0032 17.4 2.8 31 50-81 10-40 (48)
69 2pjw_H Uncharacterized protein 20.4 1.6E+02 0.0055 18.1 4.6 46 31-78 33-79 (88)
70 3ra3_B P2F; coiled coil domain 20.2 53 0.0018 16.3 1.5 14 42-55 2-15 (28)
No 1
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.69 E-value=5e-17 Score=98.84 Aligned_cols=60 Identities=18% Similarity=0.311 Sum_probs=57.6
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
+.+|+|+|+.++.|+.+|++||++|++||+||+.||. +||.|+++||++..+|+.+++|+
T Consensus 2 d~~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~-~Ld~l~~~~d~~~~~l~~~~~rl 61 (66)
T 1n7s_D 2 SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNR-QIDRIMEKADSNKTRIDEANQRA 61 (66)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999 99999999999999999999886
No 2
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.67 E-value=5.2e-17 Score=98.49 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=51.7
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccCC
Q psy7110 26 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARGT 86 (86)
Q Consensus 26 ~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl~ 86 (86)
.+++| |+.|+.|+.+|++||++|++||+||+.||. +||+|+++||++..+|+++++|+.
T Consensus 3 ~~~eq-D~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~-lLd~l~~~~d~~~~~l~~~~~rl~ 61 (65)
T 1gl2_D 3 HMQEQ-DAGLDALSSIISRQKQMGQEIGNELDEQNE-IIDDLANLVENTDEKLRTEARRVT 61 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 667999999999999999999999999999 999999999999999999999863
No 3
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.66 E-value=2.1e-16 Score=101.11 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=58.0
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
+.+++++|+.|++|+..|++||++|++||+||+.||. +||.|+++||++..+|..+++|+
T Consensus 21 d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~-~Ld~i~~~~D~~~~rl~~~~~rl 80 (87)
T 1sfc_D 21 DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNR-QIDRIMEKADSNKTRIDEANQRA 80 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999 99999999999999999998885
No 4
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=100.67 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=51.1
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
+.+++| |+.|+.|+.+|.+||++|++||+||+.||. +||+|+++||++..+|+++++|+
T Consensus 12 ~~~~eQ-D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~-lLd~l~~~~d~~~~~L~~~~~r~ 70 (82)
T 2nps_D 12 NMGRMQ-DEQLELVSGSIGVLKNMSQRIGGELEEQAV-MLEDFSHELESTQSRLDNVMKKL 70 (82)
T ss_dssp -------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777 556999999999999999999999999999 99999999999999999999986
No 5
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.53 E-value=1.6e-14 Score=92.71 Aligned_cols=60 Identities=18% Similarity=0.346 Sum_probs=57.4
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
+.+|.+.|+.|++|+..|++||++|.+||.||+.||. +||.|.+.+|++..+|..+.+|+
T Consensus 22 d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~-~LD~i~~~~D~~~~rl~~~n~r~ 81 (87)
T 1l4a_D 22 DAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNR-QVDRIQQKAESNESRIDEANKKA 81 (87)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTHHHHTHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888999999999999999999999999999999 99999999999999999998875
No 6
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.2e-12 Score=79.99 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=57.0
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
+.+|.|.|+.|++|++.|++||+||.+||.||+.||. +||.+.+..|++..+|..+-+||
T Consensus 2 d~~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~-~ldrI~~k~d~~d~ri~~~~~Rl 61 (64)
T 3b5n_D 2 SEMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQK-RLNNIEESTDDLDINLHMNTNRL 61 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999 99999999999999999888876
No 7
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=96.15 E-value=0.018 Score=37.35 Aligned_cols=58 Identities=16% Similarity=0.317 Sum_probs=51.1
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhc
Q psy7110 24 GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMA 83 (86)
Q Consensus 24 ~~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~ 83 (86)
+..+++..+ .+..|...+.-|.++..++...|.+|-. +||.++..++.+...+..+..
T Consensus 13 l~~i~eR~~-eI~~Ie~~I~eL~~iF~dla~lV~eQge-~Id~Ie~nv~~a~~~v~~g~~ 70 (109)
T 3hd7_B 13 LSEIETRHS-EIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVS 70 (109)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 477788855 4899999999999999999999999999 999999999999887776544
No 8
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=94.15 E-value=0.3 Score=29.39 Aligned_cols=54 Identities=17% Similarity=0.348 Sum_probs=46.7
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 26 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 26 ~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
.+++..+ .+..|...|.-|.+|..++..=|.+|-. +||.++..++.+...+..+
T Consensus 4 ~i~eR~~-ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g 57 (77)
T 1jth_B 4 EIETRHS-EIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERA 57 (77)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHH
Confidence 4566644 5899999999999999999999999999 9999999999888766654
No 9
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=93.36 E-value=0.37 Score=28.51 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=47.4
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhh
Q psy7110 26 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (86)
Q Consensus 26 ~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm 82 (86)
.+++..+ .+..|...|.-|.+|..++..=|.+|-. +||.++..++.+...+....
T Consensus 4 ~i~eR~~-ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~ 58 (69)
T 3b5n_B 4 EVQARHQ-ELLKLEKSMAELTQLFNDMEELVIEQQE-NVDVIDKNVEDAQLDVEQGV 58 (69)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHH
Confidence 4556644 5899999999999999999999999999 99999999999887766543
No 10
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=93.11 E-value=0.33 Score=28.46 Aligned_cols=54 Identities=13% Similarity=0.330 Sum_probs=46.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhh
Q psy7110 27 IHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (86)
Q Consensus 27 le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm 82 (86)
+++. .+.+..|...|.-|.+|..++..=|.+|-. +||.++..++.+...+..+.
T Consensus 4 i~eR-~~~i~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~ 57 (65)
T 1gl2_B 4 MHER-ESSIRQLEADIMDINEIFKDLGMMIHEQGD-VIDSIEANVESAEVHVQQAN 57 (65)
T ss_dssp -CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4445 345799999999999999999999999999 99999999999887776553
No 11
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=92.59 E-value=0.68 Score=27.44 Aligned_cols=50 Identities=12% Similarity=0.266 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhh
Q psy7110 32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (86)
Q Consensus 32 D~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm 82 (86)
.+.+..|...|.-|.+|..++..=|.+|-. +||.++..++.|...+..+.
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~ 54 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGD-LIDSIEANVESSEVHVERAS 54 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 345889999999999999999999999999 99999999999887766543
No 12
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=92.51 E-value=0.53 Score=28.77 Aligned_cols=56 Identities=16% Similarity=0.348 Sum_probs=48.4
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhh
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm 82 (86)
..+++..+ .+..|...|.-|.+|..++..=|.+|-. +||.++..++.+...+..+.
T Consensus 14 ~~i~eR~~-ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~ 69 (83)
T 1sfc_B 14 SEIETRHS-EIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAV 69 (83)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 56677744 5899999999999999999999999999 99999999998887766543
No 13
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=92.33 E-value=0.94 Score=26.59 Aligned_cols=56 Identities=16% Similarity=0.348 Sum_probs=48.4
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhh
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm 82 (86)
..+++..+ .+..|...|.-|.+|..++..=|.+|-. +||.++..++.+...+..+.
T Consensus 5 ~~i~eR~~-ei~~Ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~ 60 (68)
T 1n7s_B 5 SEIETRHS-EIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAV 60 (68)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 45666644 4899999999999999999999999999 99999999999887766543
No 14
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=80.97 E-value=5.8 Score=24.18 Aligned_cols=50 Identities=8% Similarity=-0.042 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhh
Q psy7110 30 ENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (86)
Q Consensus 30 QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~ 80 (86)
+.++++..|..+++-+-..-..+.+.|-.|.. .||.|...+.....+|+.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~-~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARL-TGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999 999999888877777653
No 15
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=70.97 E-value=18 Score=25.82 Aligned_cols=51 Identities=24% Similarity=0.306 Sum_probs=35.5
Q ss_pred CCCCCCCCCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy7110 12 NYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMD 68 (86)
Q Consensus 12 ~~~~~~~~~~~~~~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~ 68 (86)
+||...|++ .+.+--+++++.|..|+..|+.-=..|.+|++.-+. +=..+.
T Consensus 3 ~~~~~~~~~-----~i~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~-lG~~ve 53 (190)
T 3thf_A 3 DPFTEEPTN-----LIKQKMDELIKHLNQKIVSLKREQQTISEECSANDR-LGQDLF 53 (190)
T ss_dssp -------CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred CCCCCCcch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHH
Confidence 466666644 467777889999999999999999999999888777 544443
No 16
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=68.67 E-value=19 Score=22.56 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=43.6
Q ss_pred chHHHhhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhh
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKS---------LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~---------ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm 82 (86)
+.+|+|-.....+|..++.++.. .-..|...+++=.. ||+.|+-..-.+....+..+
T Consensus 18 e~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~e-Ll~qMelE~r~~p~s~R~~~ 83 (102)
T 2qyw_A 18 EKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANE-TLAEMEEELRYAPLTFRNPM 83 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHH
Confidence 66788888889999999998843 44568888888888 99999887777665554443
No 17
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=67.65 E-value=18 Score=22.41 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=38.4
Q ss_pred chHHHhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhHhHHHHhh
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKS--------LTIDIGTEVKYQNEHLLRGMDDDFDRT 74 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~--------ls~~Ig~Ev~~QN~~lLd~l~~~fd~t 74 (86)
...|++-......+..++..+.. .-..|...+++=.. +|+.|+-..-.+
T Consensus 4 ~~YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~e-ll~qMelE~~~~ 60 (97)
T 3onj_A 4 ISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFD-LLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence 34677777888888888887754 44678888888888 999998887777
No 18
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=65.36 E-value=22 Score=22.17 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=42.6
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 24 GDAIHQENEQLTSDLRNKIQALKS--------LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 24 ~~~le~QND~~l~~L~~kV~~LK~--------ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
++.+|++-......|..++..+.. .-..|...+++=.. ||+.|+-..-.+....+..
T Consensus 7 Fe~YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~e-ll~qMelE~r~~p~~~R~~ 71 (102)
T 1vcs_A 7 GEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARE-LLEQMDLEVREIPPQSRGM 71 (102)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHhHHH
Confidence 356688888888999999888765 45568888888888 9999987776665444443
No 19
>2zkr_y 60S ribosomal protein L32; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=64.91 E-value=2.3 Score=28.93 Aligned_cols=16 Identities=44% Similarity=0.831 Sum_probs=11.7
Q ss_pred CchhhhhhccCCCCCC
Q psy7110 1 MDNRMRRQHAGNYYEP 16 (86)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (86)
||||+||.+-|.+--|
T Consensus 41 iDnrvRrrfkG~~~mp 56 (135)
T 2zkr_y 41 IDNRVRRRFKGQILMP 56 (135)
T ss_dssp SSCTTTCC-CCSCCCS
T ss_pred CcccceeeccCCCCCC
Confidence 7999999987765544
No 20
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=63.90 E-value=21 Score=21.34 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhccC
Q psy7110 35 TSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARG 85 (86)
Q Consensus 35 l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~Rl 85 (86)
++.+..++.....-......||..-+. =+-.+.+++|.+...|..+..+|
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~k-Kiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQK-KLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777788888999999888 89999999999998888776543
No 21
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=62.38 E-value=25 Score=21.92 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhc
Q psy7110 35 TSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMA 83 (86)
Q Consensus 35 l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~ 83 (86)
.+.+..++..+..-......||..-+. =+-.+.+++|.+...|.-+..
T Consensus 25 ae~~e~~~k~~e~~~~~~E~Ei~sL~k-k~~~lE~eld~~ee~L~ea~~ 72 (101)
T 3u1c_A 25 AEQAEADKKAAEERSKQLEDDIVQLEK-QLRVTEDSRDQVLEELHKSED 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888889999998887 788899999998888876643
No 22
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=61.89 E-value=25 Score=23.36 Aligned_cols=37 Identities=5% Similarity=0.081 Sum_probs=24.9
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNE 61 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~ 61 (86)
..|+++..+....|.......+.+...|.+|++.--.
T Consensus 20 ~~l~~~l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~ 56 (268)
T 4ew8_A 20 HMLQSALADRSAALAEAERLKRDFVGNVSYELRTPLT 56 (268)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 7777777777788888888888888888888876544
No 23
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=60.73 E-value=8.7 Score=27.65 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=45.6
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 26 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 26 ~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
.+++. .+.+..|...|.-|.+|..++..=|.+|-. +||.++..++.+..-+..+
T Consensus 194 ~i~~R-~~~i~~ie~~i~el~~if~dla~lV~~Qg~-~id~Ie~nv~~a~~~v~~~ 247 (267)
T 1dn1_B 194 EIETR-HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERA 247 (267)
T ss_dssp HHHHH-HHHHHHHHHHHHTTHHHHHHHHHHHHHHCS-GGGCHHHHHHTCCCCCCCC
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHH
Confidence 44555 344889999999999999999999999999 9999999999887766544
No 24
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=60.00 E-value=27 Score=22.83 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=31.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7110 29 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRG 66 (86)
Q Consensus 29 ~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~ 66 (86)
++|+..+.++...|..+|.+-.+.-+--++||. |+-.
T Consensus 69 ~en~~~L~QIQ~ei~s~rd~hkR~~E~QkEQ~S-L~~s 105 (115)
T 1ezj_A 69 DENKQLLKQIQESVESFRDIYKRFSEYQKEQNS-LLMS 105 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHH
Confidence 468899999999999999888888888899998 6643
No 25
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=58.87 E-value=23 Score=20.16 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7110 35 TSDLRNKIQALKSLTIDIGTEVKYQNEHLLRG 66 (86)
Q Consensus 35 l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~ 66 (86)
+++|++.|..||.=.....+|+..=|. =||+
T Consensus 20 VdqLssdV~al~~~v~~ak~eA~RAN~-RlDN 50 (52)
T 1jcd_A 20 ADQASNDANAARSDAQAAKDDAARANQ-RADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhc
Confidence 455555555555555555666666666 5554
No 26
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=54.71 E-value=34 Score=21.39 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHhHHHHhhc
Q psy7110 33 QLTSDLRNKIQALK-SLTIDIGTEVKYQNEHLLRGMDDDFDRTG 75 (86)
Q Consensus 33 ~~l~~L~~kV~~LK-~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~ 75 (86)
..+.+|..+|..+| .|...|++-++.++. |-+|.+.|..+.
T Consensus 33 ~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~--L~~mn~Kls~a~ 74 (91)
T 2pjw_V 33 SKLQNLAQRVFASKARLNYALNDKAQKYNT--LIEMNGKISEIM 74 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 36889999999998 489999999999998 667888877664
No 27
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=52.83 E-value=21 Score=21.34 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=37.7
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 24 GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 24 ~~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
...+..|.++-..-|...|..+=+=+..|.+=++.... |..-...|.+...+|++.
T Consensus 17 l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~--L~~~s~~F~k~A~~l~rk 72 (80)
T 1l4a_A 17 LQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA--LQAGASQFEASAGKLKRK 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTTTSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777777777777655555555 555566777666666554
No 28
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=52.19 E-value=14 Score=25.03 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=42.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhh
Q psy7110 27 IHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLN 79 (86)
Q Consensus 27 le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~ 79 (86)
+++- ...+..+...|..+..+..+|..-|.+|.. .++.+...++.+...+.
T Consensus 207 i~~~-~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~-~~~~I~~nv~~~~~~v~ 257 (279)
T 3c98_B 207 IETR-HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVE 257 (279)
T ss_dssp HHHH-HHHHHHHHHHHHTTHHHHHHHHHHHHHHCS-GGGCHHHHHHTCCCCCC
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3444 345788999999999999999999999999 99999999988765543
No 29
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=48.73 E-value=5.6 Score=28.55 Aligned_cols=57 Identities=14% Similarity=0.304 Sum_probs=45.5
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhc
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMA 83 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~ 83 (86)
..+++. .+.|..|...|.-|.+|..++..=|.+|-. +||.++..++.+...+..+..
T Consensus 210 ~~i~eR-~~eI~~Ie~~i~el~~if~dla~lV~~Qg~-~id~Ie~nv~~~~~~v~~~~~ 266 (279)
T 2xhe_B 210 NEIRDR-HKDIQQLERSLLELHEMFTDMSTLVASQGE-MIDRIEFSVEQSHNYVKKATE 266 (279)
T ss_dssp CTTTHH-HHHHHHHHHHHHHHHHHHHHHHTTTTTSCS-STTCHHHHHHTCCCCC-----
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345555 445899999999999999999999999999 999999999999887765543
No 30
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=46.00 E-value=50 Score=20.34 Aligned_cols=47 Identities=9% Similarity=0.168 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhh
Q psy7110 35 TSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (86)
Q Consensus 35 l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm 82 (86)
.+.+..++..+..-......||..-+. =+-.+.+++|.+...|..+.
T Consensus 25 ae~~e~~~k~~e~~~~~~E~ei~sL~k-Kiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 25 AEQAEADKKQAEDRCKQLEEEQQGLQK-KLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777777777777 67777777777777666543
No 31
>4a17_X RPL32, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_X 4a1c_X 4a1e_X
Probab=43.55 E-value=11 Score=25.40 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=12.7
Q ss_pred CchhhhhhccCCCCCC
Q psy7110 1 MDNRMRRQHAGNYYEP 16 (86)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (86)
||||+||.+-|.+--|
T Consensus 40 iDnrvRrrfKG~~~mp 55 (134)
T 4a17_X 40 IDNRVRRRFRGQRRMA 55 (134)
T ss_dssp SSCTGGGTCTTSCCCC
T ss_pred cccchhhcccCccCCC
Confidence 7999999988775444
No 32
>3j21_b PFEL32, 50S ribosomal protein L32E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.75 E-value=10 Score=25.46 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.1
Q ss_pred CchhhhhhccCCCCCC
Q psy7110 1 MDNRMRRQHAGNYYEP 16 (86)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (86)
||||+||.+-|.+--|
T Consensus 46 iDnrvRrrfKG~~~mp 61 (130)
T 3j21_b 46 IDSKMRLKLKGKPRSP 61 (130)
T ss_dssp SSCHHHHTCTTSCCCC
T ss_pred cccchhccccCCCCCC
Confidence 7999999988776555
No 33
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=42.19 E-value=23 Score=19.27 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=15.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHH
Q psy7110 27 IHQENEQLTSDLRNKIQALKS 47 (86)
Q Consensus 27 le~QND~~l~~L~~kV~~LK~ 47 (86)
.+++.++.+++|.+++.+|++
T Consensus 20 e~edeEedi~~MqsRLaALRS 40 (40)
T 2xze_Q 20 DEEEEEEALEAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHHHHHHHHHHHhcC
Confidence 455556678999999988873
No 34
>3iz5_h 60S ribosomal protein L32 (L32E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_h 2zkr_9
Probab=42.18 E-value=11 Score=25.47 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=13.0
Q ss_pred CchhhhhhccCCCCCC
Q psy7110 1 MDNRMRRQHAGNYYEP 16 (86)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (86)
||||+||.+-|.+--|
T Consensus 39 iDnrvRrrfkG~~~mp 54 (133)
T 3iz5_h 39 IDSRVRRKFKGCTLMP 54 (133)
T ss_dssp TTCHHHHTCTTSCCCC
T ss_pred cccchhccccCCcCCC
Confidence 7999999988766555
No 35
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=40.10 E-value=55 Score=19.09 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=49.2
Q ss_pred CCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhh
Q psy7110 21 FDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (86)
Q Consensus 21 ~~~~~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm 82 (86)
.+....+..|.++-.+-|...|..+=+=+..|.+=+..... |..-...|.+...+|++.|
T Consensus 7 ~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~--L~~~s~~F~~~a~~l~r~~ 66 (74)
T 2nps_A 7 NDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES--LSDNATAFSNRSKQLRRQM 66 (74)
T ss_dssp CSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 34568889999998899999999999999998877776666 7888889998888887654
No 36
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=40.04 E-value=18 Score=21.17 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHH
Q psy7110 50 IDIGTEVKYQNEHLLRGMDDDFD 72 (86)
Q Consensus 50 ~~Ig~Ev~~QN~~lLd~l~~~fd 72 (86)
..|..|++.|-. +|+.|+..+.
T Consensus 6 e~I~~El~kQe~-lL~~LH~e~~ 27 (56)
T 2kwh_A 6 AGIKEEIRRQEF-LLNSLHRDLQ 27 (56)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTTC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHH
Confidence 468899999999 9999988764
No 37
>3u5e_e 60S ribosomal protein L32, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_h 1s1i_0 3izs_h 3o5h_b 3o58_b 3u5i_e 4b6a_e 3jyw_0
Probab=38.51 E-value=11 Score=25.28 Aligned_cols=16 Identities=38% Similarity=0.729 Sum_probs=12.8
Q ss_pred CchhhhhhccCCCCCC
Q psy7110 1 MDNRMRRQHAGNYYEP 16 (86)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (86)
||||+||.+-|.+--|
T Consensus 38 iDnrvRrrfkG~~~mp 53 (130)
T 3u5e_e 38 IDSVVRRRFRGNISQP 53 (130)
T ss_dssp SSCTTTTTCTTSCCCC
T ss_pred cccchhccccCCcCCC
Confidence 7999999988775444
No 38
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=36.82 E-value=47 Score=17.37 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 39 RNKIQALKSLTIDIGTEVKYQNE 61 (86)
Q Consensus 39 ~~kV~~LK~ls~~Ig~Ev~~QN~ 61 (86)
..||.-|-.=-.++.+||..=..
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333333333344444444333
No 39
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=36.33 E-value=78 Score=20.18 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=25.3
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRG 66 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~ 66 (86)
+.|.++.+ .+..|..+|..|+.--..|...+..|+. ++.-
T Consensus 9 ~~l~~~~~-~~~~l~~~~~~l~~~l~~~~~~l~~~~~-~~~~ 48 (182)
T 3kqg_A 9 PELKSDLE-KASALNTKIRALQGSLENMSKLLKRQND-ILQV 48 (182)
T ss_dssp ----CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 34444444 4677888888887777777777777777 6543
No 40
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=35.18 E-value=53 Score=17.47 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 35 TSDLRNKIQALKSLTIDIGTEVKYQNE 61 (86)
Q Consensus 35 l~~L~~kV~~LK~ls~~Ig~Ev~~QN~ 61 (86)
+.+|..||.-|.+=-.++.+||..=-.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455555665555555555555554433
No 41
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=35.10 E-value=80 Score=21.80 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 37 DLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 37 ~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
-+.+.|..+-.++..||.+|..|-. + +...|..-+..|--+
T Consensus 8 ~i~~~l~~~~~~s~~iGg~v~~~a~-~---v~~aF~~qr~~L~~a 48 (176)
T 1s0p_A 8 LVDQHITPFVALSKKLAPEVGNQVE-Q---LVKAIDAEKALINTA 48 (176)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH-H---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHH-H---HHHHHHHHHHHHHHH
Confidence 4788999999999999999999999 5 456777766666543
No 42
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=33.17 E-value=87 Score=19.32 Aligned_cols=56 Identities=7% Similarity=0.150 Sum_probs=36.5
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhh
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm 82 (86)
..+..|.++-.+-|...|..+=+=+..|.+=++.... |..-...|.+...+|++.|
T Consensus 33 ~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~--L~~~S~~F~k~A~kl~rkm 88 (96)
T 1sfc_A 33 QQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA--LQAGASQFETSAAKLKRKY 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666776655555555 6666778887777776643
No 43
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=32.71 E-value=12 Score=19.38 Aligned_cols=20 Identities=15% Similarity=0.478 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7110 36 SDLRNKIQALKSLTIDIGTE 55 (86)
Q Consensus 36 ~~L~~kV~~LK~ls~~Ig~E 55 (86)
+.....|.|.|+|+-.|+.+
T Consensus 8 daFadA~~RaRQIaAKig~~ 27 (31)
T 2kxh_B 8 DAFKDALQRARQIAAKIGGD 27 (31)
T ss_dssp SHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 34567789999999999865
No 44
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=32.55 E-value=28 Score=18.38 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhh
Q psy7110 54 TEVKYQNEHLLRG 66 (86)
Q Consensus 54 ~Ev~~QN~~lLd~ 66 (86)
+|++.||. +|+.
T Consensus 17 ddlkrQN~-~Le~ 28 (34)
T 1a93_B 17 DDLKRQNA-LLEQ 28 (34)
T ss_dssp HHHHHHHH-HHHH
T ss_pred HHHHHHHH-HHHH
Confidence 57888888 7764
No 45
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=31.82 E-value=82 Score=18.64 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=28.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHH
Q psy7110 27 IHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDD 70 (86)
Q Consensus 27 le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~ 70 (86)
+-+--++.+.+|..+|..|......+..|...--. .+..|...
T Consensus 23 fReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~-~i~~L~~E 65 (70)
T 1gd2_E 23 FRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQ-KVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34445678899999999999887777666554444 44444433
No 46
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=31.61 E-value=72 Score=17.93 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7110 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRG 66 (86)
Q Consensus 33 ~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~ 66 (86)
+..+.|..+|..|.........|+..=|. ||-+
T Consensus 11 e~n~~L~~kv~~Le~~c~~~eQEieRL~~-LLkq 43 (48)
T 3vmx_A 11 QINIQLATKIQHLEFSCSEKEQEIERLNK-LLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHH
Confidence 34567899999999999999999998888 7753
No 47
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=31.45 E-value=36 Score=17.83 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy7110 35 TSDLRNKIQALKSLT 49 (86)
Q Consensus 35 l~~L~~kV~~LK~ls 49 (86)
+.+|..||+.||.-.
T Consensus 3 vsalkekvsalkeqf 17 (36)
T 3tq2_A 3 VSALKEKVSALKEQF 17 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 456777888877643
No 48
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=31.03 E-value=62 Score=17.00 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 37 DLRNKIQALKSLTIDIGTEVKYQNE 61 (86)
Q Consensus 37 ~L~~kV~~LK~ls~~Ig~Ev~~QN~ 61 (86)
+|..||.-|=+=-..+.+||..=..
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444443334444555544444
No 49
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=30.00 E-value=69 Score=19.34 Aligned_cols=23 Identities=13% Similarity=0.395 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 35 TSDLRNKIQALKSLTIDIGTEVK 57 (86)
Q Consensus 35 l~~L~~kV~~LK~ls~~Ig~Ev~ 57 (86)
+++|...|..|+..+..+--++-
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLH 27 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLH 27 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 67899999999999887766654
No 50
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=29.21 E-value=1.4e+02 Score=22.23 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhh
Q psy7110 35 TSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRT 74 (86)
Q Consensus 35 l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t 74 (86)
.+.|..+|+..-.--.....||..+|. -|.++...+.+.
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 469 (471)
T 3mq9_A 431 MASLDAEKAQGQKKVEELEGEITTLNH-KLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 345556665533344566778888888 777777666553
No 51
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=29.03 E-value=77 Score=17.44 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 44 ALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 44 ~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
--+.+++.+-.++..|-. -|+.....++....-|+.+
T Consensus 11 ese~~g~~Tl~~L~~QgE-ql~r~~~~ld~i~~~l~~a 47 (54)
T 1nhl_A 11 ESQDAGIKTITMLDEQKE-QLNRIEEGLDQINKDMRET 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHh-hHHHHHhHHHHHHhHHHHH
Confidence 345567777777777777 6666666666666555544
No 52
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=28.26 E-value=60 Score=15.97 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q psy7110 34 LTSDLRNKIQALKS 47 (86)
Q Consensus 34 ~l~~L~~kV~~LK~ 47 (86)
.+.+|.+.|++||.
T Consensus 8 evgelkgevralkd 21 (27)
T 3v86_A 8 EVGELKGEVRALKD 21 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHH
Confidence 35666666666653
No 53
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=27.99 E-value=94 Score=18.08 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7110 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRG 66 (86)
Q Consensus 34 ~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~ 66 (86)
.-..|..||..|+.--.....|+..=|. ||-+
T Consensus 19 ~n~~L~~kv~~Le~~c~e~eQEieRL~~-LLkq 50 (58)
T 3a2a_A 19 MNVQLAAKIQHLEFSCSEKEQEIERLNK-LLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3457889999999999999999999999 8764
No 54
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=27.38 E-value=82 Score=20.20 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy7110 33 QLTSDLRNKIQALKS 47 (86)
Q Consensus 33 ~~l~~L~~kV~~LK~ 47 (86)
..+..|..+|..++.
T Consensus 38 ~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 38 GQVQHLQAAFSQYKK 52 (177)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 445666666666665
No 55
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=26.33 E-value=78 Score=16.61 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 36 SDLRNKIQALKSLTIDIGTEVKY 58 (86)
Q Consensus 36 ~~L~~kV~~LK~ls~~Ig~Ev~~ 58 (86)
.+|..||.-|=+=...+.+||..
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~R 26 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHH
Confidence 34444444444444455555544
No 56
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.52 E-value=88 Score=20.02 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=25.7
Q ss_pred CCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 22 DGGDAIHQENEQLTSDLRNKIQALKSLTIDIGT 54 (86)
Q Consensus 22 ~~~~~le~QND~~l~~L~~kV~~LK~ls~~Ig~ 54 (86)
+.+..+-+.....|-.+...|+.|+.+-..||.
T Consensus 10 ~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT 42 (130)
T 2dnx_A 10 RDFSSIIQTCSGNIQRISQATAQIKNLMSQLGT 42 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356777777777888888899999988777774
No 57
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.42 E-value=64 Score=15.99 Aligned_cols=19 Identities=53% Similarity=0.691 Sum_probs=9.8
Q ss_pred chHHHhhHHHHHHHHHHHHHHHH
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKS 47 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ 47 (86)
+.+|=+|| .|..||..||+
T Consensus 3 dalefend----aleqkiaalkq 21 (28)
T 3ra3_A 3 DALEFEND----ALEQKIAALKQ 21 (28)
T ss_dssp CHHHHHHH----HHHHHHHHHHH
T ss_pred chHHhccH----HHHHHHHHHHH
Confidence 34555655 34455555554
No 58
>2l3n_A DNA-binding protein RAP1, telomere length regulat; TAZ1; NMR {Schizosaccharomyces pombe}
Probab=24.52 E-value=47 Score=20.96 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhhhcc
Q psy7110 47 SLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMAR 84 (86)
Q Consensus 47 ~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm~R 84 (86)
.+-.+|.+=+++-|. --.++-+.|++++++++.+..+
T Consensus 13 evdeaidnilrytns-teqqfleamestggrvriaiak 49 (104)
T 2l3n_A 13 EVDEAIDNILRYTNS-TEQQFLEAMESTGGRVRIAIAK 49 (104)
T ss_dssp HHHHHHHHHHHHHTC-CHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccc-hHHHHHHHHHhcCCeeehHHHH
Confidence 345566666777776 6666777889999988877654
No 59
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.12 E-value=1.9e+02 Score=20.23 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 35 TSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 35 l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
+..|...+..++.--..+..++..-.. -+..+..+++.+..++...
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~-~~~~~e~~i~~~~~ri~~~ 79 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKL-QVSKNEQTLQDTNAKIASI 79 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555 5555555555555544443
No 60
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=23.48 E-value=1.1e+02 Score=17.46 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhh
Q psy7110 36 SDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (86)
Q Consensus 36 ~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~ 80 (86)
|+|...|..||-=...+..|+++-.. -|..|..+-......|+.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~-~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSN-HLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHH-HHHHHHhhhhhHHHHHHH
Confidence 34455566666666777778877666 688777766655555443
No 61
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=23.22 E-value=1e+02 Score=16.94 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=18.9
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQ 59 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~Q 59 (86)
..+-...+..++.|...+...+.+...+.+|++.-
T Consensus 40 ~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~~ 74 (115)
T 3zrx_A 40 GILAKSIERLRRSLKQLADDRTLLMAGVSHDLRTP 74 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445556666666666555555555555443
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.05 E-value=2.4e+02 Score=21.02 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhHhHHHHhhcchhhhhh
Q psy7110 54 TEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (86)
Q Consensus 54 ~Ev~~QN~~lLd~l~~~fd~t~~~L~~tm 82 (86)
.|-...-. +|++++...+.+...+..+.
T Consensus 449 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 449 EENARLKK-LNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhh-hhhhhhhhhHhcccHHHHHH
Confidence 34444455 66677777777776666554
No 63
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=22.80 E-value=1.3e+02 Score=17.88 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q psy7110 35 TSDLRNKIQALK 46 (86)
Q Consensus 35 l~~L~~kV~~LK 46 (86)
|+.|...|..|.
T Consensus 34 l~~L~~~v~~L~ 45 (103)
T 4i0x_B 34 LDQLESRAQKLV 45 (103)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 64
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=22.33 E-value=1.1e+02 Score=16.92 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=25.2
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQN 60 (86)
Q Consensus 25 ~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN 60 (86)
..+-...+...+.|...+...+.+...+.+|++.--
T Consensus 40 ~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl 75 (114)
T 3zcc_A 40 GILAKSIERLRRSLKQLADDGTLLMAGVSHDLRTPL 75 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcChH
Confidence 455556666777777777777777777777777543
No 65
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.85 E-value=1.2e+02 Score=16.98 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhHhHHHHhhcch
Q psy7110 37 DLRNKIQALKSLTIDIGTEVKYQN--EHLLRGMDDDFDRTGGF 77 (86)
Q Consensus 37 ~L~~kV~~LK~ls~~Ig~Ev~~QN--~~lLd~l~~~fd~t~~~ 77 (86)
-|..||.+||.=...+. -++|| . ++-+|.+.+.+..+.
T Consensus 7 ylrkkiarlkkdnlqle--rdeqnlek-iianlrdeiarlene 46 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLE--RDEQNLEK-IIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhh--hhHhhHHH-HHHHHHHHHHHHHHH
Confidence 46788888887655553 34444 4 677777776665543
No 66
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.75 E-value=1.3e+02 Score=17.03 Aligned_cols=55 Identities=9% Similarity=0.148 Sum_probs=40.7
Q ss_pred CcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhh
Q psy7110 23 GGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLN 79 (86)
Q Consensus 23 ~~~~le~QND~~l~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~ 79 (86)
....+..|.++-..-|...|..+=+=+..|..=+..... |..-...|-+...+|+
T Consensus 10 ~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~--L~~~s~~F~k~A~~l~ 64 (65)
T 1gl2_A 10 RVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTED--LEATSEHFKTTSQKVA 64 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 457788888888888888888888888888776666666 6777778877766654
No 67
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=20.74 E-value=5.5 Score=25.98 Aligned_cols=14 Identities=14% Similarity=0.359 Sum_probs=6.8
Q ss_pred hHHHHhhcchhhhh
Q psy7110 68 DDDFDRTGGFLNNS 81 (86)
Q Consensus 68 ~~~fd~t~~~L~~t 81 (86)
...|.+...+|++.
T Consensus 77 S~~F~k~A~kl~rk 90 (119)
T 2kog_A 77 ASQFETSAAKLKRK 90 (119)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555443
No 68
>2fyz_B Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=20.69 E-value=93 Score=17.36 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 50 IDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 50 ~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
+||..|+..=|. -|++-.+-++.+...|...
T Consensus 10 LDISseL~~iNn-sL~~A~~~I~eSn~~L~~V 40 (48)
T 2fyz_B 10 IDISTELSKVNA-SLQNTVKYIKESNHQLQSV 40 (48)
T ss_dssp -CHHHHHHHHHH-HHHHHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 345555555555 4555555555444444443
No 69
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=20.38 E-value=1.6e+02 Score=18.12 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHhHHHHhhcchh
Q psy7110 31 NEQLTSDLRNKIQALK-SLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFL 78 (86)
Q Consensus 31 ND~~l~~L~~kV~~LK-~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L 78 (86)
+|..+.+|-.+|..|| +|+.-|+.=....+. |-.|.+.|-.+...-
T Consensus 33 ~d~eiq~LY~~v~~lRPkL~~li~kysqKk~e--L~~Ln~kl~~a~~~Y 79 (88)
T 2pjw_H 33 QDPHIGDMYGSVTPLRPQVTRMLGKYAKEKED--MLSLRQVLANAERSY 79 (88)
T ss_dssp SCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3456899999999998 588888888888887 778888887776543
No 70
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.23 E-value=53 Score=16.29 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy7110 42 IQALKSLTIDIGTE 55 (86)
Q Consensus 42 V~~LK~ls~~Ig~E 55 (86)
|++||+-...+..|
T Consensus 2 irrlkqknarlkqe 15 (28)
T 3ra3_B 2 IRRLKQKNARLKQE 15 (28)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHH
Confidence 33444443333333
Done!