Query psy7110
Match_columns 86
No_of_seqs 103 out of 353
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 18:26:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7110.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7110hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vcsa1 a.47.2.1 (A:8-96) Vesi 60.6 11 0.00078 21.8 5.2 53 27-80 3-63 (89)
2 d1tjla1 a.2.14.1 (A:7-110) Dna 48.9 6.2 0.00045 23.7 2.7 33 12-46 15-57 (104)
3 d1io1a_ e.32.1.1 (A:) Phase 1 33.8 15 0.0011 23.5 2.9 21 32-52 23-43 (395)
4 d1vqoy1 c.9.2.1 (Y:95-236) Rib 33.7 7.1 0.00052 25.0 1.2 16 1-16 55-70 (142)
5 d1s0pa_ a.192.1.1 (A:) N-termi 28.3 58 0.0042 20.9 5.2 41 37-81 8-48 (176)
6 d1p3wa_ c.67.1.3 (A:) Cysteine 23.2 25 0.0018 23.3 2.6 23 28-50 362-384 (391)
7 d1bf5a1 a.47.1.1 (A:136-316) S 22.9 73 0.0053 20.3 4.9 32 36-72 5-36 (181)
8 d1bg1a1 a.47.1.1 (A:136-321) S 19.1 97 0.0071 19.7 4.9 24 36-59 7-30 (186)
9 d1gs9a_ a.24.1.1 (A:) Apolipop 17.0 1E+02 0.0073 18.1 4.6 26 32-57 6-31 (144)
10 d1wa8a1 a.25.3.1 (A:1-99) ESAT 16.3 85 0.0062 16.9 5.3 18 29-46 22-39 (99)
No 1
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=60.62 E-value=11 Score=21.81 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=39.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhh
Q psy7110 27 IHQENEQLTSDLRNKIQALKS--------LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (86)
Q Consensus 27 le~QND~~l~~L~~kV~~LK~--------ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~ 80 (86)
.|+|--....++..|+.++.. .-..|...+++=.. ||+.|+-.+-+.-...+.
T Consensus 3 YE~~y~~l~a~i~~kl~~i~~~~geerk~~l~~ie~~leEA~e-ll~qMelEvr~~p~s~R~ 63 (89)
T d1vcsa1 3 YEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARE-LLEQMDLEVREIPPQSRG 63 (89)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHHH-HHHHHHHHHHhCCHHHHH
Confidence 366777778888888877755 55678888888899 999998777665544443
No 2
>d1tjla1 a.2.14.1 (A:7-110) DnaK suppressor protein DksA, alpha-hairpin domain {Escherichia coli [TaxId: 562]}
Probab=48.94 E-value=6.2 Score=23.71 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCc----------chHHHhhHHHHHHHHHHHHHHH
Q psy7110 12 NYYEPVPNQFDGG----------DAIHQENEQLTSDLRNKIQALK 46 (86)
Q Consensus 12 ~~~~~~~~~~~~~----------~~le~QND~~l~~L~~kV~~LK 46 (86)
.||.|.|.-. | ..|+++-.++++.+...+..+.
T Consensus 15 ~pY~p~~~e~--YMn~~QL~~Fr~~L~~~k~eL~~e~~~t~~~~~ 57 (104)
T d1tjla1 15 EPYQEKPGEE--YMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQ 57 (104)
T ss_dssp CCCCCCTTCC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6888888655 7 3444444444444444444443
No 3
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=33.85 E-value=15 Score=23.49 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7110 32 EQLTSDLRNKIQALKSLTIDI 52 (86)
Q Consensus 32 D~~l~~L~~kV~~LK~ls~~I 52 (86)
|..|+++...+.|+|+|++.=
T Consensus 23 e~al~~~~~iL~r~reLavqa 43 (395)
T d1io1a_ 23 EGALNEINNNLQRVRELAVQS 43 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 667899999999999999853
No 4
>d1vqoy1 c.9.2.1 (Y:95-236) Ribosomal protein L32e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=33.68 E-value=7.1 Score=25.03 Aligned_cols=16 Identities=19% Similarity=0.046 Sum_probs=12.8
Q ss_pred CchhhhhhccCCCCCC
Q psy7110 1 MDNRMRRQHAGNYYEP 16 (86)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (86)
|||||||.+-|.+--|
T Consensus 55 iDnkvRr~~KG~~~mp 70 (142)
T d1vqoy1 55 QLSKQRRGIKGKGDTV 70 (142)
T ss_dssp TTCTTTTTCTTSCCCC
T ss_pred CcchhhccccCCCCCC
Confidence 7999999987766555
No 5
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=28.28 E-value=58 Score=20.86 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcchhhhh
Q psy7110 37 DLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (86)
Q Consensus 37 ~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd~t~~~L~~t 81 (86)
-+.+.|..+-.++..||.+|.+|-. ++. ..|+..+..|..+
T Consensus 8 ~i~~~v~~~~~~s~~Igg~V~~~a~-~v~---~aF~~qr~~L~~a 48 (176)
T d1s0pa_ 8 LVDQHITPFVALSKKLAPEVGNQVE-QLV---KAIDAEKALINTA 48 (176)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH-HHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHH-HHH---HHHHHHHHHHHHH
Confidence 4778999999999999999999999 655 4566655555443
No 6
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}
Probab=23.19 E-value=25 Score=23.33 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Q psy7110 28 HQENEQLTSDLRNKIQALKSLTI 50 (86)
Q Consensus 28 e~QND~~l~~L~~kV~~LK~ls~ 50 (86)
+++.|..++.|...|.+||.++-
T Consensus 362 ~edid~l~~~l~~~l~~lr~~~~ 384 (391)
T d1p3wa_ 362 EEEIDYTIELVRKSIGRLRDLSP 384 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCh
Confidence 56779999999999999999864
No 7
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.93 E-value=73 Score=20.32 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Q psy7110 36 SDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFD 72 (86)
Q Consensus 36 ~~L~~kV~~LK~ls~~Ig~Ev~~QN~~lLd~l~~~fd 72 (86)
.+|.++|..+|....+|..+++. |.++.++|+
T Consensus 5 ~ei~~~v~~l~~~vq~~e~~ik~-----Led~Qd~fd 36 (181)
T d1bf5a1 5 KELDSKVRNVKDKVMCIEHEIKS-----LEDLQDEYD 36 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 46788888999888888888874 555666664
No 8
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.07 E-value=97 Score=19.75 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 36 SDLRNKIQALKSLTIDIGTEVKYQ 59 (86)
Q Consensus 36 ~~L~~kV~~LK~ls~~Ig~Ev~~Q 59 (86)
.+|..+|..||....+|..+++.=
T Consensus 7 ~ei~~~v~~l~~~~q~~e~~ik~L 30 (186)
T d1bg1a1 7 QMLEQHLQDVRKRVQDLEQKMKVV 30 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999998743
No 9
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=17.01 E-value=1e+02 Score=18.08 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7110 32 EQLTSDLRNKIQALKSLTIDIGTEVK 57 (86)
Q Consensus 32 D~~l~~L~~kV~~LK~ls~~Ig~Ev~ 57 (86)
|..++.+-..|..++..+.+.-++++
T Consensus 6 e~~~d~f~~y~~~l~~~a~~~~~~l~ 31 (144)
T d1gs9a_ 6 ELALGRFWDYLRWVQTLSEQVQEELL 31 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44566666667776666666555443
No 10
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.26 E-value=85 Score=16.91 Aligned_cols=18 Identities=6% Similarity=0.134 Sum_probs=8.9
Q ss_pred HhhHHHHHHHHHHHHHHH
Q psy7110 29 QENEQLTSDLRNKIQALK 46 (86)
Q Consensus 29 ~QND~~l~~L~~kV~~LK 46 (86)
.+.+..+..|...|..|.
T Consensus 22 ~~l~~~l~~l~~~v~~l~ 39 (99)
T d1wa8a1 22 GDLKTQIDQVESTAGSLQ 39 (99)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555555553
Done!