Query psy7111
Match_columns 87
No_of_seqs 102 out of 349
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 18:27:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3385|consensus 99.9 1.9E-22 4.1E-27 137.7 5.1 82 4-86 1-88 (118)
2 PF05739 SNARE: SNARE domain; 99.3 1.1E-11 2.5E-16 73.9 6.0 56 30-86 1-56 (63)
3 KOG3202|consensus 99.2 2.1E-11 4.5E-16 91.6 6.3 60 25-86 145-204 (235)
4 cd00193 t_SNARE Soluble NSF (N 99.1 4.6E-10 1E-14 65.1 6.2 58 29-87 2-59 (60)
5 smart00397 t_SNARE Helical reg 99.0 4.8E-09 1E-13 61.6 7.0 62 25-87 4-65 (66)
6 KOG3065|consensus 98.6 1.5E-07 3.2E-12 72.2 7.9 62 25-87 210-271 (273)
7 PF09753 Use1: Membrane fusion 93.6 0.35 7.6E-06 35.9 6.8 56 30-86 164-219 (251)
8 PF12352 V-SNARE_C: Snare regi 91.0 1.4 3.1E-05 26.1 5.9 55 27-83 3-57 (66)
9 PF04102 SlyX: SlyX; InterPro 85.6 6.2 0.00013 24.1 6.4 49 32-81 3-51 (69)
10 PRK00846 hypothetical protein; 85.4 7 0.00015 25.0 6.6 52 29-81 9-60 (77)
11 KOG0810|consensus 84.3 3.2 6.9E-05 32.4 5.6 58 26-85 200-257 (297)
12 PF07889 DUF1664: Protein of u 83.1 5.5 0.00012 27.5 5.8 50 29-79 64-113 (126)
13 PF01519 DUF16: Protein of unk 76.4 18 0.00039 24.4 6.5 48 32-80 52-99 (102)
14 PRK00736 hypothetical protein; 75.8 16 0.00034 22.4 6.2 47 33-80 5-51 (68)
15 PRK04325 hypothetical protein; 70.7 23 0.00049 22.0 6.2 47 33-80 9-55 (74)
16 COG5325 t-SNARE complex subuni 70.4 18 0.00039 28.4 6.1 57 29-86 191-247 (283)
17 PRK00295 hypothetical protein; 69.2 24 0.00051 21.6 6.2 47 33-80 5-51 (68)
18 PF07889 DUF1664: Protein of u 68.3 35 0.00077 23.5 6.6 47 27-75 77-123 (126)
19 PRK04406 hypothetical protein; 68.1 27 0.00058 21.9 6.2 49 31-80 9-57 (75)
20 PF05957 DUF883: Bacterial pro 65.9 31 0.00066 21.7 7.2 53 26-78 2-54 (94)
21 PRK02793 phi X174 lysis protei 64.9 31 0.00066 21.4 6.5 49 31-80 6-54 (72)
22 PRK02119 hypothetical protein; 64.7 31 0.00068 21.4 6.6 49 31-80 7-55 (73)
23 KOG0811|consensus 63.8 26 0.00057 27.0 5.8 53 32-85 179-231 (269)
24 PF04728 LPP: Lipoprotein leuc 62.7 32 0.00069 20.8 6.4 40 30-70 14-53 (56)
25 KOG2678|consensus 62.3 26 0.00056 26.9 5.4 53 33-86 155-207 (244)
26 PF11902 DUF3422: Protein of u 59.9 29 0.00062 28.4 5.6 39 32-70 311-350 (420)
27 cd00513 Ribosomal_L32_L32e Rib 58.8 0.91 2E-05 30.8 -2.6 16 1-16 24-39 (107)
28 PRK09973 putative outer membra 57.1 52 0.0011 21.4 5.9 36 32-68 37-72 (85)
29 PF05531 NPV_P10: Nucleopolyhe 54.9 36 0.00079 21.7 4.4 47 32-79 17-66 (75)
30 PF12718 Tropomyosin_1: Tropom 50.5 81 0.0018 21.8 6.1 48 34-82 15-62 (143)
31 PF09824 ArsR: ArsR transcript 50.1 14 0.0003 26.8 2.1 44 43-87 104-147 (160)
32 KOG0878|consensus 49.8 13 0.00029 25.8 1.9 16 1-16 40-55 (124)
33 PF08181 DegQ: DegQ (SacQ) fam 49.2 51 0.0011 19.0 4.5 33 41-74 5-37 (46)
34 PRK04654 sec-independent trans 46.8 76 0.0017 24.0 5.7 38 33-72 27-64 (214)
35 COG2900 SlyX Uncharacterized p 46.8 74 0.0016 20.2 6.4 51 29-80 4-54 (72)
36 KOG1666|consensus 46.0 1.1E+02 0.0024 23.2 6.5 58 24-82 5-70 (220)
37 PRK01371 sec-independent trans 44.6 91 0.002 21.9 5.5 47 33-79 27-92 (137)
38 PF08614 ATG16: Autophagy prot 43.3 1.1E+02 0.0023 21.8 5.9 46 32-78 115-160 (194)
39 PRK09973 putative outer membra 42.7 94 0.002 20.2 5.6 46 34-80 25-70 (85)
40 PRK01770 sec-independent trans 42.7 1.1E+02 0.0023 22.3 5.8 39 33-73 27-65 (171)
41 PF04728 LPP: Lipoprotein leuc 41.9 78 0.0017 19.1 6.5 47 34-81 4-50 (56)
42 cd00179 SynN Syntaxin N-termin 41.4 87 0.0019 20.6 4.9 26 32-57 12-37 (151)
43 PF14227 UBN2_2: gag-polypepti 39.7 37 0.00081 21.6 2.8 47 33-81 43-89 (119)
44 PRK10884 SH3 domain-containing 38.2 1.6E+02 0.0035 21.6 7.0 53 25-78 96-148 (206)
45 PF08518 GIT_SHD: Spa2 homolog 38.1 42 0.00091 18.0 2.3 16 43-58 11-26 (31)
46 PF10267 Tmemb_cc2: Predicted 35.7 1.7E+02 0.0037 23.9 6.5 57 24-80 260-316 (395)
47 KOG3650|consensus 35.4 1.1E+02 0.0024 20.9 4.6 35 25-61 64-98 (120)
48 PF05008 V-SNARE: Vesicle tran 35.2 1E+02 0.0022 18.4 5.0 41 34-75 4-52 (79)
49 COG4949 Uncharacterized membra 33.0 1.1E+02 0.0024 24.9 5.0 49 32-81 311-360 (424)
50 COG5074 t-SNARE complex subuni 32.4 1.1E+02 0.0025 23.8 4.8 49 34-83 186-234 (280)
51 PF14523 Syntaxin_2: Syntaxin- 31.7 86 0.0019 19.4 3.5 21 34-54 4-24 (102)
52 KOG0860|consensus 31.5 1.8E+02 0.0038 20.0 6.6 56 25-82 32-87 (116)
53 PF07097 DUF1359: Protein of u 31.2 1.6E+02 0.0036 19.6 4.9 35 33-68 9-43 (102)
54 PRK01919 tatB sec-independent 31.1 2.1E+02 0.0046 20.9 5.9 26 35-60 29-54 (169)
55 KOG0809|consensus 30.9 1.2E+02 0.0025 24.2 4.7 54 32-86 217-270 (305)
56 PTZ00159 60S ribosomal protein 30.9 25 0.00055 24.6 1.0 16 1-16 39-54 (133)
57 PF04912 Dynamitin: Dynamitin 30.8 2.2E+02 0.0047 22.4 6.3 47 37-84 333-379 (388)
58 PRK12766 50S ribosomal protein 30.8 31 0.00068 26.2 1.5 16 1-16 140-155 (232)
59 PRK04098 sec-independent trans 29.2 2.2E+02 0.0048 20.5 5.8 37 34-72 28-64 (158)
60 PF00261 Tropomyosin: Tropomyo 29.1 1.7E+02 0.0036 21.4 5.1 51 34-85 16-66 (237)
61 PRK08562 rpl32e 50S ribosomal 28.6 30 0.00064 24.0 1.0 16 1-16 41-56 (125)
62 PF08372 PRT_C: Plant phosphor 28.2 1.1E+02 0.0024 21.7 3.9 47 25-79 39-90 (156)
63 PF04880 NUDE_C: NUDE protein, 27.9 42 0.0009 24.2 1.7 36 25-61 17-52 (166)
64 TIGR03752 conj_TIGR03752 integ 27.5 2.5E+02 0.0055 23.6 6.3 34 25-58 76-109 (472)
65 smart00503 SynN Syntaxin N-ter 27.3 1.6E+02 0.0035 18.3 4.9 25 32-56 14-38 (117)
66 KOG3208|consensus 27.2 2.8E+02 0.006 21.3 6.0 65 12-79 130-194 (231)
67 PRK10604 sensor protein RstB; 27.0 2E+02 0.0044 22.2 5.4 53 6-58 172-225 (433)
68 PF05082 Rop-like: Rop-like; 26.2 1.7E+02 0.0036 18.2 4.0 25 34-58 3-27 (66)
69 PF01655 Ribosomal_L32e: Ribos 25.8 27 0.00059 23.6 0.4 16 1-16 26-41 (110)
70 PF12548 DUF3740: Sulfatase pr 25.8 88 0.0019 22.0 3.0 22 28-49 108-129 (145)
71 COG1717 RPL32 Ribosomal protei 25.5 1.5E+02 0.0032 20.9 4.0 16 1-16 46-61 (133)
72 PF03908 Sec20: Sec20; InterP 25.3 1.8E+02 0.0039 18.2 6.5 37 48-85 23-59 (92)
73 smart00502 BBC B-Box C-termina 24.9 1.8E+02 0.0038 18.0 5.5 10 63-72 62-71 (127)
74 PF01213 CAP_N: Adenylate cycl 24.3 2.4E+02 0.0051 22.2 5.4 42 36-81 51-92 (312)
75 PF09730 BicD: Microtubule-ass 24.2 3.9E+02 0.0086 23.6 7.1 18 2-19 236-253 (717)
76 PF14293 YWFCY: YWFCY protein 24.0 1.1E+02 0.0025 18.7 2.9 21 32-52 3-23 (61)
77 PF12718 Tropomyosin_1: Tropom 22.7 2.6E+02 0.0057 19.2 6.4 51 34-85 50-103 (143)
78 PF07326 DUF1466: Protein of u 22.7 97 0.0021 23.7 2.8 28 29-56 197-224 (233)
79 PF02646 RmuC: RmuC family; I 22.4 2.7E+02 0.0059 21.3 5.3 37 40-77 233-269 (304)
80 PRK15396 murein lipoprotein; P 22.3 2.2E+02 0.0047 18.1 6.0 35 34-69 40-74 (78)
81 PF05377 FlaC_arch: Flagella a 22.2 1.9E+02 0.0041 17.3 5.3 28 34-61 8-35 (55)
82 KOG1853|consensus 22.0 2.3E+02 0.0051 22.5 4.9 35 26-61 151-185 (333)
83 PF05565 Sipho_Gp157: Siphovir 21.9 2.8E+02 0.0062 19.2 7.0 59 27-86 34-92 (162)
84 PF04380 BMFP: Membrane fusoge 21.6 2.1E+02 0.0046 17.7 5.5 51 35-85 12-66 (79)
85 PRK00404 tatB sec-independent 21.6 3E+02 0.0065 19.4 5.3 39 33-73 27-65 (141)
86 PF15136 UPF0449: Uncharacteri 21.4 2.4E+02 0.0053 18.7 4.3 33 25-57 63-95 (97)
87 KOG2991|consensus 21.1 2.4E+02 0.0052 22.4 4.8 51 25-76 220-278 (330)
88 PF05791 Bacillus_HBL: Bacillu 21.0 3.1E+02 0.0068 19.4 6.7 45 34-79 104-148 (184)
89 PF04740 LXG: LXG domain of WX 21.0 3E+02 0.0064 19.1 5.6 21 65-85 141-161 (204)
No 1
>KOG3385|consensus
Probab=99.86 E-value=1.9e-22 Score=137.68 Aligned_cols=82 Identities=43% Similarity=0.603 Sum_probs=72.8
Q ss_pred hhhhhccCCCCCC----CCCCCCCc--chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccc
Q psy7111 4 RMRRQHAGNYYEP----VPNQFDGG--DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGF 77 (87)
Q Consensus 4 ~~~~~~~~~~~~~----~~~~~~~~--~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~ 77 (87)
||+|.++.++-+| ..+++|+| +.+|.|||++++.|..||.+||.|+++|++||+.||+ +||.|+++||+|+++
T Consensus 1 r~~R~g~~dg~~~l~~~~~~a~ss~~~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnk-lld~mdddfdsts~~ 79 (118)
T KOG3385|consen 1 RGSRFGLFDGSNGLEDGVSRASSSSHLASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNK-LLDGMDDDFDSTSGF 79 (118)
T ss_pred CCcccCcccCCCcccccccccCchhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHH-HHHHhccchhhhHHH
Confidence 6889988888666 22233334 7888999999999999999999999999999999999 999999999999999
Q ss_pred hhHhhhhcc
Q psy7111 78 LNNSMARSF 86 (87)
Q Consensus 78 L~~t~~Rl~ 86 (87)
|++||+|++
T Consensus 80 L~gtm~r~~ 88 (118)
T KOG3385|consen 80 LSGTMGRLK 88 (118)
T ss_pred HHHHHHHHH
Confidence 999999986
No 2
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.28 E-value=1.1e-11 Score=73.93 Aligned_cols=56 Identities=34% Similarity=0.484 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhcc
Q psy7111 30 ENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSF 86 (87)
Q Consensus 30 QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~ 86 (87)
|+++.|+.|+..|..||+++.+|+.||.+|+. +||.+++.|+.|...|..+.++|.
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~-~ld~i~~~vd~~~~~l~~~~~~l~ 56 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNE-MLDRIEDNVDRANENLKKGNKKLK 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999 999999999999999999999875
No 3
>KOG3202|consensus
Probab=99.23 E-value=2.1e-11 Score=91.56 Aligned_cols=60 Identities=27% Similarity=0.475 Sum_probs=55.7
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhcc
Q psy7111 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSF 86 (87)
Q Consensus 25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~ 86 (87)
+.+++| |+.|+.|++.|++||++|..||+|++.|+. |||+|+++||.|.++|.++++++.
T Consensus 145 qm~~eQ-De~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~-llDdl~~e~d~t~srl~~~~~~l~ 204 (235)
T KOG3202|consen 145 QMLQEQ-DEGLDGLSATVQRLKGMALAMGEELEEQGR-LLDDLDNEMDRTESRLDRVMKRLA 204 (235)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 789999999999999999999999999999 999999999999999999999875
No 4
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.09 E-value=4.6e-10 Score=65.15 Aligned_cols=58 Identities=31% Similarity=0.428 Sum_probs=54.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111 29 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH 87 (87)
Q Consensus 29 ~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r 87 (87)
++.++.++.|+..|..|++++.+|+.||..|+. +||.+.+.|+.+...++.+.+++.+
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~-~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGE-LLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345778999999999999999999999999999 9999999999999999999999864
No 5
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=98.95 E-value=4.8e-09 Score=61.57 Aligned_cols=62 Identities=27% Similarity=0.412 Sum_probs=56.4
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH 87 (87)
Q Consensus 25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r 87 (87)
..+.++.++.++.|+..|..|++++.+|+.||..|+. +||.+.+.++.+...++.+.+++.+
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~-~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGE-QLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 3445556789999999999999999999999999999 9999999999999999999998864
No 6
>KOG3065|consensus
Probab=98.64 E-value=1.5e-07 Score=72.21 Aligned_cols=62 Identities=26% Similarity=0.382 Sum_probs=58.9
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH 87 (87)
Q Consensus 25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r 87 (87)
...|.+.|+.|++|+..+..||.||.++|.||+.||. .||.+.+.+|+....+..+-+|+++
T Consensus 210 ~~~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~-~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 210 PAAEDEIDENLDQLSAILGRLKNMALDMGSEIESQNE-RLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred ChhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 6778888999999999999999999999999999999 9999999999999999999999864
No 7
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=93.65 E-value=0.35 Score=35.90 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhcc
Q psy7111 30 ENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSF 86 (87)
Q Consensus 30 QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~ 86 (87)
..|...++|..=.+.||+-+..+++=+++.+. .|+.....+|+....|+....|++
T Consensus 164 ~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~-~L~~~~~~~d~n~~~l~~~~~rl~ 219 (251)
T PF09753_consen 164 LQEDLTEEMLSLARQLKENSLAFSQILKEDNK-VLDRTEEGLDRNLSSLKRESKRLK 219 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33568899999999999999999999999999 999999999999999999988875
No 8
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=90.98 E-value=1.4 Score=26.06 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=44.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhh
Q psy7111 27 IHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMA 83 (87)
Q Consensus 27 le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~ 83 (87)
|.++++ .|+.=...+.-.-++|.+|-.++..|+. .|......++.+...|..+-+
T Consensus 3 l~~e~~-~L~~s~~~~~e~~~~g~~~l~~L~~Qre-~L~~~~~kl~~i~~~l~~s~~ 57 (66)
T PF12352_consen 3 LLRESD-SLQRSHRMADETEEIGAATLEDLRSQRE-QLKRVRDKLDDIDSNLPKSNS 57 (66)
T ss_dssp HHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHH
Confidence 445544 6677777788888999999999999999 999999888888877765543
No 9
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=85.59 E-value=6.2 Score=24.11 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHh
Q psy7111 32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (87)
Q Consensus 32 D~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t 81 (87)
+++|..|..++.-+-..-..+.+.|-.|.. .|+.|...+.....+|+..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~-~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQR-QIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 568899999999999999999999999999 9999999988888877653
No 10
>PRK00846 hypothetical protein; Provisional
Probab=85.39 E-value=7 Score=24.96 Aligned_cols=52 Identities=8% Similarity=-0.052 Sum_probs=46.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHh
Q psy7111 29 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (87)
Q Consensus 29 ~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t 81 (87)
+..+++++.|..+|.-+-..-..+.+.|-.|.. .|+.|...+.....+|+.+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~-~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARL-TGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 445678999999999999999999999999999 9999999998888888764
No 11
>KOG0810|consensus
Probab=84.28 E-value=3.2 Score=32.37 Aligned_cols=58 Identities=16% Similarity=0.375 Sum_probs=48.1
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111 26 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS 85 (87)
Q Consensus 26 ~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl 85 (87)
.+++--+ .+-.|...+.-|.+|-.+|-..|+.|-. +||.+...+.++...+..+...+
T Consensus 200 Eiq~Rh~-~ik~LEksi~ELhqlFlDMa~LVe~QgE-mvd~IE~nV~~A~~~V~~g~~~~ 257 (297)
T KOG0810|consen 200 EIQERHD-EIKKLEKSIRELHQLFLDMAVLVESQGE-MVDRIENNVENAVDYVEQGVDHL 257 (297)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433 5678999999999999999999999999 99999999999888777765544
No 12
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=83.06 E-value=5.5 Score=27.54 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=38.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchh
Q psy7111 29 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLN 79 (87)
Q Consensus 29 ~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~ 79 (87)
.+.-++|+.|..|+...+.++..|.+||.+=.. -++.+..+++..+..+.
T Consensus 64 khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~-dv~~i~~dv~~v~~~V~ 113 (126)
T PF07889_consen 64 KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRE-DVSQIGDDVDSVQQMVE 113 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 445567888888888888899999988887777 78888888877665544
No 13
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=76.45 E-value=18 Score=24.38 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhH
Q psy7111 32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (87)
Q Consensus 32 D~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~ 80 (87)
.++++.|..+|..+-.-=.....|++.|.. .|+.+...+.....+|..
T Consensus 52 geqI~kL~e~V~~QGEqIkel~~e~k~qgk-tL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 52 GEQINKLTEKVDKQGEQIKELQVEQKAQGK-TLQLILKTLQSINKRLDK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 345556666666555544555566677888 777777777777766653
No 14
>PRK00736 hypothetical protein; Provisional
Probab=75.79 E-value=16 Score=22.43 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhH
Q psy7111 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (87)
Q Consensus 33 ~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~ 80 (87)
.+++.|..+|..+-..-..+.+.|-.|.+ .|+.|...+.....+|+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~-~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWK-TVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999 899888887777666654
No 15
>PRK04325 hypothetical protein; Provisional
Probab=70.68 E-value=23 Score=22.05 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhH
Q psy7111 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (87)
Q Consensus 33 ~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~ 80 (87)
+++..|..+|..+-..-..+.+.|-.|.. .|+.|...+.....+|+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~-~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQ-TLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999 899888887777666654
No 16
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=70.42 E-value=18 Score=28.36 Aligned_cols=57 Identities=25% Similarity=0.289 Sum_probs=51.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhcc
Q psy7111 29 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSF 86 (87)
Q Consensus 29 ~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~ 86 (87)
.+-++.+..|+.-|.-|-.|-.+++.=|.+|.. +.|.++--++.|...++++-+-|.
T Consensus 191 ~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~-lVdrID~Ni~~t~~n~k~A~kEL~ 247 (283)
T COG5325 191 TERDEEIKNLARGIYELNEIFRDLGSLVGEQGE-LVDRIDFNIENTSDNLKNANKELE 247 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHhhhhhhhhHHHHhhHHHHH
Confidence 344778899999999999999999999999999 999999999999999999877653
No 17
>PRK00295 hypothetical protein; Provisional
Probab=69.21 E-value=24 Score=21.63 Aligned_cols=47 Identities=4% Similarity=0.006 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhH
Q psy7111 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (87)
Q Consensus 33 ~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~ 80 (87)
+++..|..+|..+-..-..+.+.|-.|.+ .|+.|...+.....+|+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~-~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQR-VIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999 899888888777666654
No 18
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=68.32 E-value=35 Score=23.53 Aligned_cols=47 Identities=11% Similarity=0.461 Sum_probs=29.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhc
Q psy7111 27 IHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTG 75 (87)
Q Consensus 27 le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~ 75 (87)
++++. +....+...|..++.=...|+.+++.=+. +...|+..+++..
T Consensus 77 lDe~~-ei~~~i~~eV~~v~~dv~~i~~dv~~v~~-~V~~Le~ki~~ie 123 (126)
T PF07889_consen 77 LDEQK-EISKQIKDEVTEVREDVSQIGDDVDSVQQ-MVEGLEGKIDEIE 123 (126)
T ss_pred HHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 44443 35566666666666666677777776666 6666666665544
No 19
>PRK04406 hypothetical protein; Provisional
Probab=68.14 E-value=27 Score=21.88 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhH
Q psy7111 31 NEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (87)
Q Consensus 31 ND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~ 80 (87)
-++++..|..+|..+-..-..+.+.|-.|.. .|+.|...+.....+|+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~-~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQL-LITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999999 999998888777666654
No 20
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=65.93 E-value=31 Score=21.73 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=36.3
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccch
Q psy7111 26 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFL 78 (87)
Q Consensus 26 ~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L 78 (87)
.+.++.+..++.+..-++.++..+....+++++.-...++.+.+.+..+...+
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~ 54 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQA 54 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777888888888888888888888777766656665555555444333
No 21
>PRK02793 phi X174 lysis protein; Provisional
Probab=64.94 E-value=31 Score=21.35 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhH
Q psy7111 31 NEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (87)
Q Consensus 31 ND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~ 80 (87)
.++++..|..+|..+-..-..+.+.|-.|.. .|+.|...+.....+|+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~-~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEM-EMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 3568899999999999999999999999999 888888887777666654
No 22
>PRK02119 hypothetical protein; Provisional
Probab=64.74 E-value=31 Score=21.40 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhH
Q psy7111 31 NEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (87)
Q Consensus 31 ND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~ 80 (87)
.++++..|..+|.-+-..-..+.+.|-.|.+ -|+.|...+.....+|+.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~-~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQF-VIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 3568899999999999999999999999999 899988888777666654
No 23
>KOG0811|consensus
Probab=63.76 E-value=26 Score=27.03 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111 32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS 85 (87)
Q Consensus 32 D~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl 85 (87)
++.+..|..-|.-|-.|-.+++.=|.+|.. ++|++.+.++.|......+...|
T Consensus 179 ~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~-~VDsIe~nve~a~~nveqg~~~L 231 (269)
T KOG0811|consen 179 EQAIEQLEADIIDVNEIFKDLGSLVHEQGE-LVDSIEANVENASVNVEQGTENL 231 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHhHHHHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999999999 99999999999988777665544
No 24
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=62.74 E-value=32 Score=20.81 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHH
Q psy7111 30 ENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDD 70 (87)
Q Consensus 30 QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~ 70 (87)
+....++.|+.-|..++.=..+..+|+..-|. =||++...
T Consensus 14 ~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~-RlDN~a~s 53 (56)
T PF04728_consen 14 TLNSKVDQLSSDVNALRADVQAAKEEAARANQ-RLDNIAQS 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHhh
Confidence 34456778888888888888888889988888 88877543
No 25
>KOG2678|consensus
Probab=62.34 E-value=26 Score=26.93 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhcc
Q psy7111 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSF 86 (87)
Q Consensus 33 ~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~ 86 (87)
+..+.|..-++.||..+.+-++=+++.|+ -|..+.-.+|.....|+....|+.
T Consensus 155 eLaesll~LArslKtnalAfqsalkeDnQ-vl~~~~k~~D~N~~~L~~~Serve 207 (244)
T KOG2678|consen 155 ELAESLLKLARSLKTNALAFQSALKEDNQ-VLGAAEKGIDVNSQGLMDVSERVE 207 (244)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHH-HHHHHHHHHhHHHHHHHhhhHHHH
Confidence 46788889999999999999999999999 999999999998888887777653
No 26
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=59.93 E-value=29 Score=28.35 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHhHH
Q psy7111 32 EQLTSDLRNKIQALKS-LTIDIGTEVKYQNEHLLRGMDDD 70 (87)
Q Consensus 32 D~~ld~L~~kV~~LK~-lsi~Ig~Ev~~Qn~~lLd~l~~~ 70 (87)
.++++.|+.+|.+.-+ |-..|.-+++.||..||..|+.-
T Consensus 311 ~~R~~~Ls~rv~Ra~~LLRTrVdv~le~QN~~LL~SM~rR 350 (420)
T PF11902_consen 311 ERRQEDLSRRVARATDLLRTRVDVELEQQNQDLLASMDRR 350 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3567889999888766 45788999999999899988753
No 27
>cd00513 Ribosomal_L32_L32e Ribosomal_L32_L32e: L32 is a protein from the large subunit that contains a surface-exposed globular domain and a finger-like projection that extends into the RNA core to stabilize the tertiary structure. L32 does not appear to play a role in forming the A (aminacyl), P (peptidyl) or E (exit) sites of the ribosome, but does interact with 23S rRNA, which has a "kink-turn" secondary structure motif. L32 is overexpressed in human prostate cancer and has been identified as a stably expressed housekeeping gene in macrophages of human chronic obstructive pulmonary disease (COPD) patients. In Schizosaccharomyces pombe, L32 has also been suggested to play a role as a transcriptional regulator in the nucleus. Found in archaea and eukaryotes, this protein is known as L32 in eukaryotes and L32e in archaea.
Probab=58.81 E-value=0.91 Score=30.77 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=13.3
Q ss_pred CchhhhhhccCCCCCC
Q psy7111 1 MDNRMRRQHAGNYYEP 16 (87)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (87)
||||+||.+-|.+--|
T Consensus 24 iDnkvRrr~kg~~~mp 39 (107)
T cd00513 24 IDNKVRRRFKGKPAMP 39 (107)
T ss_pred cccchhccccCCCCCC
Confidence 7999999988876655
No 28
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=57.14 E-value=52 Score=21.44 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy7111 32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMD 68 (87)
Q Consensus 32 D~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~ 68 (87)
...++.+...|..+|.=+..-.+|+..=|+ =||+++
T Consensus 37 ~~kvdql~~dv~~a~aaa~aAk~EA~RAN~-RiDN~~ 72 (85)
T PRK09973 37 NAKIARLEQDMKALRPQIYAAKSEANRANT-RLDAQD 72 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHH
Confidence 345566777777777777777888888888 788764
No 29
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=54.91 E-value=36 Score=21.67 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHhHHHHhhccchh
Q psy7111 32 EQLTSDLRNKIQALKSLTID---IGTEVKYQNEHLLRGMDDDFDRTGGFLN 79 (87)
Q Consensus 32 D~~ld~L~~kV~~LK~lsi~---Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~ 79 (87)
+..+++|...|..|+.-.-+ |..-++.|.. -|+.++..+..-...|.
T Consensus 17 d~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~-~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 17 DDKVDALQTQVDDLESNLPDVTELNKKLDAQSA-QLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC
Confidence 44667777777777775555 7777888998 89999988887766654
No 30
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=50.54 E-value=81 Score=21.75 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhh
Q psy7111 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (87)
Q Consensus 34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~ 82 (87)
.++.+..+|..|.+-......||..=+. =+..+..+++.+...|..+.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~-K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQK-KNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555666666555444 45555555555555554443
No 31
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=50.12 E-value=14 Score=26.81 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111 43 QALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH 87 (87)
Q Consensus 43 ~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r 87 (87)
.-|+.+...|..||+.-|. -|.++...|......|++..+|..+
T Consensus 104 eel~~~~e~i~~~v~~Gn~-Sl~~lsr~l~~sp~firglAKRs~~ 147 (160)
T PF09824_consen 104 EELRDYVEKIEKEVEAGNT-SLSDLSRKLGISPVFIRGLAKRSPK 147 (160)
T ss_pred HHHHHHHHHHHHHHHcCCC-cHHHHHHHhCCCHHHHHHHHHhccC
Confidence 4688899999999999999 9999999999999999999998653
No 32
>KOG0878|consensus
Probab=49.78 E-value=13 Score=25.80 Aligned_cols=16 Identities=44% Similarity=0.831 Sum_probs=12.9
Q ss_pred CchhhhhhccCCCCCC
Q psy7111 1 MDNRMRRQHAGNYYEP 16 (87)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (87)
||||.||.+-|.---|
T Consensus 40 iDnrVrRRFkgqilMP 55 (124)
T KOG0878|consen 40 IDNRVRRRFKGQILMP 55 (124)
T ss_pred chhHHHHHhccceecc
Confidence 7999999998765555
No 33
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=49.25 E-value=51 Score=19.04 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhh
Q psy7111 41 KIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRT 74 (87)
Q Consensus 41 kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t 74 (87)
++.-||++--.+.+|+++-.. -|.+++.++|..
T Consensus 5 ~ieelkqll~rle~eirett~-sl~ninksidq~ 37 (46)
T PF08181_consen 5 KIEELKQLLWRLENEIRETTD-SLRNINKSIDQY 37 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHH
Confidence 566788899999999999998 888888877764
No 34
>PRK04654 sec-independent translocase; Provisional
Probab=46.81 E-value=76 Score=23.98 Aligned_cols=38 Identities=5% Similarity=-0.023 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Q psy7111 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFD 72 (87)
Q Consensus 33 ~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd 72 (87)
+....|+.-|+.+|.....+.+|+...-. +++|...+.
T Consensus 27 e~aRtlGk~irk~R~~~~~vk~El~~El~--~~ELrk~l~ 64 (214)
T PRK04654 27 KAARFAGLWVRRARMQWDSVKQELERELE--AEELKRSLQ 64 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHH
Confidence 34556777777777777777777766554 344444333
No 35
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.75 E-value=74 Score=20.20 Aligned_cols=51 Identities=10% Similarity=0.091 Sum_probs=41.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhH
Q psy7111 29 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (87)
Q Consensus 29 ~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~ 80 (87)
.+.++++.+|..++..+-..=..+.+-|-+|-. .++.+...+.-...+++.
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~-~i~k~q~qlr~L~~kl~~ 54 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQL-VIDKLQAQLRLLTEKLKD 54 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 345678999999999998888889999999998 888887777766666543
No 36
>KOG1666|consensus
Probab=46.00 E-value=1.1e+02 Score=23.19 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=44.9
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhh
Q psy7111 24 GDAIHQENEQLTSDLRNKIQALKS--------LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (87)
Q Consensus 24 ~~~le~QND~~ld~L~~kV~~LK~--------lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~ 82 (87)
.+.+|+|--.+...+.+|+.++-. +-..|..-+++=+. ||+.|+-.+-..-..+++.+
T Consensus 5 fe~yEqqy~~l~a~it~k~~~~~~~~~~ekk~~l~~i~~~leEa~e-ll~qMdlEvr~lp~~~Rs~~ 70 (220)
T KOG1666|consen 5 FEGYEQQYRELSAEITKKIGRALSLPGSEKKQLLSEIDSKLEEANE-LLDQMDLEVRELPPNFRSSY 70 (220)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHhHHHHHH-HHHHHHHHHHhCCchhhhHH
Confidence 366788888888999999988744 45677888888899 99999988877666555443
No 37
>PRK01371 sec-independent translocase; Provisional
Probab=44.56 E-value=91 Score=21.90 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhhHhHHHHhhccchh
Q psy7111 33 QLTSDLRNKIQALKSLTIDIGTEVKYQN-------------------EHLLRGMDDDFDRTGGFLN 79 (87)
Q Consensus 33 ~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn-------------------~~lLd~l~~~fd~t~~~L~ 79 (87)
+.+..|+..|+.+|..+....+++++.- +||+++++++++....-++
T Consensus 27 ~~ar~lg~~ir~~R~~~~~ak~~i~~Elg~ef~d~d~r~l~Pr~~vrk~l~d~~~~~~~~~~~~~~ 92 (137)
T PRK01371 27 KAARDAGRTLRQLREMANNARNDLRSELGPEFADLDLRDLNPKTFVRKHLLEDLDDDIDEIKLGLK 92 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccchhhcCHHHHHHHHHhhcchhhhhhhhhhHH
Confidence 4567788888888887666555555432 3478888887776655443
No 38
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=43.30 E-value=1.1e+02 Score=21.75 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccch
Q psy7111 32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFL 78 (87)
Q Consensus 32 D~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L 78 (87)
...+..|...+..|+.=-.+...|+++.+. .+..+.+.+....--+
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k-~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNK-ANEILQDELQALQLQL 160 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 557788888888888888899999999999 9999999887655433
No 39
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=42.71 E-value=94 Score=20.22 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhH
Q psy7111 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (87)
Q Consensus 34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~ 80 (87)
.++.|++.|+.|+.=...+..++..-.. -.+.--++-.++..+|.+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~a-aa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRP-QIYAAKSEANRANTRLDA 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhh
Confidence 6788899999999888888888888777 676666677777666654
No 40
>PRK01770 sec-independent translocase; Provisional
Probab=42.70 E-value=1.1e+02 Score=22.28 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHh
Q psy7111 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDR 73 (87)
Q Consensus 33 ~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~ 73 (87)
..+..|+.-|+.+|.+...+.+|+...-. ++++...+..
T Consensus 27 ~~~r~lg~~i~~~R~~~~~~k~e~~~E~~--~~El~~~l~~ 65 (171)
T PRK01770 27 VAVKTVAGWIRALRSLATTVQNELTQELK--LQELQDSLKK 65 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHH
Confidence 45667888889999998888888888776 5665554443
No 41
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=41.90 E-value=78 Score=19.09 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHh
Q psy7111 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (87)
Q Consensus 34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t 81 (87)
-++.|++-|+.|+.=--.|..||..-.. -+...-++-.++..+|.+-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~-~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRA-DVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 4677777777777666666666666555 4555556666666666553
No 42
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=41.41 E-value=87 Score=20.64 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111 32 EQLTSDLRNKIQALKSLTIDIGTEVK 57 (87)
Q Consensus 32 D~~ld~L~~kV~~LK~lsi~Ig~Ev~ 57 (87)
...|..|...|..|..+-..++...+
T Consensus 12 ~~~i~~i~~~v~~l~~l~~~~~t~~~ 37 (151)
T cd00179 12 RGNIDKISEDVEELQKLHSQLLTAPD 37 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34556666666666666666666554
No 43
>PF14227 UBN2_2: gag-polypeptide of LTR copia-type
Probab=39.69 E-value=37 Score=21.62 Aligned_cols=47 Identities=28% Similarity=0.284 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHh
Q psy7111 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (87)
Q Consensus 33 ~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t 81 (87)
.++..+...+..|+.++..|.+|..- .. +|..|-.+|+.....|..+
T Consensus 43 ~hi~~~~~l~~~L~~~g~~i~d~~~~-~~-lL~sLP~sy~~~~~~l~~~ 89 (119)
T PF14227_consen 43 DHINEFRSLVNQLKSLGVPIDDEDKV-II-LLSSLPPSYDSFVTALLYS 89 (119)
T ss_pred HHHHHHHHHHHhhccccccchHHHHH-HH-HHHcCCHhHHHHHHHHHcc
Confidence 57889999999999999999999664 34 6999999999877665443
No 44
>PRK10884 SH3 domain-containing protein; Provisional
Probab=38.17 E-value=1.6e+02 Score=21.64 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=25.9
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccch
Q psy7111 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFL 78 (87)
Q Consensus 25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L 78 (87)
..+|.|..+.-+.|.+.-...++....+.+++...+. .+.+|...-......|
T Consensus 96 p~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDS-VINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3455555544444444444445555555555555555 4444444444443333
No 45
>PF08518 GIT_SHD: Spa2 homology domain (SHD) of GIT; InterPro: IPR013724 GIT proteins are signalling integrators with GTPase-activating function which may be involved in the organisation of the cytoskeletal matrix assembled at active zones (CAZ). The function of the CAZ might be to define sites of neurotransmitter release. Mutations in the Spa2 homology domain (SHD) domain of GIT1 described here interfere with the association of GIT1 with Piccolo, beta-PIX, and focal adhesion kinase [].
Probab=38.07 E-value=42 Score=17.96 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7111 43 QALKSLTIDIGTEVKY 58 (87)
Q Consensus 43 ~~LK~lsi~Ig~Ev~~ 58 (87)
..+..|+++|.+|++.
T Consensus 11 ~~F~eL~~DV~~E~~R 26 (31)
T PF08518_consen 11 QRFEELATDVYDELDR 26 (31)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678899999999975
No 46
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.73 E-value=1.7e+02 Score=23.87 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=45.5
Q ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhH
Q psy7111 24 GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN 80 (87)
Q Consensus 24 ~~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~ 80 (87)
|+.||+|-++.++.--.-|..||+==-.|.+=+.+|...=.-++.+.|+...++|..
T Consensus 260 ~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisk 316 (395)
T PF10267_consen 260 YERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISK 316 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 367888888888888888889998777888888888766777888888887777653
No 47
>KOG3650|consensus
Probab=35.40 E-value=1.1e+02 Score=20.89 Aligned_cols=35 Identities=14% Similarity=0.333 Sum_probs=22.1
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNE 61 (87)
Q Consensus 25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~ 61 (87)
+.||=|| -|+.|+..|..+|.=...+..|-.-=.+
T Consensus 64 QVLELQn--TLdDLSqRVdsVKEEnLKLrSENQVLGQ 98 (120)
T KOG3650|consen 64 QVLELQN--TLDDLSQRVDSVKEENLKLRSENQVLGQ 98 (120)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 3444453 4688888888888877776665433333
No 48
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=35.17 E-value=1e+02 Score=18.41 Aligned_cols=41 Identities=24% Similarity=0.474 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhHhHHHHhhc
Q psy7111 34 LTSDLRNKIQALKSLT--------IDIGTEVKYQNEHLLRGMDDDFDRTG 75 (87)
Q Consensus 34 ~ld~L~~kV~~LK~ls--------i~Ig~Ev~~Qn~~lLd~l~~~fd~t~ 75 (87)
.++.+..++..++..+ ..|...+++=.. +|+.|.-.+-.+.
T Consensus 4 l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~-~l~qMe~E~~~~p 52 (79)
T PF05008_consen 4 LTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEE-LLKQMELEVRSLP 52 (79)
T ss_dssp HHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCC
Confidence 4455666666665432 456666666677 7777776665554
No 49
>COG4949 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=33.00 E-value=1.1e+02 Score=24.93 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHh
Q psy7111 32 EQLTSDLRNKIQALKS-LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (87)
Q Consensus 32 D~~ld~L~~kV~~LK~-lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t 81 (87)
|++.+.|+.|+.+--. +-.-|+-|++.||..+|..|+... ..+.+|..|
T Consensus 311 eeRqanLSrklaRat~LlRtwidve~erQN~~lL~~Md~ra-~lQlrLQqt 360 (424)
T COG4949 311 EERQANLSRKLARATALLRTWIDVELERQNQELLNSMDARA-QLQLRLQQT 360 (424)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhhHHH-HHHHHHHHH
Confidence 4566788888876544 456799999999998888887543 233444433
No 50
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=32.41 E-value=1.1e+02 Score=23.81 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhh
Q psy7111 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMA 83 (87)
Q Consensus 34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~ 83 (87)
.+--|...+.-|-+|--+|..+|-+|.. +.|-++..+..+...+.....
T Consensus 186 ~ikkiEkt~ael~qLfndm~~~V~eq~e-~Vd~I~~~~~~~~~n~~~g~~ 234 (280)
T COG5074 186 EIKKIEKTMAELTQLFNDMEELVIEQQE-NVDVIDKNVEDAQENVEQGVG 234 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHhhHhhHHhhHHHhhh
Confidence 4567888899999999999999999999 999999888877766655443
No 51
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=31.73 E-value=86 Score=19.43 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7111 34 LTSDLRNKIQALKSLTIDIGT 54 (87)
Q Consensus 34 ~ld~L~~kV~~LK~lsi~Ig~ 54 (87)
.|-.+...|+.|+.+...||.
T Consensus 4 ~l~~in~~v~~l~k~~~~lGt 24 (102)
T PF14523_consen 4 NLFKINQNVSQLEKLVNQLGT 24 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 344555556666666555553
No 52
>KOG0860|consensus
Probab=31.47 E-value=1.8e+02 Score=20.04 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=41.2
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhh
Q psy7111 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM 82 (87)
Q Consensus 25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~ 82 (87)
+.++.|-|+-++-|...|...=+=+..+ +|+++-.+ -|......|.++..+|++-|
T Consensus 32 ~~tq~QvdeVv~IMr~NV~KVlER~ekL-~~L~drad-~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 32 QQTQAQVDEVVDIMRENVEKVLERGEKL-DELDDRAD-QLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcchH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777766655555 46666677 78888888988888887643
No 53
>PF07097 DUF1359: Protein of unknown function (DUF1359); InterPro: IPR010772 This family consists of several hypothetical bacterial and phage proteins of around 100 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this species. The function of this family is unknown.
Probab=31.16 E-value=1.6e+02 Score=19.61 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy7111 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMD 68 (87)
Q Consensus 33 ~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~ 68 (87)
++++....|+.+||.+--+|.+..+---- ++|++.
T Consensus 9 ~~I~~~q~K~~RLk~~IH~vr~Q~~~~~i-~~D~~k 43 (102)
T PF07097_consen 9 EQIAKIQTKICRLKNVIHAVRRQTELVKI-VLDDLK 43 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHh
Confidence 56788899999999988776655444344 555554
No 54
>PRK01919 tatB sec-independent translocase; Provisional
Probab=31.07 E-value=2.1e+02 Score=20.85 Aligned_cols=26 Identities=12% Similarity=0.046 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111 35 TSDLRNKIQALKSLTIDIGTEVKYQN 60 (87)
Q Consensus 35 ld~L~~kV~~LK~lsi~Ig~Ev~~Qn 60 (87)
...++.-|..+|....++.+|++.+-
T Consensus 29 aRtlGk~i~k~Rr~~~d~K~ev~~E~ 54 (169)
T PRK01919 29 ARTAGALFGRAQRYINDVKAEVSREI 54 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554443
No 55
>KOG0809|consensus
Probab=30.92 E-value=1.2e+02 Score=24.19 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhcc
Q psy7111 32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSF 86 (87)
Q Consensus 32 D~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~ 86 (87)
++.+-.|...|.-|-+|-.+++.=|-+|.. ++|-++--++.|...+..+.+-|.
T Consensus 217 E~EV~ql~~sI~dL~~if~DL~~lVvdQGt-vvDRIDyNvEqt~~~v~~a~keL~ 270 (305)
T KOG0809|consen 217 EKEVTQLVESIYDLNQIFKDLSALVVDQGT-VVDRIDYNVEQTQVRVEDALKELH 270 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhheecchhhhhhhHHhHHHHHH
Confidence 456788999999999999999999999999 999999999999999998887654
No 56
>PTZ00159 60S ribosomal protein L32; Provisional
Probab=30.88 E-value=25 Score=24.64 Aligned_cols=16 Identities=44% Similarity=0.804 Sum_probs=13.4
Q ss_pred CchhhhhhccCCCCCC
Q psy7111 1 MDNRMRRQHAGNYYEP 16 (87)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (87)
||||+||.+-|.+--|
T Consensus 39 iDnkvRrr~kG~~~mp 54 (133)
T PTZ00159 39 IDNRVRRRFKGTRLMP 54 (133)
T ss_pred cccchhccccCccCCC
Confidence 7999999998877655
No 57
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=30.84 E-value=2.2e+02 Score=22.44 Aligned_cols=47 Identities=17% Similarity=0.374 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhh
Q psy7111 37 DLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMAR 84 (87)
Q Consensus 37 ~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~R 84 (87)
..+..+..|...-..|..+++.-.. +|..+...|..--..+...++.
T Consensus 333 ~~~~~l~~le~~q~~l~~~l~~~~~-~L~~ve~~~~~N~~~i~~n~~~ 379 (388)
T PF04912_consen 333 EFSQTLSELESQQSDLQSQLKKWEE-LLNKVEEKFKENMETIEKNVKK 379 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566667777777777 7777777776666665555544
No 58
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=30.80 E-value=31 Score=26.25 Aligned_cols=16 Identities=19% Similarity=-0.006 Sum_probs=13.5
Q ss_pred CchhhhhhccCCCCCC
Q psy7111 1 MDNRMRRQHAGNYYEP 16 (87)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (87)
||||+||.+-|.+--|
T Consensus 140 idnk~Rr~~kg~~~mp 155 (232)
T PRK12766 140 GLSKQRRGIKGKGDTV 155 (232)
T ss_pred CccchhcccCCCCCCC
Confidence 7999999998877655
No 59
>PRK04098 sec-independent translocase; Provisional
Probab=29.16 E-value=2.2e+02 Score=20.47 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Q psy7111 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFD 72 (87)
Q Consensus 34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd 72 (87)
.+-.++.-|+.+|....+..++++..-. ++++...+.
T Consensus 28 ~~r~lGk~ir~~K~~~~~~k~~l~~Ei~--~~elk~e~~ 64 (158)
T PRK04098 28 AMVDIAKFFKAVKKTINDAKSTLDKEIN--IEEIKEEAL 64 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence 4455666666666666666666655554 444444333
No 60
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=29.13 E-value=1.7e+02 Score=21.45 Aligned_cols=51 Identities=10% Similarity=0.180 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS 85 (87)
Q Consensus 34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl 85 (87)
.+..+..++.....-......|+..-+. =|..|.+.++++..+|..+..|+
T Consensus 16 ~~~~~~~~l~~~~~~~~~aE~e~~~l~r-ri~~lE~~le~~eerL~~~~~kL 66 (237)
T PF00261_consen 16 RLEEAEEKLKEAEKRAEKAEAEVASLQR-RIQLLEEELERAEERLEEATEKL 66 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556666666666677888899999998 89999999999999999888775
No 61
>PRK08562 rpl32e 50S ribosomal protein L32e; Validated
Probab=28.64 E-value=30 Score=24.05 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.0
Q ss_pred CchhhhhhccCCCCCC
Q psy7111 1 MDNRMRRQHAGNYYEP 16 (87)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (87)
||||+||.+-|.+--|
T Consensus 41 iDnkvRrr~kg~~~mp 56 (125)
T PRK08562 41 LDSKMRLKLKGKPAIV 56 (125)
T ss_pred cccchhccccCCCCCC
Confidence 7999999988776555
No 62
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=28.25 E-value=1.1e+02 Score=21.74 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=31.6
Q ss_pred chHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchh
Q psy7111 25 DAIHQENE-----QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLN 79 (87)
Q Consensus 25 ~~le~QND-----~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~ 79 (87)
+.++||-| ...+.|..+..+|+.++..+ ||. |+++....++..+.+.
T Consensus 39 deldEEfD~~ps~~~~~~lr~Rydrlr~va~rv------Q~v--lgd~At~gERl~alls 90 (156)
T PF08372_consen 39 DELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRV------QNV--LGDVATQGERLQALLS 90 (156)
T ss_pred chhhhhhcccccccccHHHHHHHHHHHHHHHHH------HHH--HHHHHHHHHHHHHhhc
Confidence 44555543 24567888999999999876 444 7777777776665543
No 63
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=27.91 E-value=42 Score=24.25 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=14.0
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNE 61 (87)
Q Consensus 25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~ 61 (87)
-.||++.|+. +.|...|+|||.=.-++..|+.-|.+
T Consensus 17 alLE~ELdEK-E~L~~~~QRLkDE~RDLKqEl~V~ek 52 (166)
T PF04880_consen 17 ALLESELDEK-ENLREEVQRLKDELRDLKQELIVQEK 52 (166)
T ss_dssp HHHHHHHHHH-HHHHHCH-------------------
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688898764 89999999999999999999855555
No 64
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.46 E-value=2.5e+02 Score=23.61 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=20.6
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKY 58 (87)
Q Consensus 25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~ 58 (87)
+.++.||+.+..+-..--.+...|...|.+.|..
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~ 109 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQQIQQAVQS 109 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 5566777666666555555555566666665543
No 65
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=27.28 E-value=1.6e+02 Score=18.30 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111 32 EQLTSDLRNKIQALKSLTIDIGTEV 56 (87)
Q Consensus 32 D~~ld~L~~kV~~LK~lsi~Ig~Ev 56 (87)
...|..+...|..|+.+-..++...
T Consensus 14 ~~~I~~i~~~v~~l~~l~~~~l~~~ 38 (117)
T smart00503 14 RANIQKISQNVAELQKLHEELLTPP 38 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3455666666666666666655443
No 66
>KOG3208|consensus
Probab=27.25 E-value=2.8e+02 Score=21.29 Aligned_cols=65 Identities=12% Similarity=0.198 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchh
Q psy7111 12 NYYEPVPNQFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLN 79 (87)
Q Consensus 12 ~~~~~~~~~~~~~~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~ 79 (87)
+.|+.+|+-.++ +++..|.+ .++.=..-|..+=+.+++=.+-...|+. +|..+++.|-.+..++-
T Consensus 130 ~~~~~~~~~~~~-e~~lkE~~-~in~s~~~vde~Is~A~aTre~l~~Qrs-~l~~i~~k~~~~a~r~P 194 (231)
T KOG3208|consen 130 SSYPSASGFNRG-EMYLKEHD-HINNSIRLVDELISQAQATRENLHSQRS-VLGGINNKVNNIANRFP 194 (231)
T ss_pred ccCCccCCCchH-HHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHhcc
Confidence 666666665533 66666655 6677777788888889999999999999 88888887777665543
No 67
>PRK10604 sensor protein RstB; Provisional
Probab=26.98 E-value=2e+02 Score=22.22 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=33.7
Q ss_pred hhhccCCCCCCCCCCCCC-cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111 6 RRQHAGNYYEPVPNQFDG-GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKY 58 (87)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~ 58 (87)
++-+.|+.-.+.+....+ ...+...-+...+.+...+...|.+...|.+|++.
T Consensus 172 ~~~~~g~~~~~~~~~~~~el~~L~~~fn~m~~~l~~~~~~~~~l~~~vsHeLrt 225 (433)
T PRK10604 172 QRLGDGHLAERIHFDEGSSLERLGVAFNQMADNINALIASKKQLIDGIAHELRT 225 (433)
T ss_pred HHHhcCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcC
Confidence 344455555554443322 25566666677778888888888888888887763
No 68
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=26.17 E-value=1.7e+02 Score=18.19 Aligned_cols=25 Identities=8% Similarity=0.194 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111 34 LTSDLRNKIQALKSLTIDIGTEVKY 58 (87)
Q Consensus 34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~ 58 (87)
.+++|...|+.|+.++..+--++-+
T Consensus 3 d~~eLk~evkKL~~~A~~~kmdLHD 27 (66)
T PF05082_consen 3 DIEELKKEVKKLNRKATQAKMDLHD 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999998887766543
No 69
>PF01655 Ribosomal_L32e: Ribosomal protein L32; InterPro: IPR001515 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The L32e family consists of proteins that have 135 to 240 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3O58_b 3IZS_h 1S1I 3O5H_b 2ZKR_y 1Q7Y_Z 1VQ7_Y 3CCQ_Y 3CCV_Y 3CC7_Y ....
Probab=25.82 E-value=27 Score=23.65 Aligned_cols=16 Identities=38% Similarity=0.742 Sum_probs=9.3
Q ss_pred CchhhhhhccCCCCCC
Q psy7111 1 MDNRMRRQHAGNYYEP 16 (87)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (87)
||||+||.+-|.+--|
T Consensus 26 iDnk~Rrr~kG~~~mp 41 (110)
T PF01655_consen 26 IDNKVRRRFKGKPLMP 41 (110)
T ss_dssp SS-TCCHT-TTS---S
T ss_pred ccCcceeeecCccCcc
Confidence 7999999988766544
No 70
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=25.80 E-value=88 Score=22.02 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=18.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q psy7111 28 HQENEQLTSDLRNKIQALKSLT 49 (87)
Q Consensus 28 e~QND~~ld~L~~kV~~LK~ls 49 (87)
..+-|.+|+.|..|+..||.|=
T Consensus 108 r~~ID~eIe~Lq~Ki~~LKeiR 129 (145)
T PF12548_consen 108 RLHIDHEIETLQDKIKNLKEIR 129 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466889999999999999874
No 71
>COG1717 RPL32 Ribosomal protein L32E [Translation, ribosomal structure and biogenesis]
Probab=25.46 E-value=1.5e+02 Score=20.92 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=12.4
Q ss_pred CchhhhhhccCCCCCC
Q psy7111 1 MDNRMRRQHAGNYYEP 16 (87)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (87)
+|++|||..-|.|-.|
T Consensus 46 ~dsK~Rr~~kg~p~~v 61 (133)
T COG1717 46 IDSKMRRKLKGKPPMV 61 (133)
T ss_pred chHHHHHHhcCCCCCc
Confidence 6899999987776444
No 72
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=25.33 E-value=1.8e+02 Score=18.18 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111 48 LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS 85 (87)
Q Consensus 48 lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl 85 (87)
-+..=-+++.+|+. -|..++++++..++.|+.+.+-+
T Consensus 23 ~s~~t~~~L~~Ss~-~L~~~~~e~~~~~~~l~~s~~ll 59 (92)
T PF03908_consen 23 RSELTLQTLEESSA-TLRSTNDEYDGQSSLLKKSRKLL 59 (92)
T ss_pred HHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555678888999 99999999999999888876654
No 73
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=24.92 E-value=1.8e+02 Score=17.96 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=4.0
Q ss_pred HHhhHhHHHH
Q psy7111 63 LLRGMDDDFD 72 (87)
Q Consensus 63 lLd~l~~~fd 72 (87)
||+.++....
T Consensus 62 ll~~l~~~~~ 71 (127)
T smart00502 62 LLEDLEEQKE 71 (127)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 74
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=24.33 E-value=2.4e+02 Score=22.17 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHh
Q psy7111 36 SDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (87)
Q Consensus 36 d~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t 81 (87)
+-+...|..+-.++..||.+|.+|.. ++. ..|...+..|..+
T Consensus 51 ~~i~~~l~~f~~~S~~igg~V~~~a~-~v~---~aF~~qr~~L~~a 92 (312)
T PF01213_consen 51 ELINGPLKPFVELSKKIGGDVAEQAQ-LVK---KAFQAQRKFLLVA 92 (312)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHH-HHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH-HHH---HHHHHHHHHHHHH
Confidence 45789999999999999999999999 654 3566655555444
No 75
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=24.17 E-value=3.9e+02 Score=23.58 Aligned_cols=18 Identities=33% Similarity=0.704 Sum_probs=12.8
Q ss_pred chhhhhhccCCCCCCCCC
Q psy7111 2 DNRMRRQHAGNYYEPVPN 19 (87)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (87)
|++|.-...+..|.|+|.
T Consensus 236 ~~~~~~~~~~~~~~p~~~ 253 (717)
T PF09730_consen 236 DNRMSTPRKSESFSPAPS 253 (717)
T ss_pred ccccCCCCCCCCCCCCCc
Confidence 556664556788888887
No 76
>PF14293 YWFCY: YWFCY protein
Probab=23.96 E-value=1.1e+02 Score=18.75 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7111 32 EQLTSDLRNKIQALKSLTIDI 52 (87)
Q Consensus 32 D~~ld~L~~kV~~LK~lsi~I 52 (87)
++.+.+|.+.+...+.+|+-+
T Consensus 3 eddlr~L~KImdf~R~iSI~~ 23 (61)
T PF14293_consen 3 EDDLRALRKIMDFMRAISILF 23 (61)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999865
No 77
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=22.69 E-value=2.6e+02 Score=19.17 Aligned_cols=51 Identities=8% Similarity=0.157 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111 34 LTSDLRNKIQALKSLTIDIGT---EVKYQNEHLLRGMDDDFDRTGGFLNNSMARS 85 (87)
Q Consensus 34 ~ld~L~~kV~~LK~lsi~Ig~---Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl 85 (87)
.|+.+...+...|.....-.. .++.=+. =+..|...++.+...|+.|..++
T Consensus 50 eld~~~~~l~~~k~~lee~~~~~~~~E~l~r-riq~LEeele~ae~~L~e~~ekl 103 (143)
T PF12718_consen 50 ELDKLEEQLKEAKEKLEESEKRKSNAEQLNR-RIQLLEEELEEAEKKLKETTEKL 103 (143)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554433332 2333344 46777777888777777776654
No 78
>PF07326 DUF1466: Protein of unknown function (DUF1466); InterPro: IPR009932 This family consists of several hypothetical mammalian proteins of around 240 residues in length.
Probab=22.66 E-value=97 Score=23.73 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111 29 QENEQLTSDLRNKIQALKSLTIDIGTEV 56 (87)
Q Consensus 29 ~QND~~ld~L~~kV~~LK~lsi~Ig~Ev 56 (87)
+|-|..|+-++.=|+.||+|+....+-|
T Consensus 197 ~e~D~DLE~V~aGI~~Lk~LSq~~DdaI 224 (233)
T PF07326_consen 197 SEFDSDLEPVSAGIQQLKHLSQEFDDAI 224 (233)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999998776554
No 79
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=22.40 E-value=2.7e+02 Score=21.25 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccc
Q psy7111 40 NKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGF 77 (87)
Q Consensus 40 ~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~ 77 (87)
..+..+...+..|.+++..=-. -++.++..++++...
T Consensus 233 ~na~~I~~~~~~l~~~~~~~~~-~~~~l~k~l~~a~~~ 269 (304)
T PF02646_consen 233 KNAEEIAELAGKLYDRFGKFVE-HLEKLGKSLDKAVKS 269 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3333344444444444444333 334444444443333
No 80
>PRK15396 murein lipoprotein; Provisional
Probab=22.32 E-value=2.2e+02 Score=18.07 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy7111 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDD 69 (87)
Q Consensus 34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~ 69 (87)
.++.|...|..++.=.....+|+..=|. =||++-.
T Consensus 40 kvdql~~dv~~~~~~~~~a~~eA~raN~-RlDn~~~ 74 (78)
T PRK15396 40 KVDQLSNDVNAMRSDVQAAKDDAARANQ-RLDNQAT 74 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3444555555555555555567777777 7777644
No 81
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.23 E-value=1.9e+02 Score=17.34 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111 34 LTSDLRNKIQALKSLTIDIGTEVKYQNE 61 (87)
Q Consensus 34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~ 61 (87)
.+..++..|..+|.=-..|.++++.=++
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665555444
No 82
>KOG1853|consensus
Probab=21.96 E-value=2.3e+02 Score=22.48 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=28.1
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111 26 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNE 61 (87)
Q Consensus 26 ~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~ 61 (87)
.||++.|+. +.|...|++||.=+.++..|+.-+.+
T Consensus 151 fLESELdEk-e~llesvqRLkdEardlrqelavr~k 185 (333)
T KOG1853|consen 151 FLESELDEK-EVLLESVQRLKDEARDLRQELAVRTK 185 (333)
T ss_pred HHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777755 77888999999999999999876654
No 83
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=21.86 E-value=2.8e+02 Score=19.23 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=45.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhcc
Q psy7111 27 IHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSF 86 (87)
Q Consensus 27 le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~ 86 (87)
++.+-+.=++....-|..+..-...|..|++.-.. .-..+.+..++...-|..+|...+
T Consensus 34 i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~-rkk~~e~~~~~Lk~yL~~~m~~~g 92 (162)
T PF05565_consen 34 IEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQE-RKKSIENRIDRLKEYLLDAMEAAG 92 (162)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44455556677777777888888888999988888 888888888888888888876643
No 84
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=21.62 E-value=2.1e+02 Score=17.70 Aligned_cols=51 Identities=14% Similarity=0.296 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh----HHHHhhccchhHhhhhc
Q psy7111 35 TSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMD----DDFDRTGGFLNNSMARS 85 (87)
Q Consensus 35 ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~----~~fd~t~~~L~~t~~Rl 85 (87)
...++..+...+.+..+|..-++.+-...|..|+ ++||-....|..|-.|+
T Consensus 12 ~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl 66 (79)
T PF04380_consen 12 AKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKL 66 (79)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3344444454555555555555555554555554 56666666666554443
No 85
>PRK00404 tatB sec-independent translocase; Provisional
Probab=21.57 E-value=3e+02 Score=19.42 Aligned_cols=39 Identities=15% Similarity=0.020 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHh
Q psy7111 33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDR 73 (87)
Q Consensus 33 ~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~ 73 (87)
+.+..|+..|..+|.....+.+|+...-. ++++...++.
T Consensus 27 ~laR~lG~~i~~~rr~~~~~k~ei~~E~~--~~elr~~l~~ 65 (141)
T PRK00404 27 GAARTAGLWIGRLKRSFNAIKQEVEREIG--ADEIRRQLHN 65 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC--HHHHHHHHHH
Confidence 34567777788888888888888888777 5777666665
No 86
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=21.38 E-value=2.4e+02 Score=18.74 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=24.0
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111 25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVK 57 (87)
Q Consensus 25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~ 57 (87)
=.|-++..+.-+.|..+-..||..+..+..+|.
T Consensus 63 v~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~ 95 (97)
T PF15136_consen 63 VAMNERLQQARDQLKKKCEELRQAGEELERDIE 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666677788888888888888877764
No 87
>KOG2991|consensus
Probab=21.06 E-value=2.4e+02 Score=22.44 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=38.8
Q ss_pred chHHHhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhcc
Q psy7111 25 DAIHQENEQ--------LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGG 76 (87)
Q Consensus 25 ~~le~QND~--------~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~ 76 (87)
..|.++|++ .+-.|..++.++|.-+..+..--++=+. .+..|++++++...
T Consensus 220 R~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~d-fm~eLdedVEgmqs 278 (330)
T KOG2991|consen 220 RTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYD-FMEELDEDVEGMQS 278 (330)
T ss_pred HHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHH-HHHHHHHHHhcchh
Confidence 667777765 3567888899999988777776666677 77888888887654
No 88
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=21.00 E-value=3.1e+02 Score=19.39 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchh
Q psy7111 34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLN 79 (87)
Q Consensus 34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~ 79 (87)
..+.+...+..|..-...+..++..--. .|..+.+.+..-...|+
T Consensus 104 ~~~~~~~~i~~L~~~i~~~q~~~~~~i~-~L~~f~~~l~~D~~~l~ 148 (184)
T PF05791_consen 104 DKEDLKEIIEDLQDQIQKNQDKVQALIN-ELNDFKDKLQKDSRNLK 148 (184)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666555 55555555544444333
No 89
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.00 E-value=3e+02 Score=19.10 Aligned_cols=21 Identities=10% Similarity=0.259 Sum_probs=10.6
Q ss_pred hhHhHHHHhhccchhHhhhhc
Q psy7111 65 RGMDDDFDRTGGFLNNSMARS 85 (87)
Q Consensus 65 d~l~~~fd~t~~~L~~t~~Rl 85 (87)
..+.+.+..+...|..+..+|
T Consensus 141 ~~~~~~~~~~~~~l~~~lekL 161 (204)
T PF04740_consen 141 SSFIDSLEKAKKKLQETLEKL 161 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555443
Done!