Query         psy7111
Match_columns 87
No_of_seqs    102 out of 349
Neff          5.1 
Searched_HMMs 29240
Date          Fri Aug 16 18:27:39 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy7111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7111hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1n7s_D SNAP-25A; neuronal snar  99.7 1.8E-17   6E-22  101.0   6.5   62   25-87      2-63  (66)
  2 1gl2_D Syntaxin 8, vesicle tra  99.7 1.7E-17 5.8E-22  100.8   5.9   61   25-87      2-62  (65)
  3 1sfc_D Protein (SNAP-25B), pro  99.7 1.4E-16 4.7E-21  102.1   6.9   62   24-86     20-81  (87)
  4 2nps_D Syntaxin-6; vesicle fus  99.7 5.4E-17 1.8E-21  102.8   3.9   61   25-87     12-72  (82)
  5 1l4a_D S-SNAP25 fusion protein  99.5 8.3E-15 2.8E-19   94.1   6.1   62   25-87     22-83  (87)
  6 3b5n_D Protein transport prote  99.5 2.8E-13 9.5E-18   82.9   7.3   62   25-87      2-63  (64)
  7 3hd7_B Syntaxin-1A; membrane p  96.1   0.017   6E-07   37.4   6.1   61   24-86     13-73  (109)
  8 1jth_B Syntaxin 1A; coiled-coi  93.5     0.3   1E-05   29.4   6.2   58   26-85      4-61  (77)
  9 2nps_B Syntaxin 13, vesicle-as  92.9    0.37 1.3E-05   28.7   5.8   53   32-85      5-57  (71)
 10 3b5n_B Protein SSO1; snare com  92.8    0.47 1.6E-05   28.1   6.2   58   26-85      4-61  (69)
 11 1gl2_B Syntaxin 7; membrane pr  92.8    0.37 1.3E-05   28.3   5.6   57   27-85      4-60  (65)
 12 1sfc_B Protein (syntaxin 1A),   92.2    0.57 1.9E-05   28.7   6.2   59   25-85     14-72  (83)
 13 1n7s_B Syntaxin 1A; neuronal s  91.3    0.87   3E-05   26.8   6.2   59   25-85      5-63  (68)
 14 3efg_A Protein SLYX homolog; x  79.0     7.2 0.00025   23.8   5.8   50   30-80     11-60  (78)
 15 3onj_A T-snare VTI1; helix, HA  65.9      21 0.00071   22.1   5.8   49   25-74      4-60  (97)
 16 2xze_Q Charged multivesicular   62.5     6.8 0.00023   21.5   2.6   23   25-47     18-40  (40)
 17 1jcd_A Major outer membrane li  61.6      20 0.00068   20.4   5.6   32   34-66     19-50  (52)
 18 2qyw_A Vesicle transport throu  61.3      27 0.00093   21.8   7.2   57   25-82     18-83  (102)
 19 2zkr_y 60S ribosomal protein L  60.6     2.6 8.7E-05   28.7   0.8   16    1-16     41-56  (135)
 20 1dn1_B Syntaxin 1A, syntaxin b  58.6     9.1 0.00031   27.6   3.5   53   32-85    199-251 (267)
 21 1vcs_A Vesicle transport throu  57.6      32  0.0011   21.4   7.1   58   24-82      7-72  (102)
 22 3thf_A Protein shroom; coiled-  57.4      44  0.0015   23.8   6.8   43   25-68     11-53  (190)
 23 3c98_B Syntaxin-1A; protein co  57.2      11 0.00036   25.7   3.5   49   32-81    211-259 (279)
 24 1ic2_A Tropomyosin alpha chain  56.6      29   0.001   20.7   6.4   51   34-85     21-71  (81)
 25 1ezj_A Nucleocapsid phosphopro  56.0      34  0.0012   22.4   5.6   37   29-66     69-105 (115)
 26 1nhl_A Synaptosomal-associated  55.2      21 0.00071   19.9   4.0   41   44-85     11-51  (54)
 27 2xhe_B Syntaxin1; exocytosis,   54.6     4.7 0.00016   29.0   1.4   59   26-86    211-269 (279)
 28 3u1c_A Tropomyosin alpha-1 cha  54.2      37  0.0013   21.2   6.4   50   34-84     24-73  (101)
 29 4ew8_A Sensor protein DIVL; si  53.5      41  0.0014   22.3   6.0   37   25-61     20-56  (268)
 30 1jcd_A Major outer membrane li  52.0      31  0.0011   19.6   5.6   16   32-47     10-25  (52)
 31 1l4a_A Synaptobrevin; snare, s  51.5      22 0.00074   21.3   3.9   56   24-81     17-72  (80)
 32 3ra3_A P1C; coiled coil domain  50.1      19 0.00066   17.9   2.9   19   25-47      3-21  (28)
 33 2pjw_V Vacuolar protein sortin  50.0      44  0.0015   20.9   5.3   42   32-75     32-74  (91)
 34 3u59_A Tropomyosin beta chain;  40.0      64  0.0022   19.9   6.4   49   34-83     24-72  (101)
 35 2nps_A VAMP-4, vesicle-associa  38.4      59   0.002   19.0   7.1   61   20-82      6-66  (74)
 36 2kwh_A RAla-binding protein 1;  38.0      21 0.00073   20.8   2.2   22   50-72      6-27  (56)
 37 1s0p_A CAP, adenylyl cyclase-a  35.8      76  0.0026   21.9   5.2   43   36-82      7-49  (176)
 38 2dnx_A Syntaxin-12; snare, HAB  33.5      46  0.0016   21.4   3.6   33   22-54     10-42  (130)
 39 3m48_A General control protein  33.4      55  0.0019   17.1   3.3   24   38-61      5-28  (33)
 40 1gd2_E Transcription factor PA  32.6      79  0.0027   18.7   5.7   41   29-70     25-65  (70)
 41 1kd8_B GABH BLL, GCN4 acid bas  32.1      61  0.0021   17.2   4.6   28   34-61      2-29  (36)
 42 2l3n_A DNA-binding protein RAP  31.6      47  0.0016   21.0   3.2   38   47-85     13-50  (104)
 43 2bni_A General control protein  29.4      67  0.0023   16.9   3.5   27   35-61      3-29  (34)
 44 3j21_b PFEL32, 50S ribosomal p  29.4      22 0.00074   23.9   1.4   16    1-16     46-61  (130)
 45 1uo4_A General control protein  29.2      68  0.0023   16.9   3.5   26   36-61      4-29  (34)
 46 3iz5_h 60S ribosomal protein L  28.9      22 0.00077   23.9   1.4   16    1-16     39-54  (133)
 47 1n7s_C SNAP-25A; neuronal snar  28.7      97  0.0033   18.5   6.2   39   46-85     36-74  (79)
 48 4a17_X RPL32, 60S ribosomal pr  28.0      23 0.00079   23.9   1.3   16    1-16     40-55  (134)
 49 1pwb_A SP-D, PSP-D, pulmonary   27.0      84  0.0029   20.2   4.0   15   33-47     38-52  (177)
 50 3tq2_A KE1; parallel three hel  26.4      50  0.0017   17.3   2.2   14   35-48      3-16  (36)
 51 3a7p_A Autophagy protein 16; c  26.0 1.6E+02  0.0055   20.1   6.3   47   33-80     68-114 (152)
 52 3u5e_e 60S ribosomal protein L  25.5      23  0.0008   23.7   1.0   16    1-16     38-53  (130)
 53 1sfc_A VAMP 2, protein (synapt  24.9 1.3E+02  0.0043   18.6   7.3   55   25-81     33-87  (96)
 54 1gl2_A Endobrevin; membrane pr  24.1 1.1E+02  0.0036   17.4   6.4   55   23-79     10-64  (65)
 55 2kog_A Vesicle-associated memb  23.9     4.2 0.00014   26.6  -2.9   13   35-47     35-47  (119)
 56 1a93_B MAX protein, coiled coi  23.8      48  0.0016   17.4   1.8   12   54-66     17-28  (34)
 57 2js5_A Uncharacterized protein  23.1 1.1E+02  0.0037   18.4   3.6   25   34-58      4-28  (71)
 58 3zcc_A HAMP, osmolarity sensor  23.0 1.1E+02  0.0036   17.0   6.8   55    7-61     20-76  (114)
 59 3a2a_A Voltage-gated hydrogen   22.7 1.2E+02  0.0042   17.6   5.4   30   36-66     21-50  (58)
 60 3na7_A HP0958; flagellar bioge  22.1 2.1E+02  0.0071   20.0   6.4   51   33-84     32-82  (256)
 61 1gl2_C VTI1B, vesicle transpor  22.0 1.2E+02  0.0041   17.2   6.4   51   34-85     10-60  (65)
 62 3oja_A Leucine-rich immune mol  21.9 2.5E+02  0.0086   20.9   6.9   31   53-84    448-478 (487)
 63 2kxh_B Peptide of FAR upstream  20.9      28 0.00095   18.0   0.5   19   37-55      9-27  (31)
 64 1buu_A Protein (mannose-bindin  20.6      95  0.0032   19.8   3.3   13   35-47     25-37  (168)

No 1  
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.71  E-value=1.8e-17  Score=100.97  Aligned_cols=62  Identities=18%  Similarity=0.296  Sum_probs=59.1

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH   87 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r   87 (87)
                      +.+|+|+|+.|+.|+.+|++||++|++||+||+.||. +||.|+++||++..+|+.+.+|+++
T Consensus         2 d~~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~-~Ld~l~~~~d~~~~~l~~~~~rl~~   63 (66)
T 1n7s_D            2 SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNR-QIDRIMEKADSNKTRIDEANQRATK   63 (66)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999 9999999999999999999999863


No 2  
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.70  E-value=1.7e-17  Score=100.77  Aligned_cols=61  Identities=20%  Similarity=0.273  Sum_probs=52.7

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH   87 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r   87 (87)
                      ++|++| |+.|+.|+.+|++||++|++||+||+.||. +||+|+++||++..+|+++++|+++
T Consensus         2 ~~~~eq-D~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~-lLd~l~~~~d~~~~~l~~~~~rl~~   62 (65)
T 1gl2_D            2 SHMQEQ-DAGLDALSSIISRQKQMGQEIGNELDEQNE-IIDDLANLVENTDEKLRTEARRVTL   62 (65)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             cHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666 679999999999999999999999999999 9999999999999999999999875


No 3  
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.67  E-value=1.4e-16  Score=102.10  Aligned_cols=62  Identities=19%  Similarity=0.317  Sum_probs=59.5

Q ss_pred             cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhcc
Q psy7111          24 GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSF   86 (87)
Q Consensus        24 ~~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~   86 (87)
                      .+.+|+++|+.|+.|+..|++||++|++||+||+.||. +||.|+++||++..+|..+.+|++
T Consensus        20 ~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~-~Ld~i~~~~D~~~~rl~~~~~rl~   81 (87)
T 1sfc_D           20 NDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNR-QIDRIMEKADSNKTRIDEANQRAT   81 (87)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999 999999999999999999999886


No 4  
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.65  E-value=5.4e-17  Score=102.79  Aligned_cols=61  Identities=20%  Similarity=0.290  Sum_probs=52.7

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH   87 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r   87 (87)
                      +.+++| |+.|+.|+.+|.+||++|++||+||+.||. |||+|+++||++..+|+++++|+++
T Consensus        12 ~~~~eQ-D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~-lLd~l~~~~d~~~~~L~~~~~r~~~   72 (82)
T 2nps_D           12 NMGRMQ-DEQLELVSGSIGVLKNMSQRIGGELEEQAV-MLEDFSHELESTQSRLDNVMKKLAK   72 (82)
T ss_dssp             -------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777 568999999999999999999999999999 9999999999999999999999863


No 5  
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.54  E-value=8.3e-15  Score=94.09  Aligned_cols=62  Identities=18%  Similarity=0.330  Sum_probs=59.0

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH   87 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r   87 (87)
                      +.+|.+.|+.|+.|+..|++||++|.+||+||+.||. +||.+++.+|++..+|..+.+|+++
T Consensus        22 d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~-~LD~i~~~~D~~~~rl~~~n~r~~k   83 (87)
T 1l4a_D           22 DAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNR-QVDRIQQKAESNESRIDEANKKATK   83 (87)
T ss_dssp             SHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888999999999999999999999999999999 9999999999999999999998753


No 6  
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.45  E-value=2.8e-13  Score=82.90  Aligned_cols=62  Identities=16%  Similarity=0.216  Sum_probs=59.4

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhccC
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSFH   87 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~r   87 (87)
                      +.+|.|.|+.|++|+..|++||++|.+||+||+.||. +||.+....|++..+|..+.+||+|
T Consensus         2 d~~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~-~ldrI~~k~d~~d~ri~~~~~Rl~~   63 (64)
T 3b5n_D            2 SEMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQK-RLNNIEESTDDLDINLHMNTNRLAG   63 (64)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5688999999999999999999999999999999999 9999999999999999999999875


No 7  
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=96.10  E-value=0.017  Score=37.42  Aligned_cols=61  Identities=15%  Similarity=0.286  Sum_probs=53.7

Q ss_pred             cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhcc
Q psy7111          24 GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSF   86 (87)
Q Consensus        24 ~~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~   86 (87)
                      ...+++. ++.+..|...+.-|.++-.++...|.+|.. +||.++..++.+...+..+...+.
T Consensus        13 l~~i~eR-~~eI~~Ie~~I~eL~~iF~dla~lV~eQge-~Id~Ie~nv~~a~~~v~~g~~eL~   73 (109)
T 3hd7_B           13 LSEIETR-HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVSDTK   73 (109)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667777 457899999999999999999999999999 999999999999998888776553


No 8  
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=93.47  E-value=0.3  Score=29.44  Aligned_cols=58  Identities=16%  Similarity=0.342  Sum_probs=49.7

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          26 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        26 ~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      .+++. .+.+..|...|.-|.+|-.++..=|.+|.. +||.++..++.|...+..+..-+
T Consensus         4 ~i~eR-~~ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~~L   61 (77)
T 1jth_B            4 EIETR-HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVSDT   61 (77)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555 457899999999999999999999999999 99999999999888877765544


No 9  
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=92.89  E-value=0.37  Score=28.67  Aligned_cols=53  Identities=11%  Similarity=0.245  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        32 D~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      .+.+..|...|.-|.+|-.++..=|.+|-. +||.++..++.|...+..+..-|
T Consensus         5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~eL   57 (71)
T 2nps_B            5 ETAIQQLEADILDVNQIFKDLAMMIHDQGD-LIDSIEANVESSEVHVERASDQL   57 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            357889999999999999999999999999 99999999999988887766544


No 10 
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=92.76  E-value=0.47  Score=28.09  Aligned_cols=58  Identities=16%  Similarity=0.164  Sum_probs=50.2

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          26 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        26 ~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      .+++. .+.+..|...|.-|.+|-.++..=|.+|.. +||.++..++.|...+..+...+
T Consensus         4 ~i~eR-~~ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~~L   61 (69)
T 3b5n_B            4 EVQAR-HQELLKLEKSMAELTQLFNDMEELVIEQQE-NVDVIDKNVEDAQLDVEQGVGHT   61 (69)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455 457899999999999999999999999999 99999999999998887776554


No 11 
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=92.76  E-value=0.37  Score=28.30  Aligned_cols=57  Identities=12%  Similarity=0.308  Sum_probs=49.3

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          27 IHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        27 le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      +++. ...+..|...|.-|.+|-.++..=|.+|-. +||.++..++.|...+..+..-|
T Consensus         4 i~eR-~~~i~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~eL   60 (65)
T 1gl2_B            4 MHER-ESSIRQLEADIMDINEIFKDLGMMIHEQGD-VIDSIEANVESAEVHVQQANQQL   60 (65)
T ss_dssp             -CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344 357899999999999999999999999999 99999999999998888776654


No 12 
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=92.15  E-value=0.57  Score=28.67  Aligned_cols=59  Identities=15%  Similarity=0.339  Sum_probs=51.1

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      ..+++. .+.+..|...|.-|.+|-.++..=|.+|.. +||.++..++.+...+..+...|
T Consensus        14 ~~i~eR-~~ei~~ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~eL   72 (83)
T 1sfc_B           14 SEIETR-HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVSDT   72 (83)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666 457899999999999999999999999999 99999999999988887776544


No 13 
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=91.34  E-value=0.87  Score=26.76  Aligned_cols=59  Identities=15%  Similarity=0.339  Sum_probs=51.2

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      ..+++. .+.+..|...|.-|.+|-.++..=|.+|.. +||.++..++.|...+..+..-+
T Consensus         5 ~~i~eR-~~ei~~Ie~~i~eL~~iF~dla~lV~eQge-~id~Ie~nv~~a~~~v~~g~~~L   63 (68)
T 1n7s_B            5 SEIETR-HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVSDT   63 (68)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555 457899999999999999999999999999 99999999999998888776554


No 14 
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=79.02  E-value=7.2  Score=23.77  Aligned_cols=50  Identities=8%  Similarity=-0.042  Sum_probs=42.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhH
Q psy7111          30 ENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN   80 (87)
Q Consensus        30 QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~   80 (87)
                      +.++++..|..++.-+-..-..+.+.|-.|.. .|+.|...+.....+|+.
T Consensus        11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~-~Id~L~~ql~~L~~rl~~   60 (78)
T 3efg_A           11 ELEARLVELETRLSFQEQALTELSEALADARL-TGARNAELIRHLLEDLGK   60 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            44568899999999999999999999999999 999999888887777654


No 15 
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=65.90  E-value=21  Score=22.12  Aligned_cols=49  Identities=10%  Similarity=0.100  Sum_probs=39.1

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhHhHHHHhh
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKS--------LTIDIGTEVKYQNEHLLRGMDDDFDRT   74 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~--------lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t   74 (87)
                      +.+|++-......+..++..+..        .-..|...+++=.. ||+.|.-.+-.+
T Consensus         4 ~~YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~e-ll~qMelE~~~~   60 (97)
T 3onj_A            4 ISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFD-LLDQMDVEVNNS   60 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence            45677777888888888888754        34678888888899 999999888777


No 16 
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=62.54  E-value=6.8  Score=21.47  Aligned_cols=23  Identities=17%  Similarity=0.378  Sum_probs=17.1

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHH
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKS   47 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~   47 (87)
                      ...+++.++.+++|.+++.+|++
T Consensus        18 ~~e~edeEedi~~MqsRLaALRS   40 (40)
T 2xze_Q           18 SEDEEEEEEALEAMQSRLATLRS   40 (40)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             chhhhhhHHHHHHHHHHHHHhcC
Confidence            33456656789999999998874


No 17 
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=61.65  E-value=20  Score=20.41  Aligned_cols=32  Identities=13%  Similarity=0.043  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7111          34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRG   66 (87)
Q Consensus        34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~   66 (87)
                      .++.|++.|..||.=.....+|+..=|. =||+
T Consensus        19 kVdqLssdV~al~~~v~~ak~eA~RAN~-RlDN   50 (52)
T 1jcd_A           19 KADQASNDANAARSDAQAAKDDAARANQ-RADN   50 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhc
Confidence            4444455555555444455555555555 4543


No 18 
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=61.33  E-value=27  Score=21.82  Aligned_cols=57  Identities=23%  Similarity=0.287  Sum_probs=44.5

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhh
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKS---------LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM   82 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~---------lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~   82 (87)
                      +.+|+|-......+..++..+..         .-..|...+++=.. ||+.|+-++-.+....+..+
T Consensus        18 e~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~e-Ll~qMelE~r~~p~s~R~~~   83 (102)
T 2qyw_A           18 EKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANE-TLAEMEEELRYAPLTFRNPM   83 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHH
Confidence            67888888899999999998854         44568888888899 99999888877665555443


No 19 
>2zkr_y 60S ribosomal protein L32; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=60.61  E-value=2.6  Score=28.73  Aligned_cols=16  Identities=44%  Similarity=0.831  Sum_probs=11.8

Q ss_pred             CchhhhhhccCCCCCC
Q psy7111           1 MDNRMRRQHAGNYYEP   16 (87)
Q Consensus         1 ~~~~~~~~~~~~~~~~   16 (87)
                      ||||+||.+-|.+--|
T Consensus        41 iDnrvRrrfkG~~~mp   56 (135)
T 2zkr_y           41 IDNRVRRRFKGQILMP   56 (135)
T ss_dssp             SSCTTTCC-CCSCCCS
T ss_pred             CcccceeeccCCCCCC
Confidence            7999999987765555


No 20 
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=58.62  E-value=9.1  Score=27.60  Aligned_cols=53  Identities=15%  Similarity=0.344  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        32 D~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      ...+..|...|.-|.+|-.++..=|.+|.. +||.+...++.|...+..+..-|
T Consensus       199 ~~~i~~ie~~i~el~~if~dla~lV~~Qg~-~id~Ie~nv~~a~~~v~~~~~~l  251 (267)
T 1dn1_B          199 HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERAVSDT  251 (267)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHCS-GGGCHHHHHHTCCCCCCCCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            356889999999999999999999999999 99999999999888776655444


No 21 
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=57.64  E-value=32  Score=21.45  Aligned_cols=58  Identities=19%  Similarity=0.287  Sum_probs=44.8

Q ss_pred             cchHHHhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhh
Q psy7111          24 GDAIHQENEQLTSDLRNKIQALKS--------LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM   82 (87)
Q Consensus        24 ~~~le~QND~~ld~L~~kV~~LK~--------lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~   82 (87)
                      ++.+|+|-......|..++..+..        .-..|...+++=.. ||+.|+-++-.+....+..+
T Consensus         7 Fe~YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~e-ll~qMelE~r~~p~~~R~~~   72 (102)
T 1vcs_A            7 GEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARE-LLEQMDLEVREIPPQSRGMY   72 (102)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSCTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHhHHHH
Confidence            366788888899999999998865        44568888888899 99999888777665554443


No 22 
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=57.36  E-value=44  Score=23.76  Aligned_cols=43  Identities=26%  Similarity=0.298  Sum_probs=34.7

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMD   68 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~   68 (87)
                      ..+.+--.++++.|+.|+..|+.-=..|.+|+..-+. +=..+.
T Consensus        11 ~~i~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~-lG~~ve   53 (190)
T 3thf_A           11 NLIKQKMDELIKHLNQKIVSLKREQQTISEECSANDR-LGQDLF   53 (190)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHH
Confidence            3456666789999999999999999999999988777 544444


No 23 
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=57.16  E-value=11  Score=25.74  Aligned_cols=49  Identities=16%  Similarity=0.345  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHh
Q psy7111          32 EQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS   81 (87)
Q Consensus        32 D~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t   81 (87)
                      ...+..+...|..+..+..+|..-+.+|.. .++.+...++.+......+
T Consensus       211 ~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~-~~~~I~~nv~~~~~~v~~~  259 (279)
T 3c98_B          211 HSEIIKLENSIRELHDMFMDMAMLVESQGE-MIDRIEYNVEHAVDYVERA  259 (279)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHCS-GGGCHHHHHHTCCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            357788899999999999999999999999 9999999999877655443


No 24 
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=56.60  E-value=29  Score=20.69  Aligned_cols=51  Identities=14%  Similarity=0.234  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      .++.+..++.....-......||..-+. =+-.+.+++|.+...|..+..+|
T Consensus        21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~k-Kiq~lE~eld~~ee~l~~a~~kL   71 (81)
T 1ic2_A           21 RAEQAEADKKAAEERSKQLEDELVALQK-KLKGTEDELDKYSESLKDAQEKL   71 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666666667777888999998888 89999999999999888877665


No 25 
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=56.03  E-value=34  Score=22.37  Aligned_cols=37  Identities=24%  Similarity=0.378  Sum_probs=30.7

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7111          29 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRG   66 (87)
Q Consensus        29 ~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~   66 (87)
                      ++|+..+.++.+.|..+|.+-...-+--++||. |+-.
T Consensus        69 ~en~~~L~QIQ~ei~s~rd~hkR~~E~QkEQ~S-L~~s  105 (115)
T 1ezj_A           69 DENKQLLKQIQESVESFRDIYKRFSEYQKEQNS-LLMS  105 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHH
Confidence            467888999999999999888888888888988 6543


No 26 
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=55.24  E-value=21  Score=19.94  Aligned_cols=41  Identities=15%  Similarity=0.141  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          44 ALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        44 ~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      --+.+++.+-.++..|-. -|+.....++....-|+.+-+-|
T Consensus        11 ese~~g~~Tl~~L~~QgE-ql~r~~~~ld~i~~~l~~a~k~L   51 (54)
T 1nhl_A           11 ESQDAGIKTITMLDEQKE-QLNRIEEGLDQINKDMRETEKTL   51 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHh-hHHHHHhHHHHHHhHHHHHHHHH
Confidence            345678888888999988 88888888888887777766544


No 27 
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=54.64  E-value=4.7  Score=29.03  Aligned_cols=59  Identities=14%  Similarity=0.285  Sum_probs=45.4

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhcc
Q psy7111          26 AIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARSF   86 (87)
Q Consensus        26 ~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl~   86 (87)
                      .+++. .+.+..|...|.-|.+|-.++..=|.+|.. +||.++..++.|...+..+..-|.
T Consensus       211 ~i~eR-~~eI~~Ie~~i~el~~if~dla~lV~~Qg~-~id~Ie~nv~~~~~~v~~~~~~l~  269 (279)
T 2xhe_B          211 EIRDR-HKDIQQLERSLLELHEMFTDMSTLVASQGE-MIDRIEFSVEQSHNYVKKATEQVV  269 (279)
T ss_dssp             TTTHH-HHHHHHHHHHHHHHHHHHHHHHTTTTTSCS-STTCHHHHHHTCCCCC--------
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444 457889999999999999999999999999 999999999999988887766553


No 28 
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=54.17  E-value=37  Score=21.17  Aligned_cols=50  Identities=14%  Similarity=0.100  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhh
Q psy7111          34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMAR   84 (87)
Q Consensus        34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~R   84 (87)
                      ..+.+..++..+..-......||..-+. =+-.+.+++|.+...|..+..+
T Consensus        24 rae~~e~~~k~~e~~~~~~E~Ei~sL~k-k~~~lE~eld~~ee~L~ea~~k   73 (101)
T 3u1c_A           24 RAEQAEADKKAAEERSKQLEDDIVQLEK-QLRVTEDSRDQVLEELHKSEDS   73 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777888888888999988777 7888899999888888776554


No 29 
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=53.50  E-value=41  Score=22.27  Aligned_cols=37  Identities=5%  Similarity=0.081  Sum_probs=25.2

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNE   61 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~   61 (87)
                      ..|+++..+....|.......+.+...|..|++.--.
T Consensus        20 ~~l~~~l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~   56 (268)
T 4ew8_A           20 HMLQSALADRSAALAEAERLKRDFVGNVSYELRTPLT   56 (268)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            7777777777788888888888888888888876554


No 30 
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=52.05  E-value=31  Score=19.61  Aligned_cols=16  Identities=6%  Similarity=-0.020  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy7111          32 EQLTSDLRNKIQALKS   47 (87)
Q Consensus        32 D~~ld~L~~kV~~LK~   47 (87)
                      ...++.|+.+|..|++
T Consensus        10 ss~V~~L~~kVdqLss   25 (52)
T 1jcd_A           10 SSDAQTANAKADQASN   25 (52)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4456677777777776


No 31 
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=51.51  E-value=22  Score=21.33  Aligned_cols=56  Identities=13%  Similarity=0.172  Sum_probs=35.4

Q ss_pred             cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHh
Q psy7111          24 GDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS   81 (87)
Q Consensus        24 ~~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t   81 (87)
                      ...+..|.++-..-|...|..+=+=+..|..=++....  |..-...|.+...+|++.
T Consensus        17 l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~--L~~~s~~F~k~A~~l~rk   72 (80)
T 1l4a_A           17 LQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA--LQAGASQFEASAGKLKRK   72 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTTTSTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            46677777777777777777777777766654444444  555556666666555543


No 32 
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=50.09  E-value=19  Score=17.95  Aligned_cols=19  Identities=53%  Similarity=0.691  Sum_probs=12.0

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHH
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKS   47 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~   47 (87)
                      +.+|=+||    .|..||..||+
T Consensus         3 dalefend----aleqkiaalkq   21 (28)
T 3ra3_A            3 DALEFEND----ALEQKIAALKQ   21 (28)
T ss_dssp             CHHHHHHH----HHHHHHHHHHH
T ss_pred             chHHhccH----HHHHHHHHHHH
Confidence            45666765    55666666665


No 33 
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=49.95  E-value=44  Score=20.89  Aligned_cols=42  Identities=17%  Similarity=0.231  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHhHHHHhhc
Q psy7111          32 EQLTSDLRNKIQALKS-LTIDIGTEVKYQNEHLLRGMDDDFDRTG   75 (87)
Q Consensus        32 D~~ld~L~~kV~~LK~-lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~   75 (87)
                      |..+.+|..+|..+|- |...|++-+..++.  |=+|++.|..+.
T Consensus        32 d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~--L~~mn~Kls~a~   74 (91)
T 2pjw_V           32 DSKLQNLAQRVFASKARLNYALNDKAQKYNT--LIEMNGKISEIM   74 (91)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            3478899999999984 89999999999998  667888877664


No 34 
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=40.04  E-value=64  Score=19.85  Aligned_cols=49  Identities=8%  Similarity=0.146  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhh
Q psy7111          34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMA   83 (87)
Q Consensus        34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~   83 (87)
                      ..+.+..++.....-......||..-+. =+-.+.+++|.+...|..+..
T Consensus        24 ~ae~~e~~~k~~e~~~~~~E~ei~sL~k-Kiq~lE~eld~~~e~l~~a~~   72 (101)
T 3u59_A           24 RAEQAEADKKQAEDRCKQLEEEQQGLQK-KLKGTEDEVEKYSESVKEAQE   72 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666666677777777777766 677777777777776665543


No 35 
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=38.37  E-value=59  Score=18.96  Aligned_cols=61  Identities=10%  Similarity=0.116  Sum_probs=48.3

Q ss_pred             CCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhh
Q psy7111          20 QFDGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM   82 (87)
Q Consensus        20 ~~~~~~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~   82 (87)
                      ..+....+..|.++-.+-|...|..+=+=+..|..=++....  |..-...|-+...+|++.|
T Consensus         6 ~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~--L~~~s~~F~~~a~~l~r~~   66 (74)
T 2nps_A            6 RNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES--LSDNATAFSNRSKQLRRQM   66 (74)
T ss_dssp             CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            344568888898988899999999998888888776666666  7777888988888877654


No 36 
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=38.04  E-value=21  Score=20.81  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHhhHhHHHH
Q psy7111          50 IDIGTEVKYQNEHLLRGMDDDFD   72 (87)
Q Consensus        50 i~Ig~Ev~~Qn~~lLd~l~~~fd   72 (87)
                      ..|..|++.|-. +|+.|+..+.
T Consensus         6 e~I~~El~kQe~-lL~~LH~e~~   27 (56)
T 2kwh_A            6 AGIKEEIRRQEF-LLNSLHRDLQ   27 (56)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHTTC
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHH
Confidence            468899999999 9999988774


No 37 
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=35.77  E-value=76  Score=21.93  Aligned_cols=43  Identities=19%  Similarity=0.258  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhh
Q psy7111          36 SDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSM   82 (87)
Q Consensus        36 d~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~   82 (87)
                      +-+...|..+-.+|..||.+|.+|.. +   +...|...+..|--+.
T Consensus         7 ~~i~~~l~~~~~~s~~iGg~v~~~a~-~---v~~aF~~qr~~L~~as   49 (176)
T 1s0p_A            7 NLVDQHITPFVALSKKLAPEVGNQVE-Q---LVKAIDAEKALINTAS   49 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHH-H---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCHHHHHHHH-H---HHHHHHHHHHHHHHHH
Confidence            35788999999999999999999999 6   4567777666665443


No 38 
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.52  E-value=46  Score=21.44  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=25.2

Q ss_pred             CCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111          22 DGGDAIHQENEQLTSDLRNKIQALKSLTIDIGT   54 (87)
Q Consensus        22 ~~~~~le~QND~~ld~L~~kV~~LK~lsi~Ig~   54 (87)
                      +.++.+-+.-...|-.+...|+.|+.+-..||.
T Consensus        10 ~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT   42 (130)
T 2dnx_A           10 RDFSSIIQTCSGNIQRISQATAQIKNLMSQLGT   42 (130)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            345667777777788888889999888777774


No 39 
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=33.38  E-value=55  Score=17.11  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111          38 LRNKIQALKSLTIDIGTEVKYQNE   61 (87)
Q Consensus        38 L~~kV~~LK~lsi~Ig~Ev~~Qn~   61 (87)
                      |..||.-|-.=-..+.+||..=..
T Consensus         5 LE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            5 LEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHH
Confidence            334444443334444444444333


No 40 
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=32.64  E-value=79  Score=18.72  Aligned_cols=41  Identities=17%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHH
Q psy7111          29 QENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDD   70 (87)
Q Consensus        29 ~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~   70 (87)
                      +--+..+..|..+|..|......+..|...--. .+..|...
T Consensus        25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~-~i~~L~~E   65 (70)
T 1gd2_E           25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQ-KVRQLEEE   65 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            334678899999999999888877766655444 44444443


No 41 
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=32.08  E-value=61  Score=17.23  Aligned_cols=28  Identities=21%  Similarity=0.274  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111          34 LTSDLRNKIQALKSLTIDIGTEVKYQNE   61 (87)
Q Consensus        34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~   61 (87)
                      ++.+|..||.-|.+=-..+.+||..=-.
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~   29 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKK   29 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3455666666666555555556554433


No 42 
>2l3n_A DNA-binding protein RAP1, telomere length regulat; TAZ1; NMR {Schizosaccharomyces pombe}
Probab=31.65  E-value=47  Score=20.96  Aligned_cols=38  Identities=18%  Similarity=0.318  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          47 SLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        47 ~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      .+-.+|.+=+++-|. --..+-+.|++++++++.+..++
T Consensus        13 evdeaidnilrytns-teqqfleamestggrvriaiakl   50 (104)
T 2l3n_A           13 EVDEAIDNILRYTNS-TEQQFLEAMESTGGRVRIAIAKL   50 (104)
T ss_dssp             HHHHHHHHHHHHHTC-CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccc-hHHHHHHHHHhcCCeeehHHHHH
Confidence            455567777777777 66677788999999998887765


No 43 
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=29.38  E-value=67  Score=16.87  Aligned_cols=27  Identities=15%  Similarity=0.214  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111          35 TSDLRNKIQALKSLTIDIGTEVKYQNE   61 (87)
Q Consensus        35 ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~   61 (87)
                      +.+|..||.-|=+=...+.+||..=-.
T Consensus         3 MnQLEdKvEeLl~~~~~L~~EV~RLk~   29 (34)
T 2bni_A            3 MKQIEDKLEEILSKGHHICNELARIKK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            445555555555555566666654443


No 44 
>3j21_b PFEL32, 50S ribosomal protein L32E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.35  E-value=22  Score=23.90  Aligned_cols=16  Identities=31%  Similarity=0.565  Sum_probs=13.1

Q ss_pred             CchhhhhhccCCCCCC
Q psy7111           1 MDNRMRRQHAGNYYEP   16 (87)
Q Consensus         1 ~~~~~~~~~~~~~~~~   16 (87)
                      ||||+||.+-|.+--|
T Consensus        46 iDnrvRrrfKG~~~mp   61 (130)
T 3j21_b           46 IDSKMRLKLKGKPRSP   61 (130)
T ss_dssp             SSCHHHHTCTTSCCCC
T ss_pred             cccchhccccCCCCCC
Confidence            7999999988776555


No 45 
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=29.18  E-value=68  Score=16.85  Aligned_cols=26  Identities=15%  Similarity=0.169  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111          36 SDLRNKIQALKSLTIDIGTEVKYQNE   61 (87)
Q Consensus        36 d~L~~kV~~LK~lsi~Ig~Ev~~Qn~   61 (87)
                      .+|..||.-|=+=-..+.+||..=..
T Consensus         4 ~QLEdKVEeLl~~n~~Le~EV~RLk~   29 (34)
T 1uo4_A            4 KQIEDKGEEILSKLYHIENELARIKK   29 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34444444444444455555554444


No 46 
>3iz5_h 60S ribosomal protein L32 (L32E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_h 2zkr_9
Probab=28.93  E-value=22  Score=23.91  Aligned_cols=16  Identities=38%  Similarity=0.694  Sum_probs=13.1

Q ss_pred             CchhhhhhccCCCCCC
Q psy7111           1 MDNRMRRQHAGNYYEP   16 (87)
Q Consensus         1 ~~~~~~~~~~~~~~~~   16 (87)
                      ||||+||.+-|.+--|
T Consensus        39 iDnrvRrrfkG~~~mp   54 (133)
T 3iz5_h           39 IDSRVRRKFKGCTLMP   54 (133)
T ss_dssp             TTCHHHHTCTTSCCCC
T ss_pred             cccchhccccCCcCCC
Confidence            7999999988766555


No 47 
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=28.66  E-value=97  Score=18.46  Aligned_cols=39  Identities=13%  Similarity=0.111  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          46 KSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        46 K~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      +.+++.+-.++..|.. -|+.....++.+..-|+.+-+.|
T Consensus        36 e~~G~~Tl~~L~~Q~E-ql~r~~~~ld~i~~~l~~a~k~L   74 (79)
T 1n7s_C           36 KDAGIRTLVMLDEQGE-QLDRVEEGMNHINQDMKEAEKNL   74 (79)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh-hHHHHHhHHHHHHhHHHHHHHHH
Confidence            4478888889999999 88888888888888887776544


No 48 
>4a17_X RPL32, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_X 4a1c_X 4a1e_X
Probab=27.96  E-value=23  Score=23.87  Aligned_cols=16  Identities=38%  Similarity=0.615  Sum_probs=12.9

Q ss_pred             CchhhhhhccCCCCCC
Q psy7111           1 MDNRMRRQHAGNYYEP   16 (87)
Q Consensus         1 ~~~~~~~~~~~~~~~~   16 (87)
                      ||||+||.+-|.+--|
T Consensus        40 iDnrvRrrfKG~~~mp   55 (134)
T 4a17_X           40 IDNRVRRRFRGQRRMA   55 (134)
T ss_dssp             SSCTGGGTCTTSCCCC
T ss_pred             cccchhhcccCccCCC
Confidence            7999999988775444


No 49 
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=26.95  E-value=84  Score=20.19  Aligned_cols=15  Identities=13%  Similarity=0.160  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHH
Q psy7111          33 QLTSDLRNKIQALKS   47 (87)
Q Consensus        33 ~~ld~L~~kV~~LK~   47 (87)
                      ..+..|..+|..++.
T Consensus        38 ~~l~~Lq~~l~~l~~   52 (177)
T 1pwb_A           38 GQVQHLQAAFSQYKK   52 (177)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            455666666666654


No 50 
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=26.38  E-value=50  Score=17.27  Aligned_cols=14  Identities=43%  Similarity=0.577  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHH
Q psy7111          35 TSDLRNKIQALKSL   48 (87)
Q Consensus        35 ld~L~~kV~~LK~l   48 (87)
                      +.+|..||++||.-
T Consensus         3 vsalkekvsalkeq   16 (36)
T 3tq2_A            3 VSALKEKVSALKEQ   16 (36)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHH
Confidence            45677777777753


No 51 
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.95  E-value=1.6e+02  Score=20.11  Aligned_cols=47  Identities=6%  Similarity=-0.026  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhH
Q psy7111          33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNN   80 (87)
Q Consensus        33 ~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~   80 (87)
                      ..+..|...+..|+.=-.+...|++..++ .++.+.+++......+..
T Consensus        68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K-~~e~l~DEl~aLqlq~n~  114 (152)
T 3a7p_A           68 NTLAILQKELKSKEQEIRRLKEVIALKNK-NTERLNAALISGTIENNV  114 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            46778888888888888889999999999 999999988776655443


No 52 
>3u5e_e 60S ribosomal protein L32, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_h 1s1i_0 3izs_h 3o5h_b 3o58_b 3u5i_e 4b6a_e 3jyw_0
Probab=25.46  E-value=23  Score=23.73  Aligned_cols=16  Identities=38%  Similarity=0.729  Sum_probs=12.9

Q ss_pred             CchhhhhhccCCCCCC
Q psy7111           1 MDNRMRRQHAGNYYEP   16 (87)
Q Consensus         1 ~~~~~~~~~~~~~~~~   16 (87)
                      ||||+||.+-|.+--|
T Consensus        38 iDnrvRrrfkG~~~mp   53 (130)
T 3u5e_e           38 IDSVVRRRFRGNISQP   53 (130)
T ss_dssp             SSCTTTTTCTTSCCCC
T ss_pred             cccchhccccCCcCCC
Confidence            7999999988775554


No 53 
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.91  E-value=1.3e+02  Score=18.55  Aligned_cols=55  Identities=7%  Similarity=0.154  Sum_probs=32.1

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHh
Q psy7111          25 DAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS   81 (87)
Q Consensus        25 ~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t   81 (87)
                      ..+..|.++-.+-|...|..+=+=+..|.+=++....  |..-...|.+...+|++.
T Consensus        33 ~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~--L~~~S~~F~k~A~kl~rk   87 (96)
T 1sfc_A           33 QQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA--LQAGASQFETSAAKLKRK   87 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            4455555555555666666666666666544444444  555566777766666654


No 54 
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.14  E-value=1.1e+02  Score=17.40  Aligned_cols=55  Identities=9%  Similarity=0.148  Sum_probs=37.5

Q ss_pred             CcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchh
Q psy7111          23 GGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLN   79 (87)
Q Consensus        23 ~~~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~   79 (87)
                      ....+..|.++-..-|...|..+=.=+..|..=++....  |..-...|-+...+|+
T Consensus        10 ~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~--L~~~s~~F~k~A~~l~   64 (65)
T 1gl2_A           10 RVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTED--LEATSEHFKTTSQKVA   64 (65)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence            457777888877778888888887777777665555555  6666667766655554


No 55 
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=23.88  E-value=4.2  Score=26.57  Aligned_cols=13  Identities=0%  Similarity=0.151  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHH
Q psy7111          35 TSDLRNKIQALKS   47 (87)
Q Consensus        35 ld~L~~kV~~LK~   47 (87)
                      +..+...|.-.|.
T Consensus        35 l~~vq~evdeVk~   47 (119)
T 2kog_A           35 LQQTQAQVDEVVD   47 (119)
T ss_dssp             HHHSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444444


No 56 
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.85  E-value=48  Score=17.43  Aligned_cols=12  Identities=42%  Similarity=0.551  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHhh
Q psy7111          54 TEVKYQNEHLLRG   66 (87)
Q Consensus        54 ~Ev~~Qn~~lLd~   66 (87)
                      +|++.||. +|+.
T Consensus        17 ddlkrQN~-~Le~   28 (34)
T 1a93_B           17 DDLKRQNA-LLEQ   28 (34)
T ss_dssp             HHHHHHHH-HHHH
T ss_pred             HHHHHHHH-HHHH
Confidence            57788888 7764


No 57 
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=23.15  E-value=1.1e+02  Score=18.44  Aligned_cols=25  Identities=12%  Similarity=0.268  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111          34 LTSDLRNKIQALKSLTIDIGTEVKY   58 (87)
Q Consensus        34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~   58 (87)
                      .+++|...|+.|+.++..+--++-+
T Consensus         4 di~eLkkevkKL~~~A~q~kmdLHD   28 (71)
T 2js5_A            4 GAEELKAKLKKLNAQATALKMDLHD   28 (71)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3578999999999998877666543


No 58 
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=23.01  E-value=1.1e+02  Score=17.01  Aligned_cols=55  Identities=18%  Similarity=0.210  Sum_probs=33.5

Q ss_pred             hhccCCCCCCCCCCC--CCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7111           7 RQHAGNYYEPVPNQF--DGGDAIHQENEQLTSDLRNKIQALKSLTIDIGTEVKYQNE   61 (87)
Q Consensus         7 ~~~~~~~~~~~~~~~--~~~~~le~QND~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~   61 (87)
                      +-..|+...+.|...  +-...+...-+...+.|...+...+.+...+..|++.--.
T Consensus        20 ~i~~g~~~~~~~~~~~~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~   76 (114)
T 3zcc_A           20 KIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKQLADDGTLLMAGVSHDLRTPLT   76 (114)
T ss_dssp             HHHTTCTTCCCTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcChHH
Confidence            333454444444432  1224555666667778888888888888888888775443


No 59 
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.74  E-value=1.2e+02  Score=17.59  Aligned_cols=30  Identities=33%  Similarity=0.347  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7111          36 SDLRNKIQALKSLTIDIGTEVKYQNEHLLRG   66 (87)
Q Consensus        36 d~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~   66 (87)
                      ..|..||..|+.--.....|+..=|. ||-+
T Consensus        21 ~~L~~kv~~Le~~c~e~eQEieRL~~-LLkq   50 (58)
T 3a2a_A           21 VQLAAKIQHLEFSCSEKEQEIERLNK-LLRQ   50 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            57889999999999999999999888 8754


No 60 
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.12  E-value=2.1e+02  Score=20.02  Aligned_cols=51  Identities=8%  Similarity=0.028  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhh
Q psy7111          33 QLTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMAR   84 (87)
Q Consensus        33 ~~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~R   84 (87)
                      ..+..|...+..++.--..+..++.+-.. -+..+..+++.+..++...-.+
T Consensus        32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~-~~~~~e~~i~~~~~ri~~~~~~   82 (256)
T 3na7_A           32 KDLDKALNDKEAKNKAILNLEEEKLALKL-QVSKNEQTLQDTNAKIASIQKK   82 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555566666666666666666666 5666666666666665554443


No 61 
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=21.97  E-value=1.2e+02  Score=17.23  Aligned_cols=51  Identities=14%  Similarity=0.033  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHhhhhc
Q psy7111          34 LTSDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNSMARS   85 (87)
Q Consensus        34 ~ld~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~Rl   85 (87)
                      .+..-...+.--..+|..|-.++..|-. -|....+.++.+..-|+.+-+-|
T Consensus        10 ~l~~s~ri~~ETE~iG~~~l~~L~~QRE-ql~~t~~~l~~~d~~l~~s~k~L   60 (65)
T 1gl2_C           10 SIERSHRIATETDQIGTEIIEELGEQRD-QLERTKSRLVNTNENLSKSRKIL   60 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHhHHHhHHHhHHhHHHHHHHHH
Confidence            3444444555556789999999999999 88888888888777777665544


No 62 
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.85  E-value=2.5e+02  Score=20.90  Aligned_cols=31  Identities=16%  Similarity=0.105  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHhhHhHHHHhhccchhHhhhh
Q psy7111          53 GTEVKYQNEHLLRGMDDDFDRTGGFLNNSMAR   84 (87)
Q Consensus        53 g~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t~~R   84 (87)
                      .+|-...-. +|++++.....+...++.+..|
T Consensus       448 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  478 (487)
T 3oja_A          448 AEENARLKK-LNGEADLALASANATLQELVVR  478 (487)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhh-hhhhhhhhhHhcccHHHHHHHH
Confidence            344444555 6666777777777666665543


No 63 
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=20.87  E-value=28  Score=18.02  Aligned_cols=19  Identities=16%  Similarity=0.494  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy7111          37 DLRNKIQALKSLTIDIGTE   55 (87)
Q Consensus        37 ~L~~kV~~LK~lsi~Ig~E   55 (87)
                      .....|++.|+|+-.|+.+
T Consensus         9 aFadA~~RaRQIaAKig~~   27 (31)
T 2kxh_B            9 AFKDALQRARQIAAKIGGD   27 (31)
T ss_dssp             HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            5567788999999888754


No 64 
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=20.58  E-value=95  Score=19.84  Aligned_cols=13  Identities=31%  Similarity=0.534  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHH
Q psy7111          35 TSDLRNKIQALKS   47 (87)
Q Consensus        35 ld~L~~kV~~LK~   47 (87)
                      |..|..+|..|++
T Consensus        25 l~~L~~~~~~L~~   37 (168)
T 1buu_A           25 LANMEAEINTLKS   37 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444433


Done!