Query psy7111
Match_columns 87
No_of_seqs 102 out of 349
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 18:27:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7111.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7111hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vcsa1 a.47.2.1 (A:8-96) Vesi 64.6 9.3 0.00068 22.1 5.5 54 27-81 3-64 (89)
2 d1tjla1 a.2.14.1 (A:7-110) Dna 45.3 7.1 0.00052 23.4 2.6 10 12-21 15-24 (104)
3 d1io1a_ e.32.1.1 (A:) Phase 1 35.3 13 0.00098 23.8 2.9 22 32-53 23-44 (395)
4 d1s0pa_ a.192.1.1 (A:) N-termi 30.1 51 0.0037 21.2 5.2 42 36-81 7-48 (176)
5 d1bf5a1 a.47.1.1 (A:136-316) S 22.7 72 0.0053 20.3 4.9 33 36-73 5-37 (181)
6 d1vqoy1 c.9.2.1 (Y:95-236) Rib 21.1 15 0.0011 23.4 1.0 16 1-16 55-70 (142)
7 d1bg1a1 a.47.1.1 (A:136-321) S 19.5 92 0.0067 19.9 4.9 32 36-72 7-38 (186)
8 d1p3wa_ c.67.1.3 (A:) Cysteine 18.0 37 0.0027 22.5 2.6 24 28-51 362-385 (391)
9 d1gjja2 a.140.1.1 (A:111-153) 16.5 43 0.0031 17.0 2.1 29 6-34 11-39 (43)
10 d1w6sb_ a.137.2.1 (B:) Methano 12.1 22 0.0016 20.2 -0.0 6 11-16 25-30 (73)
No 1
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=64.56 E-value=9.3 Score=22.12 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=40.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHh
Q psy7111 27 IHQENEQLTSDLRNKIQALKS--------LTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (87)
Q Consensus 27 le~QND~~ld~L~~kV~~LK~--------lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t 81 (87)
+|+|--.....+..++.++.. .-..|...+++=.. ||+.|+-.+-++-...+..
T Consensus 3 YE~~y~~l~a~i~~kl~~i~~~~geerk~~l~~ie~~leEA~e-ll~qMelEvr~~p~s~R~~ 64 (89)
T d1vcsa1 3 YEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARE-LLEQMDLEVREIPPQSRGM 64 (89)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHHH-HHHHHHHHHHhCCHHHHHH
Confidence 466777778888888877755 45678889999999 9999998887766554443
No 2
>d1tjla1 a.2.14.1 (A:7-110) DnaK suppressor protein DksA, alpha-hairpin domain {Escherichia coli [TaxId: 562]}
Probab=45.29 E-value=7.1 Score=23.44 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=7.2
Q ss_pred CCCCCCCCCC
Q psy7111 12 NYYEPVPNQF 21 (87)
Q Consensus 12 ~~~~~~~~~~ 21 (87)
.||.|.|...
T Consensus 15 ~pY~p~~~e~ 24 (104)
T d1tjla1 15 EPYQEKPGEE 24 (104)
T ss_dssp CCCCCCTTCC
T ss_pred CCCCCCCCCC
Confidence 6888877654
No 3
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=35.32 E-value=13 Score=23.78 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7111 32 EQLTSDLRNKIQALKSLTIDIG 53 (87)
Q Consensus 32 D~~ld~L~~kV~~LK~lsi~Ig 53 (87)
|..|++++..+.|+|+|++.=.
T Consensus 23 e~al~~~~~iL~r~reLavqaa 44 (395)
T d1io1a_ 23 EGALNEINNNLQRVRELAVQSA 44 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 6789999999999999998533
No 4
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=30.13 E-value=51 Score=21.18 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHhhccchhHh
Q psy7111 36 SDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDRTGGFLNNS 81 (87)
Q Consensus 36 d~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~t~~~L~~t 81 (87)
+-+...|..+-.+|..||.+|.+|.. ++. ..|+..+..|.-+
T Consensus 7 ~~i~~~v~~~~~~s~~Igg~V~~~a~-~v~---~aF~~qr~~L~~a 48 (176)
T d1s0pa_ 7 NLVDQHITPFVALSKKLAPEVGNQVE-QLV---KAIDAEKALINTA 48 (176)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHH-HHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHH-HHH---HHHHHHHHHHHHH
Confidence 35788999999999999999999999 665 4566665555544
No 5
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.70 E-value=72 Score=20.34 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHh
Q psy7111 36 SDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFDR 73 (87)
Q Consensus 36 d~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd~ 73 (87)
.+|..+|..||....+|..+++ .|.++.++|+-
T Consensus 5 ~ei~~~v~~l~~~vq~~e~~ik-----~Led~Qd~fdf 37 (181)
T d1bf5a1 5 KELDSKVRNVKDKVMCIEHEIK-----SLEDLQDEYDF 37 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 3678888899988888888886 46666666653
No 6
>d1vqoy1 c.9.2.1 (Y:95-236) Ribosomal protein L32e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=21.06 E-value=15 Score=23.39 Aligned_cols=16 Identities=19% Similarity=0.046 Sum_probs=12.9
Q ss_pred CchhhhhhccCCCCCC
Q psy7111 1 MDNRMRRQHAGNYYEP 16 (87)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (87)
|||||||.+-|.+--|
T Consensus 55 iDnkvRr~~KG~~~mp 70 (142)
T d1vqoy1 55 QLSKQRRGIKGKGDTV 70 (142)
T ss_dssp TTCTTTTTCTTSCCCC
T ss_pred CcchhhccccCCCCCC
Confidence 7999999987766555
No 7
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.46 E-value=92 Score=19.88 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Q psy7111 36 SDLRNKIQALKSLTIDIGTEVKYQNEHLLRGMDDDFD 72 (87)
Q Consensus 36 d~L~~kV~~LK~lsi~Ig~Ev~~Qn~~lLd~l~~~fd 72 (87)
.+|..+|..||....+|.++++. |.++.++|+
T Consensus 7 ~ei~~~v~~l~~~~q~~e~~ik~-----Le~~Qe~f~ 38 (186)
T d1bg1a1 7 QMLEQHLQDVRKRVQDLEQKMKV-----VENLQDDFD 38 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 46788899999999999998874 444455544
No 8
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}
Probab=18.02 E-value=37 Score=22.45 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Q psy7111 28 HQENEQLTSDLRNKIQALKSLTID 51 (87)
Q Consensus 28 e~QND~~ld~L~~kV~~LK~lsi~ 51 (87)
+++-|..++.|...|.+||.++-.
T Consensus 362 ~edid~l~~~l~~~l~~lr~~~~~ 385 (391)
T d1p3wa_ 362 EEEIDYTIELVRKSIGRLRDLSPL 385 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhChH
Confidence 456789999999999999998743
No 9
>d1gjja2 a.140.1.1 (A:111-153) Thymopoietin, LAP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.51 E-value=43 Score=16.97 Aligned_cols=29 Identities=14% Similarity=-0.073 Sum_probs=19.9
Q ss_pred hhhccCCCCCCCCCCCCCcchHHHhhHHH
Q psy7111 6 RRQHAGNYYEPVPNQFDGGDAIHQENEQL 34 (87)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~le~QND~~ 34 (87)
|+.-.-++++|+|-..+-...++...-+.
T Consensus 11 r~~L~~~G~~~GPIt~sTR~vy~kkL~~l 39 (43)
T d1gjja2 11 LDQLVKYGVNPGPIVGTTRKLYEKKLLKL 39 (43)
T ss_dssp HHEEEBTTCCCCCCCSSEHHHHHHHEHHH
T ss_pred HHHHHHcCCCCCCcCcchHHHHHHHHHHH
Confidence 43444578999999887777777665443
No 10
>d1w6sb_ a.137.2.1 (B:) Methanol dehydrogenase, light chain {Methylobacterium extorquens [TaxId: 408]}
Probab=12.10 E-value=22 Score=20.21 Aligned_cols=6 Identities=50% Similarity=1.304 Sum_probs=2.8
Q ss_pred CCCCCC
Q psy7111 11 GNYYEP 16 (87)
Q Consensus 11 ~~~~~~ 16 (87)
|+-|+|
T Consensus 25 GsKYDP 30 (73)
T d1w6sb_ 25 GSKYDP 30 (73)
T ss_dssp TSTTCC
T ss_pred CCcCCC
Confidence 444444
Done!