Query psy7112
Match_columns 319
No_of_seqs 133 out of 169
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 18:28:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4464|consensus 100.0 7E-87 1.5E-91 651.9 24.5 317 1-318 1-493 (532)
2 PF10165 Ric8: Guanine nucleot 100.0 3.3E-65 7.2E-70 506.9 21.9 163 153-316 261-429 (446)
3 PF08793 2C_adapt: 2-cysteine 59.3 5.9 0.00013 27.5 1.4 11 278-288 9-19 (37)
4 PF02985 HEAT: HEAT repeat; I 39.2 31 0.00067 22.0 2.3 27 203-229 3-29 (31)
5 cd00922 Cyt_c_Oxidase_IV Cytoc 38.8 18 0.00039 31.6 1.5 10 279-288 122-131 (136)
6 KOG2775|consensus 38.4 32 0.00069 34.6 3.3 34 154-187 76-109 (397)
7 KOG2019|consensus 33.4 45 0.00098 37.1 3.7 64 9-73 463-550 (998)
8 cd02646 R3H_G-patch R3H domain 32.8 67 0.0015 23.7 3.6 30 17-46 2-31 (58)
9 PF11545 HemeBinding_Shp: Cell 29.7 10 0.00022 34.1 -1.5 23 280-302 15-41 (152)
10 PF00514 Arm: Armadillo/beta-c 28.9 66 0.0014 21.4 2.7 27 203-229 15-41 (41)
11 PF03242 LEA_3: Late embryogen 28.6 53 0.0012 27.1 2.6 14 279-292 64-77 (93)
12 PF11521 TFIIE-A_C-term: C-ter 27.9 43 0.00094 27.3 2.0 17 296-312 62-79 (86)
13 cd05501 Bromo_SP100C_like Brom 27.7 80 0.0017 26.3 3.6 51 1-54 41-91 (102)
14 smart00297 BROMO bromo domain. 26.2 1.1E+02 0.0024 24.0 4.1 42 1-43 48-89 (107)
15 PRK02289 4-oxalocrotonate taut 25.6 76 0.0016 23.2 2.8 23 296-318 9-33 (60)
16 cd05513 Bromo_brd7_like Bromod 25.1 1E+02 0.0022 25.2 3.7 41 1-42 42-82 (98)
17 PF04418 DUF543: Domain of unk 24.3 60 0.0013 25.8 2.1 18 232-249 26-43 (75)
18 cd05528 Bromo_AAA Bromodomain; 23.0 1.5E+02 0.0033 24.7 4.5 39 1-40 44-82 (112)
19 cd05509 Bromo_gcn5_like Bromod 22.5 1.5E+02 0.0032 23.7 4.2 51 1-53 42-92 (101)
20 cd05508 Bromo_RACK7 Bromodomai 21.6 1.4E+02 0.0031 24.4 3.9 52 1-54 43-94 (99)
21 PF02936 COX4: Cytochrome c ox 21.1 40 0.00086 29.6 0.6 8 279-286 122-129 (142)
22 cd05495 Bromo_cbp_like Bromodo 20.4 88 0.0019 25.8 2.5 52 1-54 47-98 (108)
No 1
>KOG4464|consensus
Probab=100.00 E-value=7e-87 Score=651.88 Aligned_cols=317 Identities=33% Similarity=0.521 Sum_probs=289.9
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHHHHHHHHHHHhcCCCCchhHHHHHHHhhhhcCCCCc
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLVFNILCNPMYSECYIDCLSCLKLLFRDSKY 80 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~L~~~l~~~L~~~~~~~~~~~cL~~lriLSRDk~~ 80 (319)
|+.... +..+++|+.+.|..+|+.||.+|++.|+||+.++++|++||+++|++|+++.+++||+.||+|+|||||||++
T Consensus 1 m~~~~~-l~~v~age~~~I~e~l~~~n~k~aa~~kFd~a~~d~r~eL~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~ 79 (532)
T KOG4464|consen 1 MLESDL-LASVEAGEADKIEEFLRKYNFKHAAVFKFDSANSDDRKELGERIFEVLENGEPLTHRVVCLETVRILSRDKDG 79 (532)
T ss_pred CchHHH-HHHHhcCCchhHHHHHHHhhhhhhhhhcccccchhhHHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhccccc
Confidence 566666 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcHHHHHHHHHhcCCCCCCC----------------------------------------------------CCCh
Q psy7112 81 LDELISQERFNILLQTARLYNTQP----------------------------------------------------TPSS 108 (319)
Q Consensus 81 L~~~~t~~~~~~L~~~A~l~~~~~----------------------------------------------------~~~~ 108 (319)
|+|+++++.+++|+++|.|...+. +|++
T Consensus 80 L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~ 159 (532)
T KOG4464|consen 80 LEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKD 159 (532)
T ss_pred cccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999976553 7777
Q ss_pred HH-------------------HH--------------hhhhCCC-----C---chhHHHH---H----------------
Q psy7112 109 LE-------------------QL--------------GSGAGEG-----E---SHNADAL---L---------------- 128 (319)
Q Consensus 109 v~-------------------~l--------------~~~l~~~-----~---~~~~~~~---L---------------- 128 (319)
++ || +..+|.. | ||++|+| |
T Consensus 160 ~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke 239 (532)
T KOG4464|consen 160 SSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKE 239 (532)
T ss_pred chhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccch
Confidence 66 11 4445522 2 3999999 3
Q ss_pred -------HHHHHHHHHH-------------------hhcCCCCC-----CCCCC--------------------------
Q psy7112 129 -------TIITYLHEEL-------------------ASRVPSPG-----TTPTS-------------------------- 151 (319)
Q Consensus 129 -------~l~~il~~~l-------------------l~~~p~~~-----~~~~~-------------------------- 151 (319)
||++++|||+ |.|+|... ....+
T Consensus 240 ~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~ 319 (532)
T KOG4464|consen 240 EHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSE 319 (532)
T ss_pred hhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhH
Confidence 8999999998 56666551 11222
Q ss_pred -----CCCCccchhhHHHHHHHHHHhcHHHHHHHHhhcCCCCccccCCCCCCCcchhhHhhhccCCCcchHHHHHHHHHH
Q psy7112 152 -----SSGTVDHILPVLHVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCADLLFV 226 (319)
Q Consensus 152 -----~~~l~e~l~PlL~lL~~~~~a~~~~Rk~lr~~lLP~~~Dr~~~pe~g~tLrsrLlRLmT~~~~~lk~~vaelLFv 226 (319)
++++.|.++|+|+||+++|++++.+|||+|.+||||++||++|||+|.+|||||+|+||+|+..+|+.+|||||+
T Consensus 320 ~qq~~~ss~~EllsPvlsVL~~car~~R~~Rkylr~qVLPPLrDV~~RPEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFv 399 (532)
T KOG4464|consen 320 KQQEKESSLHELLSPVLSVLTECARSHRVMRKYLRQQVLPPLRDVSQRPEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFV 399 (532)
T ss_pred HHHhhhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHHhcCCchhhhhcCcchhHHHHHhhHhheeccchhhhhhhHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChhhhHhhccccchhHHHHHhCcCCCCCCCCCCCCCCCcchHHhhhcCCCCCCcccccCCCCCCCCCCCChhhHh-
Q psy7112 227 LCKENPARLIKYTGYGNAAGMLAARGLLGCQNKGQYSSSSEESDTEEYLRVKDNINPVTGVYEPPKPDSTQEHLRSTFE- 305 (319)
Q Consensus 227 LC~ed~~rfvk~~GYGnAAG~La~rGll~~~~~~~~~S~sedSdTEey~~~~~~INPITG~~e~~~~~p~e~MTeEEKE- 305 (319)
|||++++||+||||||||||+||+||++++++.+.|||+|||||||||+++++.||||||+++++.|+||+||||||||
T Consensus 400 LCKesV~rmIKYtGyGnaAGllA~rGll~~~r~e~~~Se~EDtdTeeYkq~k~sINpVtG~ve~~~~n~ld~mtEEQKEy 479 (532)
T KOG4464|consen 400 LCKESVNRMIKYTGYGNAAGLLAARGLLAGGRQEKHYSEDEDTDTEEYKQAKDSINPVTGAVEESDPNPLDGMTEEQKEY 479 (532)
T ss_pred HhhcchhhhhhhcccccHHHHHHhhhhhccCCCccCcccccccchHHHHhhcccCCccccccCCCCCChhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -HHHHHHHhhhhhh
Q psy7112 306 -TVSLTSAYSETVQ 318 (319)
Q Consensus 306 -~~~l~~~~~~~~~ 318 (319)
+|+|+|.|+|--+
T Consensus 480 EAMkLVnm~dkl~~ 493 (532)
T KOG4464|consen 480 EAMKLVNMMDKLSR 493 (532)
T ss_pred HHHHHHHHHHHHHh
Confidence 6999999998643
No 2
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=100.00 E-value=3.3e-65 Score=506.91 Aligned_cols=163 Identities=43% Similarity=0.678 Sum_probs=149.9
Q ss_pred CCCccchhhHHHHHHHHHHhcHHHHHHHHhhcCCCCccccCCCCCCCcchhhHhhhccCCCcchHHHHHHHHHHHhcCCh
Q psy7112 153 SGTVDHILPVLHVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCADLLFVLCKENP 232 (319)
Q Consensus 153 ~~l~e~l~PlL~lL~~~~~a~~~~Rk~lr~~lLP~~~Dr~~~pe~g~tLrsrLlRLmT~~~~~lk~~vaelLFvLC~ed~ 232 (319)
.++++.++|+|++|+++|++++.+|+|||++||||++||+.|||+|+|||||||||||+|.+++|++||||||+||||||
T Consensus 261 ~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 261 LKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred ccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhccccchhHHHHHhCcCCCCCCCCCCCCCCCcchHHhhhcCCCCCCcccccCC-CCCCCCCCCChhhHhH--H--
Q psy7112 233 ARLIKYTGYGNAAGMLAARGLLGCQNKGQYSSSSEESDTEEYLRVKDNINPVTGVYEP-PKPDSTQEHLRSTFET--V-- 307 (319)
Q Consensus 233 ~rfvk~~GYGnAAG~La~rGll~~~~~~~~~S~sedSdTEey~~~~~~INPITG~~e~-~~~~p~e~MTeEEKE~--~-- 307 (319)
+||||||||||||||||++|+.++++ ..++|+++||+||+|+++++.|||||||+++ ++++||+||||||||| +
T Consensus 341 ~~~v~~~GyG~AaG~L~~~gl~~~~~-~~~s~~~~~s~~~~~~~~~~~~npitg~~~~~~~~~~~~~mt~eeke~ea~~l 419 (446)
T PF10165_consen 341 SRFVKYVGYGNAAGFLASRGLGGPPE-EAYSSDSEDSDTEEYKEAKRPINPITGQREDAEKPNPMPEMTEEEKEREAERL 419 (446)
T ss_pred HHHHHHcCchhHHHHHHHcCCCCCcc-cccccCcccCCCccccccccCcCCCcCCCCCCCCCCCccccchhHHHHHHHHH
Confidence 99999999999999999999933333 5667777999999999999999999999966 8999999999999987 3
Q ss_pred -HHHHHhhhh
Q psy7112 308 -SLTSAYSET 316 (319)
Q Consensus 308 -~l~~~~~~~ 316 (319)
.|||+|++|
T Consensus 420 ~~lf~rl~~~ 429 (446)
T PF10165_consen 420 FVLFDRLEKT 429 (446)
T ss_pred HHHHHHHHhC
Confidence 566666664
No 3
>PF08793 2C_adapt: 2-cysteine adaptor domain; InterPro: IPR014901 The virus-specific 2-cysteine adaptor is found fused to OTU/A20-like peptidases and S/T protein kinases. The associations to these proteins indicate that they might function as viral adaptors connecting the kinases and OTU/A20 peptidases to specific targets [].
Probab=59.27 E-value=5.9 Score=27.47 Aligned_cols=11 Identities=36% Similarity=0.703 Sum_probs=9.1
Q ss_pred CCCCCCccccc
Q psy7112 278 KDNINPVTGVY 288 (319)
Q Consensus 278 ~~~INPITG~~ 288 (319)
.+.+||+||+-
T Consensus 9 np~~NP~Tgr~ 19 (37)
T PF08793_consen 9 NPTVNPITGRK 19 (37)
T ss_pred CCCCCCCCCCc
Confidence 45699999986
No 4
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=39.16 E-value=31 Score=21.96 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=22.3
Q ss_pred hhHhhhccCCCcchHHHHHHHHHHHhc
Q psy7112 203 SHLTRCLSSGNTMLRDCCADLLFVLCK 229 (319)
Q Consensus 203 srLlRLmT~~~~~lk~~vaelLFvLC~ 229 (319)
..++++++++.+.+|.+++.-|=.+++
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 467899999999999999998877764
No 5
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=38.77 E-value=18 Score=31.56 Aligned_cols=10 Identities=40% Similarity=0.707 Sum_probs=8.3
Q ss_pred CCCCCccccc
Q psy7112 279 DNINPVTGVY 288 (319)
Q Consensus 279 ~~INPITG~~ 288 (319)
-.+|||||--
T Consensus 122 ~~~NPitG~s 131 (136)
T cd00922 122 MKVNPITGYA 131 (136)
T ss_pred hCCCCCcccc
Confidence 5899999953
No 6
>KOG2775|consensus
Probab=38.41 E-value=32 Score=34.62 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=29.8
Q ss_pred CCccchhhHHHHHHHHHHhcHHHHHHHHhhcCCC
Q psy7112 154 GTVDHILPVLHVLSEAARHHKALRRLIRNQILPA 187 (319)
Q Consensus 154 ~l~e~l~PlL~lL~~~~~a~~~~Rk~lr~~lLP~ 187 (319)
.|+-.=.++..=+++.+++|+.+|+|++.+|-|-
T Consensus 76 ~ler~~~~i~~d~rraAE~HRqvR~yv~s~ikPG 109 (397)
T KOG2775|consen 76 ELERTESDIYQDLRRAAEAHRQVRKYVQSIIKPG 109 (397)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 4555678999999999999999999999998774
No 7
>KOG2019|consensus
Probab=33.40 E-value=45 Score=37.06 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=49.0
Q ss_pred HHHhcCChhhHHHHHHHHhhhcccccccCC------------------------CChhhHHHHHHHHHHHhcCCCCchhH
Q psy7112 9 MRLESGNLSNIKNALKTFIEANSDSFTFPT------------------------LDRDKLDKLYSLVFNILCNPMYSECY 64 (319)
Q Consensus 9 ~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~------------------------~~~~~r~~L~~~l~~~L~~~~~~~~~ 64 (319)
+++......-++..+++|..+|..||+|+- ..+++++.++++=.........|. -
T Consensus 463 ~~l~ek~~~lfq~lIkkYilnn~h~~t~smqpd~e~~~~~~~eE~tkL~ek~~alteeD~~ei~k~~~eL~~kQ~tp~-d 541 (998)
T KOG2019|consen 463 QRLAEKSKKLFQPLIKKYILNNPHCFTFSMQPDPEFAEKLEQEEATKLEEKKAALTEEDLAEIAKAGEELREKQSTPE-D 541 (998)
T ss_pred HHHhhhchhHHHHHHHHHHhcCCceEEEEecCCchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCcc-c
Confidence 444444566899999999999999999952 344566677777788888888875 7
Q ss_pred HHHHHHhhh
Q psy7112 65 IDCLSCLKL 73 (319)
Q Consensus 65 ~~cL~~lri 73 (319)
..||-||.+
T Consensus 542 lsClPtL~v 550 (998)
T KOG2019|consen 542 LSCLPTLNV 550 (998)
T ss_pred ccccccccc
Confidence 789988887
No 8
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=32.79 E-value=67 Score=23.65 Aligned_cols=30 Identities=27% Similarity=0.631 Sum_probs=27.0
Q ss_pred hhHHHHHHHHhhhcccccccCCCChhhHHH
Q psy7112 17 SNIKNALKTFIEANSDSFTFPTLDRDKLDK 46 (319)
Q Consensus 17 ~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~ 46 (319)
++|.+.++.|...+.+...|+..+...|+-
T Consensus 2 ~~i~~~i~~F~~~~~~~~~fppm~~~~R~~ 31 (58)
T cd02646 2 EDIKDEIEAFLLDSRDSLSFPPMDKHGRKT 31 (58)
T ss_pred hHHHHHHHHHHhCCCceEecCCCCHHHHHH
Confidence 468899999999999999999999999973
No 9
>PF11545 HemeBinding_Shp: Cell surface heme-binding protein Shp; InterPro: IPR020985 Shp is a cell-surface protein which forms part of a complex responsible for haem uptake in Streptococcus pyogenes. During haem uptake Shp transfers a bound haem to HtsA, the lipoprotein component of an ABC transporter. This entry represents the haem-binding domain of Shp. It contains an immunoglobulin-like beta-sandwich fold and has a unique haem-iron coordination, with the axial ligands being two methionine residues from the same Shp molecule []. Surrounding the haem pocket, there is a negative surface which may serve as a docking interface for haem transfer. ; PDB: 2Q7A_B.
Probab=29.68 E-value=10 Score=34.12 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=11.4
Q ss_pred CCCCcccccCCCCCCC----CCCCChh
Q psy7112 280 NINPVTGVYEPPKPDS----TQEHLRS 302 (319)
Q Consensus 280 ~INPITG~~e~~~~~p----~e~MTeE 302 (319)
-.|||||++|.+--++ -.+|+|-
T Consensus 15 Y~~PvTg~iED~G~n~~~aiGqgM~e~ 41 (152)
T PF11545_consen 15 YRHPVTGVIEDSGGNPSYAIGQGMVES 41 (152)
T ss_dssp SS-TTT----STT-GGGHHHHHHHHHH
T ss_pred ccCCCccceEcCCCCcccccccchhhc
Confidence 5899999998776654 3566653
No 10
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=28.87 E-value=66 Score=21.37 Aligned_cols=27 Identities=22% Similarity=0.107 Sum_probs=22.7
Q ss_pred hhHhhhccCCCcchHHHHHHHHHHHhc
Q psy7112 203 SHLTRCLSSGNTMLRDCCADLLFVLCK 229 (319)
Q Consensus 203 srLlRLmT~~~~~lk~~vaelLFvLC~ 229 (319)
..|++++.+++..++..++--|..||+
T Consensus 15 ~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 15 PPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 489999999998888888888877763
No 11
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=28.57 E-value=53 Score=27.14 Aligned_cols=14 Identities=43% Similarity=0.650 Sum_probs=11.3
Q ss_pred CCCCCcccccCCCC
Q psy7112 279 DNINPVTGVYEPPK 292 (319)
Q Consensus 279 ~~INPITG~~e~~~ 292 (319)
=-=||+||.+.|+.
T Consensus 64 W~pDPvTGyyrPen 77 (93)
T PF03242_consen 64 WMPDPVTGYYRPEN 77 (93)
T ss_pred cccCCCCccccCCC
Confidence 35689999998775
No 12
>PF11521 TFIIE-A_C-term: C-terminal general transcription factor TFIIE alpha; InterPro: IPR021600 TFIIE is compiled of two subunits, alpha and beta. This family of proteins are the C-terminal domain of the alpha subunit of the protein which is the largest subunit and contains several functional domains which are important for basal transcription and cell growth. The C-terminal end of the protein binds directly to the amino-terminal PH domain of p62/Tfb1 (of IIH) which is involved in the recruitment of the general transcription factor IIH to the transcription preinitiation complex. P53 competes for the same binding site as TFIIE alpha which shows their structural similarity. Like p53, TFIIE alpha 336-439 can activate transcription in vivo []. ; PDB: 2RNR_A 2RNQ_A 2JTX_A.
Probab=27.89 E-value=43 Score=27.31 Aligned_cols=17 Identities=6% Similarity=0.065 Sum_probs=11.6
Q ss_pred CCCCChhhHhH-HHHHHH
Q psy7112 296 TQEHLRSTFET-VSLTSA 312 (319)
Q Consensus 296 ~e~MTeEEKE~-~~l~~~ 312 (319)
+..||++|||+ .+++..
T Consensus 62 V~qMT~~EKEaYi~v~Q~ 79 (86)
T PF11521_consen 62 VAQMTPEEKEAYIQVGQE 79 (86)
T ss_dssp HHHS-HHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHH
Confidence 57899999996 455444
No 13
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=27.69 E-value=80 Score=26.31 Aligned_cols=51 Identities=10% Similarity=0.001 Sum_probs=41.4
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHHHHHHHHHHH
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLVFNI 54 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~L~~~l~~~ 54 (319)
||+..| -.+|.+|.+..+.+-..+++.-...|..|...+ .--+++..|-.+
T Consensus 41 MDL~tI-~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~--~~~~~a~~L~~~ 91 (102)
T cd05501 41 MWLNKV-KERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD--DFGQVGITLEKK 91 (102)
T ss_pred CCHHHH-HHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHH
Confidence 899998 999999999999999999999988899998766 233555555443
No 14
>smart00297 BROMO bromo domain.
Probab=26.16 E-value=1.1e+02 Score=24.03 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=36.4
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhh
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDK 43 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~ 43 (319)
||+..| -++|++|.+..+.+...++..=...|..|...+..-
T Consensus 48 ~dl~~I-~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~~s~~ 89 (107)
T smart00297 48 MDLSTI-KKKLENGKYSSVEEFVADVQLMFSNAKTYNGPDSEV 89 (107)
T ss_pred CCHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 788888 999999999999999999998888888888766553
No 15
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=25.62 E-value=76 Score=23.18 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=18.2
Q ss_pred CCCCChhhHhHH--HHHHHhhhhhh
Q psy7112 296 TQEHLRSTFETV--SLTSAYSETVQ 318 (319)
Q Consensus 296 ~e~MTeEEKE~~--~l~~~~~~~~~ 318 (319)
++|-|+|||.+. .+.+++.++..
T Consensus 9 ~~Grs~EqK~~L~~~it~a~~~~~~ 33 (60)
T PRK02289 9 FEGRSQEQKNALAREVTEVVSRIAK 33 (60)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 568899999974 88888887653
No 16
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=25.12 E-value=1e+02 Score=25.24 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=36.4
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChh
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRD 42 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~ 42 (319)
||+..| -+++++|.+..+.+...+++.-...|..|...+..
T Consensus 42 mDL~tI-~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~ 82 (98)
T cd05513 42 MDFSTM-KEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTI 82 (98)
T ss_pred cCHHHH-HHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 788998 99999999999999999999888888888876654
No 17
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=24.29 E-value=60 Score=25.81 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=14.3
Q ss_pred hhhhHhhccccchhHHHH
Q psy7112 232 PARLIKYTGYGNAAGMLA 249 (319)
Q Consensus 232 ~~rfvk~~GYGnAAG~La 249 (319)
.+.++.++|||.++|.++
T Consensus 26 l~~~l~k~~~G~~~G~~~ 43 (75)
T PF04418_consen 26 LSDTLVKTGLGFGIGVVF 43 (75)
T ss_pred HHHHHHHHhhhhhHHHHH
Confidence 677888899999999433
No 18
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=23.00 E-value=1.5e+02 Score=24.69 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=33.5
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCC
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLD 40 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~ 40 (319)
||+..| ..+|++|.+..+.+-..+.+.-...|..|...+
T Consensus 44 mdL~tI-~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~ 82 (112)
T cd05528 44 MDLQTI-LQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDR 82 (112)
T ss_pred CCHHHH-HHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 889998 999999999999999999987777777777654
No 19
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=22.49 E-value=1.5e+02 Score=23.71 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=40.6
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHHHHHHHHHH
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLVFN 53 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~L~~~l~~ 53 (319)
||+..| -.+|++|.+..+.+-..+++.-...|..|...+..-. +.|..|-.
T Consensus 42 mdL~tI-~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~-~~a~~l~~ 92 (101)
T cd05509 42 MDLSTM-EEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYY-KCANKLEK 92 (101)
T ss_pred CCHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHH
Confidence 788888 9999999999999999999988888889988666433 44444433
No 20
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=21.61 E-value=1.4e+02 Score=24.37 Aligned_cols=52 Identities=10% Similarity=0.043 Sum_probs=41.8
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHHHHHHHHHHH
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLVFNI 54 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~L~~~l~~~ 54 (319)
||+..| -+.|+.|.+..+.+-..+++.-...|..|...+..-. .+|..+++.
T Consensus 43 mDL~tI-~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~-~~A~~l~~~ 94 (99)
T cd05508 43 MDLSTL-EKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLT-QAAKAIVKI 94 (99)
T ss_pred CCHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHH
Confidence 788998 9999999999999999999988888888887665432 456555544
No 21
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=21.08 E-value=40 Score=29.64 Aligned_cols=8 Identities=50% Similarity=1.020 Sum_probs=7.4
Q ss_pred CCCCCccc
Q psy7112 279 DNINPVTG 286 (319)
Q Consensus 279 ~~INPITG 286 (319)
-.+|||||
T Consensus 122 ~~~nPi~G 129 (142)
T PF02936_consen 122 MKVNPITG 129 (142)
T ss_dssp TTSSTTTT
T ss_pred cCCCCCCC
Confidence 58999999
No 22
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=20.40 E-value=88 Score=25.82 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=40.8
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHHHHHHHHHHH
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLVFNI 54 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~L~~~l~~~ 54 (319)
||+..| -..|++|.+..+.+...++..-...|..|...+..-. +.|..|-.+
T Consensus 47 mDL~tI-~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-~~a~~l~~~ 98 (108)
T cd05495 47 MDLSTI-RRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRKTSRVY-KYCTKLAEV 98 (108)
T ss_pred CCHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHH
Confidence 789998 9999999999999999999988888888887655432 345444443
Done!