Query psy7112
Match_columns 319
No_of_seqs 133 out of 169
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 18:28:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ej9_B Beta-subunit of trans-3 52.7 8.2 0.00028 29.4 2.5 23 296-318 8-32 (70)
2 3dai_A ATPase family AAA domai 50.9 16 0.00054 29.7 4.2 67 1-68 51-124 (130)
3 4hxt_A De novo protein OR329; 50.3 65 0.0022 26.4 8.0 153 49-234 5-162 (252)
4 2dkw_A Hypothetical protein KI 44.8 18 0.00063 29.7 3.7 68 1-69 48-122 (131)
5 3tt9_A Plakophilin-2; cell adh 38.7 83 0.0028 28.0 7.3 72 163-250 73-177 (233)
6 2kqz_A Proteasomal ubiquitin r 38.3 86 0.0029 26.7 7.0 68 174-251 52-119 (155)
7 2i7k_A Bromodomain-containing 36.6 21 0.00072 28.6 2.8 41 1-42 49-89 (117)
8 2dat_A Possible global transcr 36.4 32 0.0011 27.6 3.8 41 1-42 60-100 (123)
9 3ry0_A Putative tautomerase; o 34.5 24 0.00082 24.7 2.5 22 296-317 8-31 (65)
10 4b8j_A Importin subunit alpha- 33.5 3E+02 0.01 25.7 11.6 61 157-233 301-362 (528)
11 4db6_A Armadillo repeat protei 31.6 1.2E+02 0.0042 24.3 6.7 58 159-232 29-86 (210)
12 4db8_A Armadillo-repeat protei 29.2 1.3E+02 0.0045 24.8 6.7 185 8-234 18-214 (252)
13 3m20_A 4-oxalocrotonate tautom 28.1 44 0.0015 23.2 2.9 21 297-317 8-30 (62)
14 4db6_A Armadillo repeat protei 27.6 1.7E+02 0.0058 23.4 6.9 60 159-234 71-130 (210)
15 3m21_A Probable tautomerase HP 26.6 44 0.0015 23.4 2.8 20 298-317 13-34 (67)
16 1otf_A 4-oxalocrotonate tautom 25.6 45 0.0015 22.4 2.6 22 296-317 8-31 (62)
17 2opa_A Probable tautomerase YW 25.3 42 0.0014 22.6 2.4 22 296-317 8-31 (61)
18 3q2e_A Bromodomain and WD repe 24.6 58 0.002 26.0 3.4 38 1-39 51-88 (123)
19 4alg_A Bromodomain-containing 24.3 77 0.0026 26.5 4.3 41 1-42 75-115 (154)
20 3hme_A Bromodomain-containing 23.4 81 0.0028 25.2 4.1 53 1-55 54-106 (123)
21 2oss_A HUNK1 protein, bromodom 23.4 85 0.0029 25.3 4.3 49 1-51 64-112 (127)
22 3mb2_A 4-oxalocrotonate tautom 22.9 61 0.0021 23.1 2.9 22 296-317 9-32 (72)
23 2ouo_A HUNK1 protein, bromodom 22.9 75 0.0026 25.7 3.8 51 1-53 68-118 (130)
24 3mb4_A Protein polybromo-1; PB 22.8 93 0.0032 24.8 4.3 41 1-42 62-102 (124)
25 2d9e_A Peregrin; four-helix bu 22.4 83 0.0028 25.1 4.0 41 1-42 48-88 (121)
26 3jvl_A Bromodomain-containing 21.7 98 0.0034 24.4 4.2 41 1-42 55-95 (120)
27 4db8_A Armadillo-repeat protei 21.6 2.5E+02 0.0086 23.0 7.0 60 159-234 71-130 (252)
28 3p1f_A CREB-binding protein; s 21.4 52 0.0018 26.0 2.5 53 1-55 55-107 (119)
29 3iu5_A Protein polybromo-1; PB 21.2 93 0.0032 24.4 4.0 41 1-42 52-92 (116)
30 4hxt_A De novo protein OR329; 21.1 1.2E+02 0.0042 24.6 4.9 62 157-234 185-246 (252)
31 2z6h_A Catenin beta-1, beta-ca 21.0 1.2E+02 0.0041 29.8 5.6 35 203-237 501-535 (644)
32 2ri7_A Nucleosome-remodeling f 21.0 63 0.0021 27.0 3.1 53 1-55 113-165 (174)
33 2jvd_A UPF0291 protein YNZC; s 21.0 63 0.0021 23.4 2.6 19 297-315 20-39 (54)
34 2grc_A Probable global transcr 20.8 72 0.0025 25.7 3.3 41 1-42 59-99 (129)
35 3d7c_A General control of amin 20.3 78 0.0027 24.7 3.3 51 1-53 48-98 (112)
36 3mb3_A PH-interacting protein; 20.3 91 0.0031 25.1 3.8 38 1-39 62-99 (135)
No 1
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=52.71 E-value=8.2 Score=29.45 Aligned_cols=23 Identities=0% Similarity=0.017 Sum_probs=19.8
Q ss_pred CCCCChhhHhHH--HHHHHhhhhhh
Q psy7112 296 TQEHLRSTFETV--SLTSAYSETVQ 318 (319)
Q Consensus 296 ~e~MTeEEKE~~--~l~~~~~~~~~ 318 (319)
++|-|+|||++. .+.+++.+++.
T Consensus 8 ~EGRT~EQK~~lI~~VT~a~~eslg 32 (70)
T 3ej9_B 8 ATGLSVARKQQLIRDVIDVTNKSIG 32 (70)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHcC
Confidence 689999999984 89999988864
No 2
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=50.90 E-value=16 Score=29.72 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=52.5
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChh-------hHHHHHHHHHHHhcCCCCchhHHHHH
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRD-------KLDKLYSLVFNILCNPMYSECYIDCL 68 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~-------~r~~L~~~l~~~L~~~~~~~~~~~cL 68 (319)
||+..| -.+|+.|.+..+..-..+++.-...|..|...+.. .-..|...+-.++...+.+.....|=
T Consensus 51 mdL~tI-~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~~el~~~~~~~ce 124 (130)
T 3dai_A 51 MDLSSV-ISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCE 124 (130)
T ss_dssp CCHHHH-HHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCHHHH-HHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 889998 99999999999999999999988888888876532 22356666667777777777776663
No 3
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=50.32 E-value=65 Score=26.36 Aligned_cols=153 Identities=11% Similarity=0.089 Sum_probs=88.1
Q ss_pred HHHHHHhcCCCCchhHHHHHHHhhhhcCCCC-cchhhhcHHHHHHHHHhcCCCCCCCCCChHH-HHhhhhCCCC---chh
Q psy7112 49 SLVFNILCNPMYSECYIDCLSCLKLLFRDSK-YLDELISQERFNILLQTARLYNTQPTPSSLE-QLGSGAGEGE---SHN 123 (319)
Q Consensus 49 ~~l~~~L~~~~~~~~~~~cL~~lriLSRDk~-~L~~~~t~~~~~~L~~~A~l~~~~~~~~~v~-~l~~~l~~~~---~~~ 123 (319)
..|+.+|.++. +..+..++.+|+-|+++.. ....++....+..|.++..=. ..+++ ..-.+++... ++.
T Consensus 5 ~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~ 78 (252)
T 4hxt_A 5 EKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-----DSEVQKEAARALANIASGPDEA 78 (252)
T ss_dssp HHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcCChHH
Confidence 46788888776 7888999999999987664 555555556667776665421 01222 1111111111 011
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCccchhhHHHHHHHHHHhcHHHHHHHHhhcCCCCccccCCCCCCCcchh
Q psy7112 124 ADALLTIITYLHEELASRVPSPGTTPTSSSGTVDHILPVLHVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGDSLLS 203 (319)
Q Consensus 124 ~~~~L~l~~il~~~ll~~~p~~~~~~~~~~~l~e~l~PlL~lL~~~~~a~~~~Rk~lr~~lLP~~~Dr~~~pe~g~tLrs 203 (319)
.+.+...+. +.. |...+ .+.-.+...-.+.+|..++......++.+.. ...-.
T Consensus 79 ~~~~~~~~~-i~~-l~~ll---------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~i~ 131 (252)
T 4hxt_A 79 IKAIVDAGG-VEV-LVKLL---------TSTDSEVQKEAARALANIASGPDEAIKAIVD----------------AGGVE 131 (252)
T ss_dssp HHHHHHTTH-HHH-HHHHT---------TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH----------------TTHHH
T ss_pred HHHHHHCCC-HHH-HHHHH---------cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH----------------CCCHH
Confidence 111000011 111 11001 1112344566777888888655555555544 23456
Q ss_pred hHhhhccCCCcchHHHHHHHHHHHhcCChhh
Q psy7112 204 HLTRCLSSGNTMLRDCCADLLFVLCKENPAR 234 (319)
Q Consensus 204 rLlRLmT~~~~~lk~~vaelLFvLC~ed~~r 234 (319)
.|++++.++.+.++..++..|..||..+...
T Consensus 132 ~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 132 VLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 8899999998899999999999999876543
No 4
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.84 E-value=18 Score=29.67 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=54.3
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChh-------hHHHHHHHHHHHhcCCCCchhHHHHHH
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRD-------KLDKLYSLVFNILCNPMYSECYIDCLS 69 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~-------~r~~L~~~l~~~L~~~~~~~~~~~cL~ 69 (319)
||+..| -.+|+.|.+..+.....++..-...|..|...+.. .-..|.......+.+.+++.....|=+
T Consensus 48 mDL~tI-~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~l~~~f~~~~~~ 122 (131)
T 2dkw_A 48 MDLSTV-ITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELDPEFNKLCEE 122 (131)
T ss_dssp CCHHHH-HHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHHHSCTTTHHHHHH
T ss_pred cCHHHH-HHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899998 99999999999999999999999999999886542 223666667777877787777666643
No 5
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=38.75 E-value=83 Score=27.99 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcHHHHHHHHhhcCCCCccccCCCCCCCcchhhHhhhcc-CCCcchHHHHHHHHHHHhcCChhhh------
Q psy7112 163 LHVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLS-SGNTMLRDCCADLLFVLCKENPARL------ 235 (319)
Q Consensus 163 L~lL~~~~~a~~~~Rk~lr~~lLP~~~Dr~~~pe~g~tLrsrLlRLmT-~~~~~lk~~vaelLFvLC~ed~~rf------ 235 (319)
...|+.++..+..-|..+.. ..--..|++++. ++...++..++-.||.|+..+..|.
T Consensus 73 a~aL~nLa~~~~~nk~~I~~----------------~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~ 136 (233)
T 3tt9_A 73 CGALRNLVFEDNDNKLEVAE----------------LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEA 136 (233)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----------------TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHH----------------cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhcc
Q ss_pred ---------Hhhcccc-----------------chhHHHHH
Q psy7112 236 ---------IKYTGYG-----------------NAAGMLAA 250 (319)
Q Consensus 236 ---------vk~~GYG-----------------nAAG~La~ 250 (319)
+.+.|+. ||+|.|++
T Consensus 137 i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~n 177 (233)
T 3tt9_A 137 LLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRN 177 (233)
T ss_dssp HHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHH
No 6
>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A
Probab=38.25 E-value=86 Score=26.74 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCCCCccccCCCCCCCcchhhHhhhccCCCcchHHHHHHHHHHHhcCChhhhHhhccccchhHHHHHh
Q psy7112 174 KALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCADLLFVLCKENPARLIKYTGYGNAAGMLAAR 251 (319)
Q Consensus 174 ~~~Rk~lr~~lLP~~~Dr~~~pe~g~tLrsrLlRLmT~~~~~lk~~vaelLFvLC~ed~~rfvk~~GYGnAAG~La~r 251 (319)
..+++.|.. .||+..+. ..=+.-|.+++.+| +++.+++-|=..|-+....-++...|+...++-.++.
T Consensus 52 ~~~~~~L~~-~LP~~~~~-------~~~~e~L~~~l~SP--QF~Qal~~fs~AL~sG~l~~vl~qfgl~~~~~~~a~~ 119 (155)
T 2kqz_A 52 ADVQERLLP-YLPSGESL-------PQTADEIQNTLTSP--QFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANK 119 (155)
T ss_dssp HHHHHHHHH-HSCSSCCC-------CSSHHHHHSSCCSH--HHHHHHHHHHHHHHHTSSHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHh-hCCCCCCC-------CCCHHHHHHHHcCH--HHHHHHHHHHHHHHhCCcHHHHHHcCCChhhhhhhcc
Confidence 346666666 57876421 11344567777776 8999999999999999999999999998877655555
No 7
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=36.59 E-value=21 Score=28.63 Aligned_cols=41 Identities=10% Similarity=0.210 Sum_probs=37.3
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChh
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRD 42 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~ 42 (319)
||+..| -++|++|.+..+.+...+++.-.+.|..|...+..
T Consensus 49 MDL~tI-~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~ 89 (117)
T 2i7k_A 49 MDFSTM-KEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETI 89 (117)
T ss_dssp CCHHHH-HHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSS
T ss_pred CCHHHH-HHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 899998 99999999999999999999999999999886654
No 8
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.42 E-value=32 Score=27.61 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=37.4
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChh
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRD 42 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~ 42 (319)
||+..| -.+|+.|.+..+.+...+++.-...|..|...+..
T Consensus 60 mdL~tI-~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~ 100 (123)
T 2dat_A 60 VDFKKI-KERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQ 100 (123)
T ss_dssp CCHHHH-HHHHTTTCCCSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred CCHHHH-HHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 899998 99999999999999999999999999999886655
No 9
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=34.54 E-value=24 Score=24.66 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=18.0
Q ss_pred CCCCChhhHhHH--HHHHHhhhhh
Q psy7112 296 TQEHLRSTFETV--SLTSAYSETV 317 (319)
Q Consensus 296 ~e~MTeEEKE~~--~l~~~~~~~~ 317 (319)
++|.|+|||.++ .+++++.++.
T Consensus 8 ~~Grs~eqk~~L~~~it~~~~~~l 31 (65)
T 3ry0_A 8 LEGRSPQEVAALGEALTAAAHETL 31 (65)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHh
Confidence 468999999985 8888888764
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=33.52 E-value=3e+02 Score=25.71 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=41.1
Q ss_pred cchhhHHHHHHHHHHhcHHHHHHHHhhcCCCCccccCCCCCCCcchhhHhhhccCC-CcchHHHHHHHHHHHhcCChh
Q psy7112 157 DHILPVLHVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLSSG-NTMLRDCCADLLFVLCKENPA 233 (319)
Q Consensus 157 e~l~PlL~lL~~~~~a~~~~Rk~lr~~lLP~~~Dr~~~pe~g~tLrsrLlRLmT~~-~~~lk~~vaelLFvLC~ed~~ 233 (319)
+...+.+.+|..++......++.+-. ..+-..|++++.++ .+.++..++..|-.|+..+..
T Consensus 301 ~v~~~a~~~L~nl~~~~~~~~~~~~~----------------~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~ 362 (528)
T 4b8j_A 301 SVLIPALRTVGNIVTGDDAQTQCIID----------------HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 362 (528)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHT----------------TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHH----------------hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH
Confidence 55778888888888754444443322 13445778888888 678888888888888765543
No 11
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=31.57 E-value=1.2e+02 Score=24.32 Aligned_cols=58 Identities=19% Similarity=0.115 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHhcHHHHHHHHhhcCCCCccccCCCCCCCcchhhHhhhccCCCcchHHHHHHHHHHHhcCCh
Q psy7112 159 ILPVLHVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCADLLFVLCKENP 232 (319)
Q Consensus 159 l~PlL~lL~~~~~a~~~~Rk~lr~~lLP~~~Dr~~~pe~g~tLrsrLlRLmT~~~~~lk~~vaelLFvLC~ed~ 232 (319)
..-.+..|..++..+...++.+.. ...-..|++++.++.+.++..++..|..||..+.
T Consensus 29 ~~~a~~~L~~l~~~~~~~~~~i~~----------------~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 29 LQSALRKLSQIASGGNEQIQAVID----------------AGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHH----------------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH----------------cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 344556666666544444444443 2344589999999988999999999999996554
No 12
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=29.15 E-value=1.3e+02 Score=24.83 Aligned_cols=185 Identities=16% Similarity=0.169 Sum_probs=98.4
Q ss_pred HHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHH-----HHHHHHHHHhcCCCCchhHHHHHHHhhhhcCC-CCcc
Q psy7112 8 LMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLD-----KLYSLVFNILCNPMYSECYIDCLSCLKLLFRD-SKYL 81 (319)
Q Consensus 8 ~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~-----~L~~~l~~~L~~~~~~~~~~~cL~~lriLSRD-k~~L 81 (319)
+..|.++|.+....++.....--+. +.+.++ .....|+.+|.++. +..+..++.+|.-|+.+ ...-
T Consensus 18 ~~~L~s~~~~~~~~a~~~L~~~l~~-------~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 18 TQQLNSDDMQEQLSATRKFSQILSD-------GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp HHHHHSSCSSHHHHHHHHHHHHHHH-------HHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcC-------CCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 6777777776666655544211111 111222 34567888888776 77888899999988874 3333
Q ss_pred hhhhcHHHHHHHHHhcCCCCCCCCCChHH-HHhhhhCC---CCchhHHHHHH--HHHHHHHHHhhcCCCCCCCCCCCCCC
Q psy7112 82 DELISQERFNILLQTARLYNTQPTPSSLE-QLGSGAGE---GESHNADALLT--IITYLHEELASRVPSPGTTPTSSSGT 155 (319)
Q Consensus 82 ~~~~t~~~~~~L~~~A~l~~~~~~~~~v~-~l~~~l~~---~~~~~~~~~L~--l~~il~~~ll~~~p~~~~~~~~~~~l 155 (319)
..++....+..|.++..=. ...++ .--.++++ .+......+.. ....|-. ++ .+.-
T Consensus 90 ~~i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-lL------------~~~~ 151 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ-LL------------SSPN 151 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-GG------------GCSC
T ss_pred HHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHH-HH------------hCCC
Confidence 3333334555555544311 01222 00111111 11000011100 0111111 01 0111
Q ss_pred ccchhhHHHHHHHHHHhcHHHHHHHHhhcCCCCccccCCCCCCCcchhhHhhhccCCCcchHHHHHHHHHHHhcCChhh
Q psy7112 156 VDHILPVLHVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCADLLFVLCKENPAR 234 (319)
Q Consensus 156 ~e~l~PlL~lL~~~~~a~~~~Rk~lr~~lLP~~~Dr~~~pe~g~tLrsrLlRLmT~~~~~lk~~vaelLFvLC~ed~~r 234 (319)
.+.....+.+|..++..+...++.+.. ...-..|++++.++.+.++..++..|..||..+...
T Consensus 152 ~~v~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 214 (252)
T 4db8_A 152 EQILQEALWALSNIASGGNEQIQAVID----------------AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 214 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHH----------------TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHH----------------CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 234556677777887755444444432 234468999999999899999999999999776554
No 13
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=28.09 E-value=44 Score=23.21 Aligned_cols=21 Identities=19% Similarity=0.004 Sum_probs=17.4
Q ss_pred CCCChhhHhHH--HHHHHhhhhh
Q psy7112 297 QEHLRSTFETV--SLTSAYSETV 317 (319)
Q Consensus 297 e~MTeEEKE~~--~l~~~~~~~~ 317 (319)
++.|.|||.+. .+++++.++.
T Consensus 8 ~grt~eqK~~L~~~it~~~~~~l 30 (62)
T 3m20_A 8 PKLDVGKKREFVERLTSVAAEIY 30 (62)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Confidence 68999999974 8888888764
No 14
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=27.56 E-value=1.7e+02 Score=23.42 Aligned_cols=60 Identities=18% Similarity=0.113 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHHhcHHHHHHHHhhcCCCCccccCCCCCCCcchhhHhhhccCCCcchHHHHHHHHHHHhcCChhh
Q psy7112 159 ILPVLHVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCADLLFVLCKENPAR 234 (319)
Q Consensus 159 l~PlL~lL~~~~~a~~~~Rk~lr~~lLP~~~Dr~~~pe~g~tLrsrLlRLmT~~~~~lk~~vaelLFvLC~ed~~r 234 (319)
....+..|..++......++.+... ..-..|++++.++++.++..++..|..||..+...
T Consensus 71 ~~~a~~~L~~l~~~~~~~~~~i~~~----------------g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 130 (210)
T 4db6_A 71 LQEALWALSNIASGGNEQIQAVIDA----------------GALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130 (210)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHT----------------TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHC----------------CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHH
Confidence 3445556666665455555555431 23458999999999999999999999999876554
No 15
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=26.58 E-value=44 Score=23.44 Aligned_cols=20 Identities=0% Similarity=0.041 Sum_probs=16.9
Q ss_pred CCChhhHhHH--HHHHHhhhhh
Q psy7112 298 EHLRSTFETV--SLTSAYSETV 317 (319)
Q Consensus 298 ~MTeEEKE~~--~l~~~~~~~~ 317 (319)
+.|.|||.++ .+++++.++.
T Consensus 13 grs~eqK~~l~~~lt~~l~~~l 34 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKVL 34 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999985 8888888764
No 16
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=25.63 E-value=45 Score=22.43 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=17.5
Q ss_pred CCCCChhhHhHH--HHHHHhhhhh
Q psy7112 296 TQEHLRSTFETV--SLTSAYSETV 317 (319)
Q Consensus 296 ~e~MTeEEKE~~--~l~~~~~~~~ 317 (319)
++|.|+|||.++ .+++++.++.
T Consensus 8 ~~grs~e~k~~l~~~i~~~l~~~l 31 (62)
T 1otf_A 8 IEGRTDEQKETLIRQVSEAMANSL 31 (62)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHh
Confidence 357899999874 8888888764
No 17
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=25.27 E-value=42 Score=22.58 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=17.3
Q ss_pred CCCCChhhHhHH--HHHHHhhhhh
Q psy7112 296 TQEHLRSTFETV--SLTSAYSETV 317 (319)
Q Consensus 296 ~e~MTeEEKE~~--~l~~~~~~~~ 317 (319)
++|.|.|||.+. .+++++.+..
T Consensus 8 ~~grs~eqk~~l~~~i~~~l~~~l 31 (61)
T 2opa_A 8 LEGRTDEQKRNLVEKVTEAVKETT 31 (61)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHh
Confidence 357899999874 8888888764
No 18
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=24.55 E-value=58 Score=25.99 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=34.3
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCC
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTL 39 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~ 39 (319)
||+..| -.+|+.|.+..+.....++..-...|..|...
T Consensus 51 mdL~tI-~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 88 (123)
T 3q2e_A 51 MDFGTV-RETLDAGNYDSPLEFCKDIRLIFSNAKAYTPN 88 (123)
T ss_dssp CCHHHH-HHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 899998 99999999999999999999888888888764
No 19
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=24.28 E-value=77 Score=26.47 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=37.3
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChh
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRD 42 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~ 42 (319)
||+..| -.+|+.|.+..+.....+++.-...|+.|...+..
T Consensus 75 MDL~tI-~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~ 115 (154)
T 4alg_A 75 MDMGTI-KRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDD 115 (154)
T ss_dssp CCHHHH-HHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred CCHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 899998 99999999999999999999999999999886654
No 20
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=23.45 E-value=81 Score=25.20 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=41.6
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHHHHHHHHHHHh
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLVFNIL 55 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~L~~~l~~~L 55 (319)
||+..| -.+|+.|.+..+.+...+++.-...|..|...+..-. +.|..|....
T Consensus 54 mdL~tI-~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-~~A~~L~~~~ 106 (123)
T 3hme_A 54 MDFGTM-KDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYY-KLAKKILHAG 106 (123)
T ss_dssp CCHHHH-HHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-HHHHHHHHHH
T ss_pred CCHHHH-HHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHH
Confidence 889998 9999999999999999999999999999987655432 3444444433
No 21
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=23.39 E-value=85 Score=25.25 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=40.2
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHHHHHHHH
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLV 51 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~L~~~l 51 (319)
||+..| -.+|++|.+..+.+...++..-...|..|...+..-. +.|..|
T Consensus 64 mdL~tI-~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-~~A~~L 112 (127)
T 2oss_A 64 MDMGTI-KKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIV-LMAEAL 112 (127)
T ss_dssp CCHHHH-HHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHHH-HHHHHH
T ss_pred CCHHHH-HHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHH
Confidence 899998 9999999999999999999999999999987655433 344444
No 22
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=22.94 E-value=61 Score=23.09 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=17.6
Q ss_pred CCCCChhhHhHH--HHHHHhhhhh
Q psy7112 296 TQEHLRSTFETV--SLTSAYSETV 317 (319)
Q Consensus 296 ~e~MTeEEKE~~--~l~~~~~~~~ 317 (319)
.++.|+|+|+++ .+++++.++.
T Consensus 9 ~~grs~eqK~~L~~~it~~l~~~l 32 (72)
T 3mb2_A 9 LEGRSTEQKAELARALSAAAAAAF 32 (72)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHh
Confidence 357999999985 8888888764
No 23
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=22.93 E-value=75 Score=25.70 Aligned_cols=51 Identities=12% Similarity=0.159 Sum_probs=41.1
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHHHHHHHHHH
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLVFN 53 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~L~~~l~~ 53 (319)
||+..| -.+|++|.+..+.....+++.-...|..|...+..-. +.|..|-.
T Consensus 68 mDL~tI-~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~-~~A~~L~~ 118 (130)
T 2ouo_A 68 MDMSTI-KSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVV-AMARKLQD 118 (130)
T ss_dssp CCHHHH-HHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-HHHHHHHH
T ss_pred CCHHHH-HHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHHHH
Confidence 899998 9999999999999999999999999999988665422 34444433
No 24
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=22.77 E-value=93 Score=24.77 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=36.6
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChh
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRD 42 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~ 42 (319)
||+..| -++|+.|.+..+.+...+++.-...|..|...+..
T Consensus 62 mdL~tI-~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~ 102 (124)
T 3mb4_A 62 MDMEKI-RSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESL 102 (124)
T ss_dssp CCHHHH-HHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred CCHHHH-HHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 899998 99999999999999999999988899999875554
No 25
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.44 E-value=83 Score=25.10 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=37.1
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChh
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRD 42 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~ 42 (319)
||+..| -.+|++|.+..+.+...+++.-...|..|...+..
T Consensus 48 mdL~tI-~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 88 (121)
T 2d9e_A 48 MDFFTM-KQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTI 88 (121)
T ss_dssp CCHHHH-HHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred cCHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 899998 99999999999999999999999999999886654
No 26
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=21.73 E-value=98 Score=24.38 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=36.8
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChh
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRD 42 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~ 42 (319)
||+..| -.+|++|.+..+.....+++.-...|..|...+..
T Consensus 55 mdl~tI-~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~ 95 (120)
T 3jvl_A 55 MDMSTI-KSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHE 95 (120)
T ss_dssp CCHHHH-HHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred CCHHHH-HHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 889998 99999999999999999999999999999876554
No 27
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=21.61 E-value=2.5e+02 Score=23.04 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHhcHHHHHHHHhhcCCCCccccCCCCCCCcchhhHhhhccCCCcchHHHHHHHHHHHhcCChhh
Q psy7112 159 ILPVLHVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCADLLFVLCKENPAR 234 (319)
Q Consensus 159 l~PlL~lL~~~~~a~~~~Rk~lr~~lLP~~~Dr~~~pe~g~tLrsrLlRLmT~~~~~lk~~vaelLFvLC~ed~~r 234 (319)
....+.+|..++......|..+.. ...-..|++++.++.+.++..++..|..||..+..+
T Consensus 71 ~~~a~~~L~~l~~~~~~~~~~i~~----------------~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 130 (252)
T 4db8_A 71 LQEALWALSNIASGGNEQIQAVID----------------AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHH----------------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH----------------cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH
Confidence 344555566666544445555443 123457899999988899999999999999887765
No 28
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=21.36 E-value=52 Score=26.01 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=41.2
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHHHHHHHHHHHh
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLVFNIL 55 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~L~~~l~~~L 55 (319)
||+..| -.+|+.|.+..+.....++..-...|..|...+..- .+.|..|-.+.
T Consensus 55 mdl~tI-~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i-~~~A~~L~~~f 107 (119)
T 3p1f_A 55 MDLSTI-KRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRV-YKFCSKLAEVF 107 (119)
T ss_dssp CCHHHH-HHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHH-HHHHHHHHHHH
T ss_pred CCHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHH
Confidence 889998 999999999999999999999888899888755432 23444444443
No 29
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=21.22 E-value=93 Score=24.43 Aligned_cols=41 Identities=10% Similarity=0.134 Sum_probs=36.9
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChh
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRD 42 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~ 42 (319)
||+..| -++|++|.+..+.....+++.-...|..|...+..
T Consensus 52 mdL~tI-~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~ 92 (116)
T 3iu5_A 52 IDLMKI-QQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSP 92 (116)
T ss_dssp CCHHHH-HHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred CCHHHH-HHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 889998 99999999999999999999999999999876654
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=21.14 E-value=1.2e+02 Score=24.64 Aligned_cols=62 Identities=11% Similarity=0.027 Sum_probs=45.3
Q ss_pred cchhhHHHHHHHHHHhcHHHHHHHHhhcCCCCccccCCCCCCCcchhhHhhhccCCCcchHHHHHHHHHHHhcCChhh
Q psy7112 157 DHILPVLHVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCADLLFVLCKENPAR 234 (319)
Q Consensus 157 e~l~PlL~lL~~~~~a~~~~Rk~lr~~lLP~~~Dr~~~pe~g~tLrsrLlRLmT~~~~~lk~~vaelLFvLC~ed~~r 234 (319)
+.....+.+|..++..+...++.+.. ...-..|++++.+..+.++..+...|..|+......
T Consensus 185 ~v~~~a~~~L~~l~~~~~~~~~~l~~----------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 185 EVQKEAARALANIASGPTSAIKAIVD----------------AGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHHHHHHHTTSBHHHHHHHHH----------------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH----------------CCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 44556667777777655555555554 245568999999998899999999999998876543
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=21.04 E-value=1.2e+02 Score=29.77 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=29.6
Q ss_pred hhHhhhccCCCcchHHHHHHHHHHHhcCChhhhHh
Q psy7112 203 SHLTRCLSSGNTMLRDCCADLLFVLCKENPARLIK 237 (319)
Q Consensus 203 srLlRLmT~~~~~lk~~vaelLFvLC~ed~~rfvk 237 (319)
.+|++++.++.+.++..++..|..|.......+.+
T Consensus 501 ~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 535 (644)
T 2z6h_A 501 APLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKK 535 (644)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhc
Confidence 48999999999999999999999998876554444
No 32
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=21.02 E-value=63 Score=26.96 Aligned_cols=53 Identities=8% Similarity=0.074 Sum_probs=42.1
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHHHHHHHHHHHh
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLVFNIL 55 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~L~~~l~~~L 55 (319)
||+..| -++|++|.+..+.+-..+++.-...+..|...+..- .+.|..|-.+.
T Consensus 113 mdL~tI-~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~-~~~A~~L~~~f 165 (174)
T 2ri7_A 113 MDLATM-EERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPF-YQCAEVLESFF 165 (174)
T ss_dssp CCHHHH-HHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHH-HHHHHHHHHHH
T ss_pred CCHHHH-HHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHH
Confidence 899998 999999999999999999999888888888766542 24555554443
No 33
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=20.95 E-value=63 Score=23.39 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=12.6
Q ss_pred CCCChhhH-hHHHHHHHhhh
Q psy7112 297 QEHLRSTF-ETVSLTSAYSE 315 (319)
Q Consensus 297 e~MTeEEK-E~~~l~~~~~~ 315 (319)
.|+|+||| |+..|=..|=+
T Consensus 20 ~gLT~eEk~EQ~~LR~eYl~ 39 (54)
T 2jvd_A 20 GVITEEEKAEQQKLRQEYLK 39 (54)
T ss_dssp TCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 58999987 56666554433
No 34
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=20.76 E-value=72 Score=25.74 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=36.9
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChh
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRD 42 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~ 42 (319)
||+..| -.+|+.|.+..+.....++..-...|..|...+..
T Consensus 59 mdL~tI-~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~ 99 (129)
T 2grc_A 59 VDFKKI-KERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSL 99 (129)
T ss_dssp CCHHHH-HHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred CCHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 899998 99999999999999999999999999999886654
No 35
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=20.33 E-value=78 Score=24.71 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=40.8
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHHHHHHHHHH
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLVFN 53 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~L~~~l~~ 53 (319)
||+..| -.+|++|.+..+.+...++..-...|..|...+..-. +.|..|-.
T Consensus 48 mdL~tI-~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~-~~A~~L~~ 98 (112)
T 3d7c_A 48 IDLKTM-TERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYC-RCASALEK 98 (112)
T ss_dssp CCHHHH-HHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-HHHHHHHH
T ss_pred cCHHHH-HHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHH
Confidence 899998 9999999999999999999998899999988655422 34444433
No 36
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=20.30 E-value=91 Score=25.15 Aligned_cols=38 Identities=24% Similarity=0.159 Sum_probs=34.8
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCC
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTL 39 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~ 39 (319)
||+..| -.+|+.|.+..+.....++..-...|..|...
T Consensus 62 mdl~tI-~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 99 (135)
T 3mb3_A 62 MDFATV-RETLEAGNYESPMELCKDVRLIFSNSKAYTPS 99 (135)
T ss_dssp CCHHHH-HHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred cCHHHH-HHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 899998 99999999999999999999988889888875
Done!