Query psy7112
Match_columns 319
No_of_seqs 133 out of 169
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 18:28:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7112.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7112hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s0ya_ d.80.1.1 (A:) Trans-3- 50.7 4.4 0.00032 27.4 2.5 23 296-318 8-32 (62)
2 d1xm9a1 a.118.1.24 (A:244-700) 45.1 9.4 0.00068 30.9 4.1 32 199-231 2-33 (457)
3 d1otfa_ d.80.1.1 (A:) 4-oxaloc 39.2 9 0.00066 25.3 2.6 22 296-317 8-31 (59)
4 d1gyxa_ d.80.1.1 (A:) 4-oxaloc 35.3 13 0.00093 26.4 3.0 23 296-318 8-33 (76)
5 d1xm9a1 a.118.1.24 (A:244-700) 35.2 24 0.0018 28.3 5.2 55 163-233 23-77 (457)
6 d1zaka2 g.41.2.1 (A:128-158) M 28.1 6.8 0.0005 24.0 0.3 13 279-291 2-14 (31)
7 d1xqra1 a.118.1.21 (A:87-350) 26.6 55 0.004 26.0 6.1 56 162-233 37-92 (264)
8 d2ooca1 a.24.10.6 (A:8-111) Hi 26.3 42 0.003 24.3 4.7 49 1-51 3-51 (104)
9 d3d7ca1 a.29.2.1 (A:731-832) G 25.5 29 0.0021 25.0 3.6 51 1-53 43-93 (102)
10 d1xqra1 a.118.1.21 (A:87-350) 24.5 75 0.0055 25.1 6.5 63 159-237 161-223 (264)
11 d1v54d_ f.23.1.1 (D:) Mitochon 24.2 25 0.0018 28.0 3.2 9 279-287 123-131 (144)
12 d1eqfa1 a.29.2.1 (A:1359-1497) 24.2 27 0.002 26.7 3.4 53 1-55 67-119 (139)
13 d1e6ia_ a.29.2.1 (A:) GCN5 {Ba 20.5 37 0.0027 24.8 3.4 52 1-54 44-95 (111)
No 1
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=50.73 E-value=4.4 Score=27.37 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=19.3
Q ss_pred CCCCChhhHhHH--HHHHHhhhhhh
Q psy7112 296 TQEHLRSTFETV--SLTSAYSETVQ 318 (319)
Q Consensus 296 ~e~MTeEEKE~~--~l~~~~~~~~~ 318 (319)
++|.|.|||.++ .+.+++.++..
T Consensus 8 ~~Grt~eqK~~l~~~it~~~~~~~g 32 (62)
T d1s0ya_ 8 RYGRTDEQKRALSAGLLRVISEATG 32 (62)
T ss_dssp ETTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 578999999985 89999988753
No 2
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.07 E-value=9.4 Score=30.94 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=27.8
Q ss_pred CcchhhHhhhccCCCcchHHHHHHHHHHHhcCC
Q psy7112 199 DSLLSHLTRCLSSGNTMLRDCCADLLFVLCKEN 231 (319)
Q Consensus 199 ~tLrsrLlRLmT~~~~~lk~~vaelLFvLC~ed 231 (319)
-+++ .|+.++.++++.++..++.+|-.||.+|
T Consensus 2 ~~ip-~lv~~L~~~~~~~~~~a~~~l~~l~~~~ 33 (457)
T d1xm9a1 2 LTIP-KAVQYLSSQDEKYQAIGAYYIQHTCFQD 33 (457)
T ss_dssp CCHH-HHHHHHHSSCTHHHHHHHHHHHHHTSSC
T ss_pred CCHH-HHHHHhCCCCHHHHHHHHHHHHHHHcCC
Confidence 3444 7999999999999999999999999654
No 3
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]}
Probab=39.16 E-value=9 Score=25.35 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=18.3
Q ss_pred CCCCChhhHhHH--HHHHHhhhhh
Q psy7112 296 TQEHLRSTFETV--SLTSAYSETV 317 (319)
Q Consensus 296 ~e~MTeEEKE~~--~l~~~~~~~~ 317 (319)
++|.|.|||.+. .+++++.++.
T Consensus 8 ~~Grs~eqK~~l~~~it~~~~~~~ 31 (59)
T d1otfa_ 8 IEGRTDEQKETLIRQVSEAMANSL 31 (59)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHh
Confidence 578999999984 8899988765
No 4
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE {Escherichia coli [TaxId: 562]}
Probab=35.28 E-value=13 Score=26.44 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=17.7
Q ss_pred CCC-CChhhHhHH--HHHHHhhhhhh
Q psy7112 296 TQE-HLRSTFETV--SLTSAYSETVQ 318 (319)
Q Consensus 296 ~e~-MTeEEKE~~--~l~~~~~~~~~ 318 (319)
.+| +|+|||+++ .+.++|.++..
T Consensus 8 ~~g~lT~EQK~~L~~~iT~a~~~~lg 33 (76)
T d1gyxa_ 8 FPRELDEQQKAALAADITDVIIRHLN 33 (76)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 356 599999874 88888888753
No 5
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.19 E-value=24 Score=28.29 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcHHHHHHHHhhcCCCCccccCCCCCCCcchhhHhhhccCCCcchHHHHHHHHHHHhcCChh
Q psy7112 163 LHVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCADLLFVLCKENPA 233 (319)
Q Consensus 163 L~lL~~~~~a~~~~Rk~lr~~lLP~~~Dr~~~pe~g~tLrsrLlRLmT~~~~~lk~~vaelLFvLC~ed~~ 233 (319)
...|..+|..++..|+.++.. ..+ ..|+++|.++.+.++..++..|..||..+..
T Consensus 23 ~~~l~~l~~~~~~~~~~i~~~---------------g~i-~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~ 77 (457)
T d1xm9a1 23 AYYIQHTCFQDESAKQQVYQL---------------GGI-CKLVDLLRSPNQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp HHHHHHHTSSCSSHHHHHHHT---------------THH-HHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHC---------------CcH-HHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 344555555555566666541 234 4789999999999999999999999966543
No 6
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=28.09 E-value=6.8 Score=23.99 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=9.9
Q ss_pred CCCCCcccccCCC
Q psy7112 279 DNINPVTGVYEPP 291 (319)
Q Consensus 279 ~~INPITG~~e~~ 291 (319)
+.+||+||.+.--
T Consensus 2 RR~DP~TG~iYH~ 14 (31)
T d1zaka2 2 RRLDPVTGKIYHL 14 (31)
T ss_dssp EEECTTTCCEEES
T ss_pred CcCCCCCCcEeEE
Confidence 4689999998443
No 7
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.56 E-value=55 Score=25.96 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcHHHHHHHHhhcCCCCccccCCCCCCCcchhhHhhhccCCCcchHHHHHHHHHHHhcCChh
Q psy7112 162 VLHVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCADLLFVLCKENPA 233 (319)
Q Consensus 162 lL~lL~~~~~a~~~~Rk~lr~~lLP~~~Dr~~~pe~g~tLrsrLlRLmT~~~~~lk~~vaelLFvLC~ed~~ 233 (319)
.+..|..+++.....|.+.+. ..+.--+.++++++++.+|..++..+..+|..|+.
T Consensus 37 Al~~L~~L~~~~d~a~~l~~~----------------gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~ 92 (264)
T d1xqra1 37 ALELLADLCENMDNAADFCQL----------------SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA 92 (264)
T ss_dssp HHHHHHHHHTSHHHHHHHHHT----------------THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCHHHHHHHHHc----------------CCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 567778888765666666664 24444455788888899999999999999988764
No 8
>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]}
Probab=26.31 E-value=42 Score=24.27 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=33.5
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHHHHHHHH
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLV 51 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~L~~~l 51 (319)
+|.+. +..+-+||.+-+...|..|.++......--..+.+..++.+..|
T Consensus 3 iD~~~--L~~~~ggd~~l~~~ll~~F~e~~~~~~~~l~~d~~~~~~~aH~L 51 (104)
T d2ooca1 3 VDFAY--LEGFAAGDFAVVDEVLALFREQAALWAPMLDPTHPGWKDAVHTV 51 (104)
T ss_dssp SCHHH--HHHHTTTCHHHHHHHHHHHHHHHHHHGGGCSTTSTTHHHHHHHH
T ss_pred cCHHH--HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 36666 78888999999999999999877754432233444444555444
No 9
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.46 E-value=29 Score=25.02 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=39.8
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHHHHHHHHHH
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLVFN 53 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~L~~~l~~ 53 (319)
||+..| -++|++|.+..+.+...++..-...|..|...+..-. +.|..|-+
T Consensus 43 mdL~tI-~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-~~A~~l~~ 93 (102)
T d3d7ca1 43 IDLKTM-TERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYC-RCASALEK 93 (102)
T ss_dssp CCHHHH-HHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-HHHHHHHH
T ss_pred cCHHHH-HHHhccCccCCHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHH
Confidence 889998 9999999999999999999988888888876554422 34444433
No 10
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.47 E-value=75 Score=25.10 Aligned_cols=63 Identities=10% Similarity=0.139 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHhcHHHHHHHHhhcCCCCccccCCCCCCCcchhhHhhhccCCCcchHHHHHHHHHHHhcCChhhhHh
Q psy7112 159 ILPVLHVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCADLLFVLCKENPARLIK 237 (319)
Q Consensus 159 l~PlL~lL~~~~~a~~~~Rk~lr~~lLP~~~Dr~~~pe~g~tLrsrLlRLmT~~~~~lk~~vaelLFvLC~ed~~rfvk 237 (319)
..-.+.+|..++..+...+..+.. .+.-..|+.+++++++.++..+...|..|+..++...-.
T Consensus 161 ~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 223 (264)
T d1xqra1 161 KVKSAFLLQNLLVGHPEHKGTLCS----------------MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRE 223 (264)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHH----------------TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHH----------------hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 444566666666644444444433 234468999999999999999999999999887665543
No 11
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.23 E-value=25 Score=28.05 Aligned_cols=9 Identities=22% Similarity=0.667 Sum_probs=7.8
Q ss_pred CCCCCcccc
Q psy7112 279 DNINPVTGV 287 (319)
Q Consensus 279 ~~INPITG~ 287 (319)
-.+|||||-
T Consensus 123 ~~~nPitG~ 131 (144)
T d1v54d_ 123 MKVAPIQGF 131 (144)
T ss_dssp TTSSTTTTS
T ss_pred cCCCCCCCc
Confidence 589999995
No 12
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.21 E-value=27 Score=26.72 Aligned_cols=53 Identities=11% Similarity=0.106 Sum_probs=41.7
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHHHHHHHHHHHh
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLVFNIL 55 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~L~~~l~~~L 55 (319)
||+..| -++|++|.+..+.+.+.++..-...|..|...+.. -.+.|..|..+.
T Consensus 67 mdL~tI-~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~-i~~~A~~L~~~~ 119 (139)
T d1eqfa1 67 MDLQTL-RENVRKRLYPSREEFREHLELIVKNSATYNGPKHS-LTQISQSMLDLC 119 (139)
T ss_dssp CCHHHH-HHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTSH-HHHHHHHHHHHH
T ss_pred hhHHHH-HHHHHcCCcCCHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHH
Confidence 899998 99999999999999999999988888888875543 334555554443
No 13
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.45 E-value=37 Score=24.77 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=40.3
Q ss_pred CchhhhHHHHHhcCChhhHHHHHHHHhhhcccccccCCCChhhHHHHHHHHHHH
Q psy7112 1 MDAQQFLLMRLESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLVFNI 54 (319)
Q Consensus 1 md~~~~~~~~l~~~~~~~i~~~l~~fn~~~~~~f~F~~~~~~~r~~L~~~l~~~ 54 (319)
||+..| -++|++|.+..+.+...++..-...|..|...+..- .+.|..|-.+
T Consensus 44 mdL~tI-~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~i-~~~A~~l~~~ 95 (111)
T d1e6ia_ 44 MDLSTM-EIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSY-YKYANRLEKF 95 (111)
T ss_dssp CCHHHH-HHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHH-HHHHHHHHHH
T ss_pred hhHHHH-HHHHHccccchHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHH
Confidence 889998 999999999999999999998888888887755432 2344444433
Done!