RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7112
(319 letters)
>gnl|CDD|220610 pfam10165, Ric8, Guanine nucleotide exchange factor synembryn.
Ric8 is involved in the EGL-30 neurotransmitter
signalling pathway. It is a guanine nucleotide exchange
factor that regulates neurotransmitter secretion.
Length = 439
Score = 166 bits (423), Expect = 4e-48
Identities = 67/138 (48%), Positives = 92/138 (66%)
Query: 161 PVLHVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCC 220
P+L +L++ R + +R+ +R +LP D RPE+GD+L S L R ++S +T L+D
Sbjct: 261 PLLTLLTKIYRAAEPVRKYLRALLLPPLEDRKKRPEKGDTLRSRLLRLMTSPDTDLKDAA 320
Query: 221 ADLLFVLCKENPARLIKYTGYGNAAGMLAARGLLGCQNKGQYSSSSEESDTEEYLRVKDN 280
++LLFVLCKE+ +R IKY GYGNAAG+LA RGLLG G+ SS E+SDTEEY K
Sbjct: 321 SELLFVLCKEDASRFIKYIGYGNAAGLLANRGLLGPGRAGEAYSSDEDSDTEEYKSAKRA 380
Query: 281 INPVTGVYEPPKPDSTQE 298
INP+TG EP + + E
Sbjct: 381 INPITGQVEPAEKPNPME 398
Score = 28.4 bits (64), Expect = 5.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 67 CLSCLKLLFRDSKYLDELISQERFNILLQTARLYNTQPTPSSLEQL 112
CL LK+L RD + L+ + ++E + L + A L + S +
Sbjct: 1 CLETLKILSRDPRGLEPIYTKEGLDTLARHAGLLSVVFDSPSEDVR 46
>gnl|CDD|118278 pfam09746, Membralin, Tumour-associated protein. Membralin is
evolutionarily highly conserved; though it seems to
represent a unique protein family. The protein appears
to contain several transmembrane regions. In humans it
is expressed in certain cancers, particularly ovarian
cancers. Membralin-like gene homologues have been
identified in plants including grape, cotton and tomato.
Length = 375
Score = 32.2 bits (73), Expect = 0.32
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 258 NKGQYSSSSEESDTEEYLRVKDNINPVT--GVYEPPKPDSTQEHLRSTFETVSLTSAYS 314
K Y + + ++ N + G+ P + E L F+ ++ YS
Sbjct: 106 LKDSYYYGIGPQTRQNHETLERYQNILGKLGLPVRPTFAYSNESLYYYFDAENILDTYS 164
>gnl|CDD|100075 cd02646, R3H_G-patch, R3H domain of a group of fungal and plant
proteins with unknown function, who also contain a
G-patch domain. The name of the R3H domain comes from
the characteristic spacing of the most conserved
arginine and histidine residues. The function of the
R3H domain is predicted to bind ssDNA or ssRNA in a
sequence-specific manner.
Length = 58
Score = 28.3 bits (64), Expect = 0.70
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 16 LSNIKNALKTFIEANSDSFTFPTLD 40
+ +IK+ ++ F+ + DS +FP +D
Sbjct: 1 IEDIKDEIEAFLLDSRDSLSFPPMD 25
>gnl|CDD|240170 cd05147, RIO1_euk, RIO kinase family; eukaryotic RIO1, catalytic
domain. The RIO kinase catalytic domain family is part
of a larger superfamily, that includes the catalytic
domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase (PI3K). RIO kinases are
atypical protein serine kinases containing a kinase
catalytic signature, but otherwise show very little
sequence similarity to typical PKs. Serine kinases
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine residues in protein substrates. The RIO
catalytic domain is truncated compared to the catalytic
domains of typical PKs, with deletions of the loops
responsible for substrate binding. RIO1 is present in
archaea, bacteria and eukaryotes. This subfamily is
composed of RIO1 proteins from eukaryotes. RIO1 is
essential for survival and is required for 18S rRNA
processing, proper cell cycle progression and chromosome
maintenance. The biological substrates for RIO1 are
unknown.
Length = 190
Score = 28.4 bits (64), Expect = 4.3
Identities = 9/41 (21%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 60 YSECYIDCLSCLKLLFRDSKYLDELISQERFNILLQTARLY 100
E Y+ + +++L++D + + +S+ +N+L +LY
Sbjct: 119 ARELYLQVIQIMRILYQDCRLVHADLSE--YNLLYHDGKLY 157
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein;
Provisional.
Length = 2102
Score = 28.5 bits (64), Expect = 6.1
Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 17/132 (12%)
Query: 112 LGSGAGEGESHNADALLTIITYLH--EELASRVPSPGTTP------TSSSGTVDHILPVL 163
L G EG+ + A AL ++ + + L V GT S+ L
Sbjct: 744 LREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEAL 803
Query: 164 HVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCADL 223
L+ AR N P + P L L RCL+ G+ +++D ++
Sbjct: 804 EALALLARTKGG-----ANFSHPPWAVLAEVPSS----LEPLVRCLAEGHPLVQDKAIEI 854
Query: 224 LFVLCKENPARL 235
L LC++ P L
Sbjct: 855 LSRLCRDQPVVL 866
>gnl|CDD|227285 COG4949, COG4949, Uncharacterized membrane-anchored protein
conserved in bacteria [Function unknown].
Length = 424
Score = 28.3 bits (63), Expect = 6.3
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 109 LEQLGSGAGEGESHNADALLTIITYLHEELASRVPSP----GTTPTSSSGTVDHILPVLH 164
L + GE ++ ALL +T L EL +R G + ++ +
Sbjct: 224 LASITQRMKTGERRDSQALLAELTRLAAELEARAALSLYRFGASRAYDGIVLERL----E 279
Query: 165 VLSE-AARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTR 207
L E H+ + + ++ PA R S E +L L R
Sbjct: 280 ALRETPVPGHETMGEFLERRLAPAMRTCQSVEERQANLSRKLAR 323
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like
deacetylases, classII. This subfamily includes
eukaryotic as well as bacterial Class II histone
deacetylase (HDAC) and related proteins. Deacetylases of
class II are Zn-dependent enzymes that catalyze
hydrolysis of N(6)-acetyl-lysine residues of histones
(EC 3.5.1.98) and possibly other proteins to yield
deacetylated histones/other proteins. In D. discoideum,
where four homologs (HdaA, HdaB, HdaC, HdaD) have been
identified, HDAC activity is important for regulating
the timing of gene expression during development. Also,
inhibition of HDAC activity by trichostatin A is shown
to cause hyperacetylation of the histone and a delay in
cell aggregation and differentiation.
Length = 288
Score = 27.9 bits (63), Expect = 6.3
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 145 PGTTPTSSSGTVDHILPVLHVLSEAARHHKALRRLIRNQILPARRDFSSRPE 196
PGT +G +I+ +V A R + ++ LPA F +P+
Sbjct: 173 PGTGAPDETG-HGNIV---NVPLPAGTGGAEFREAVEDRWLPALDAF--KPD 218
>gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA,
catalyzes the hydrolysis of the N-acetyl group of
N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to
glucosamine 6-phosphate and acetate. This is the first
committed step in the biosynthetic pathway to
amino-sugar-nucleotides, which is needed for cell wall
peptidoglycan and teichoic acid biosynthesis.
Deacetylation of N-acetylglucosamine is also important
in lipopolysaccharide synthesis and cell wall recycling.
Length = 374
Score = 27.5 bits (62), Expect = 9.1
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 123 NADALLTIITYLHEELASRVPSPGTT---PTSSSGTVDHILPVLHVLSEAARHHK 174
A+AL TI L + GTT PT+ + + I L ++EA +
Sbjct: 70 TAEALKTIAEALAKH--------GTTSFLPTTVTAPPEEIAKALAAIAEAIAEGQ 116
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.379
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,962,338
Number of extensions: 1522583
Number of successful extensions: 1286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1286
Number of HSP's successfully gapped: 19
Length of query: 319
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 222
Effective length of database: 6,635,264
Effective search space: 1473028608
Effective search space used: 1473028608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)