RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7112
(319 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 3e-10
Identities = 50/368 (13%), Positives = 106/368 (28%), Gaps = 129/368 (35%)
Query: 5 QFLLMRLESGNLSN----IKNALKTFIEA---NSD--SF--TFPTLDRDKLDKLYSLVFN 53
++ +E + + L F +D + + L K L+
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI-- 123
Query: 54 ILCNPMYSECYIDCLSCLK---------LLFRDSK------------------YLDELIS 86
+ YI K LFR Y +EL
Sbjct: 124 --------KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-- 173
Query: 87 QERFNI-------LLQTARLYNTQPTPSSLEQLGSGAGEGESHNADALLTIITYLHEELA 139
++ + L++ + +L +L + E L I+ +L
Sbjct: 174 RDLYQTYHVLVGDLIKFSA--------ETLSELIRTTLDAEKVFTQGL-NILEWLEN--P 222
Query: 140 SRVPSPG---TTPTSSSGTVDHILPVLHVLSEA-----AR----HHKALRRLIR------ 181
S P + P S P++ V+ A A+ LR ++
Sbjct: 223 SNTPDKDYLLSIPIS--------CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 182 NQILPARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCADLLFVL---CKEN------P 232
++ A + + +S + + ++ +LF + C E P
Sbjct: 275 QGLVTAV--AIAETDSWESFFVSVRKAIT------------VLFFIGVRCYEAYPNTSLP 320
Query: 233 ARLIKYT---GYGNAAGMLAARGLLGCQNKGQYSSSSEESDTEEYLRVKDNIN-P----V 284
+++ + G + ML+ L Q + + ++ + + + +N V
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVV 379
Query: 285 TGVYEPPK 292
+G PP+
Sbjct: 380 SG---PPQ 384
Score = 49.3 bits (117), Expect = 1e-06
Identities = 52/328 (15%), Positives = 93/328 (28%), Gaps = 123/328 (37%)
Query: 22 ALKTFIEANSDSFTFPTLDRDKLDKLYSLVFNILCNP---------------------MY 60
A + A D+ T LD +V N NP M
Sbjct: 1642 AQDVWNRA--DNHFKDTYGFSILD----IVIN---NPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 61 SECYIDCLSCLKLLFRDSKYLDELISQERFN----ILLQTARLYNTQPTPSSLEQLGSGA 116
E +D + +F++ ++E + F +L T TQP
Sbjct: 1693 FETIVDGKLKTEKIFKE---INEHSTSYTFRSEKGLLSATQ---FTQP------------ 1734
Query: 117 GEGESHNADALLTIITYLHEELASRVPSPGTTPTSSS--GTVDHILPVLHVLSE-AARHH 173
AL + E+L S+ G P ++ G H L E AA
Sbjct: 1735 ---------ALTLMEKAAFEDLKSK----GLIPADATFAG---------HSLGEYAALAS 1772
Query: 174 KA----LRRLIRNQILPAR----RDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCADLLF 225
A + L+ ++ R + R E G S + + + L
Sbjct: 1773 LADVMSIESLVE--VVFYRGMTMQVAVPRDELGRSNYG---MIAINPGRVAASFSQEALQ 1827
Query: 226 VLCKENPARLIKYTG-------YGNAAGMLAARGLLGCQNKGQYSSSSEESDTEE----- 273
+ + R TG Y N QY ++ + +
Sbjct: 1828 YVVERVGKR----TGWLVEIVNY-NVENQ-------------QYVAAGDLRALDTVTNVL 1869
Query: 274 -YLRVKDNINPVTGVYEPPKPDSTQEHL 300
+++++ I + + + + + HL
Sbjct: 1870 NFIKLQ-KI-DIIELQKSLSLEEVEGHL 1895
Score = 45.8 bits (108), Expect = 1e-05
Identities = 39/253 (15%), Positives = 77/253 (30%), Gaps = 90/253 (35%)
Query: 23 LKTFIEANSDSFTFPTLDRDKLDKLYSLVFNI---LCNPMYSECYIDCLSCLKLLFRDSK 79
+ I+ ++++ + +K+++ NI L NP + D
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT--------------PDKD 229
Query: 80 YLDE-LISQERFNI--LLQTARLYNT----QPTPSSLEQLGSG----------------A 116
YL IS + ++Q A T TP L G
Sbjct: 230 YLLSIPIS---CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 117 GEGES--HNADALLTIITYL----HEELASRVPSPGTTPTSSSGTVDHIL----PVLHV- 165
ES + +T++ ++ +E P+ P+ ++++ P+L +
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYE----AYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 166 -LSEAARHHKALRRLIR--NQILP-----------ARRDF--SSRPEEGDSLLSHLTRCL 209
L+ + ++ + N LP ++ S P+ L L
Sbjct: 343 NLT-----QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS----LYGL---- 389
Query: 210 SSGNTMLRDCCAD 222
N LR A
Sbjct: 390 ---NLTLRKAKAP 399
Score = 29.6 bits (66), Expect = 1.7
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 30/97 (30%)
Query: 221 ADLLFV---------LCKENPARLIKYTGYGNAAGMLAARGLLGCQNKGQYSSSSEESDT 271
AD F + NP L + G G G + + YS+ E+
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFG-----------GEKGKRIRENYSAMIFETIV 1697
Query: 272 EEYLRVK---DNINPVTG--VYEPPKPDSTQEHLRST 303
+ L+ + IN + + K L +T
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEK-----GLLSAT 1729
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 8e-06
Identities = 43/302 (14%), Positives = 78/302 (25%), Gaps = 98/302 (32%)
Query: 36 FPTLDRDKLDKLYSLVFNILCNPMYSECYIDC----------LSCLKLLFRDSKYLD-EL 84
+ ++ DKL + N+L Y + + L L++ D D +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 85 ISQERFNILLQTARLYNTQPTPSSLEQLGSGAGEGESHNADALLTIITYLHEELASRVPS 144
+ + L L QP S++ +
Sbjct: 407 VVNK-----LHKYSLVEKQPKESTI-----------------------SIP--------- 429
Query: 145 PGTTPTSSSGTVDHILPVLHVLSEAARHHKALRRLIRNQILPARRDFSSR-PEEGDS--- 200
L + L H R ++ + +P D P D
Sbjct: 430 ------------SIYLELKVKLENEYALH---RSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 201 --LLSHLTRCLSSGN-TMLRDCCADLLFVLCKENPARLIKYTGYG-NAAGMLAARGLLGC 256
+ HL T+ R D F+ K I++ NA+G + L
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK------IRHDSTAWNASGSILN--TL-- 524
Query: 257 QNKGQYSSSSEESDTEEYLRVKDNINPVTGVYEPPKPDSTQEHLRSTFETVSLTSAYSET 316
+ Y K I YE + + E + S Y++
Sbjct: 525 ------------QQLKFY---KPYICDNDPKYE--RLVNAILDFLPKIEENLICSKYTDL 567
Query: 317 VQ 318
++
Sbjct: 568 LR 569
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase,
thermophIle; HET: FMN; 1.59A {Thermus thermophilus}
SCOP: d.90.1.1
Length = 205
Score = 34.2 bits (79), Expect = 0.034
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 16/114 (14%)
Query: 79 KYLDELISQERFNILLQTARL----YNTQP-------TPSSLEQLGSGAGEGESHNADAL 127
+Y + + + +L+ A +N QP P++ L A G++H +A
Sbjct: 22 RYRKDPVPEGLLREILEAALRAPSAWNLQPWRIVVVRDPATKRALREAAF-GQAHVEEAP 80
Query: 128 LTII----TYLHEELASRVPSPGTTPTSSSGTVDHILPVLHVLSEAARHHKALR 177
+ ++ V PG I + + AR A
Sbjct: 81 VVLVLYADLEDALAHLDEVIHPGVQGERREAQKQAIQRAFAAMGQEARKAWASG 134
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket,
structural genomics protein structure initiative; HET:
MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Length = 204
Score = 31.5 bits (72), Expect = 0.23
Identities = 14/117 (11%), Positives = 33/117 (28%), Gaps = 19/117 (16%)
Query: 79 KYLDELISQERFNILLQTARL----YNTQP-------TPSSLEQLGSGAGEGESHNADAL 127
+ D+L+ + ++ A L +N+QP ++ G + A
Sbjct: 18 HFTDKLVDPKDVRTAIEIATLAPSAHNSQPWKFVVVREKNAELAK-LAYGSNFEQVSSAP 76
Query: 128 LTII-------TYLHEELASRVPSPGTTPTSSSGTVDHILPVLHVLSEAARHHKALR 177
+TI ++A + + + ++ SE
Sbjct: 77 VTIALFTDTDLAKRARKIARVGGANNFSEEQLQYFMKNLPAEFARYSEQQVSDYLAL 133
>2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE FMN; 2.11A {Streptococcus pyogenes serotype M1}
Length = 224
Score = 31.4 bits (71), Expect = 0.30
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 73 LLFRDS--KYLDELISQERFNILLQTARL----YNTQP-------TPSSLEQLGSGAGEG 119
L FR + Y +E IS E ++L A L + E++ A
Sbjct: 16 LHFRTAVRVYKEEKISDEDLALILDAAWLSPSSIGLEGWRFVVLDNKPIKEEIKPFAWGA 75
Query: 120 ESHNADALLTII 131
+ A I+
Sbjct: 76 QYQLETASHFIL 87
>3ge6_A Nitroreductase; structural GENO joint center for structural
genomics, JCSG, protein structu initiative, PSI-2,
oxidoreductase; HET: FMN; 1.85A {Exiguobacterium
sibiricum 255-15}
Length = 212
Score = 31.1 bits (71), Expect = 0.31
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 15/97 (15%)
Query: 82 DELISQERFNILLQTARL----YNTQP-------TPSSLEQLGSGAGEGESHNADALLTI 130
+ IS+E +L+ A L N QP + L A + + I
Sbjct: 26 NVKISKEEMTQILEEATLAPSSVNMQPWRFLVIDSEEGKATLAPLAKFNQVQVETSSAVI 85
Query: 131 I----TYLHEELASRVPSPGTTPTSSSGTVDHILPVL 163
++L + + D +P +
Sbjct: 86 AVFGDMKAIDQLENIYDTAVEKGLMPQEVRDRQVPAI 122
>3g14_A Nitroreductase family protein; structural genom joint center for
structural genomics, JCSG, protein structu initiative,
PSI-2, oxidoreductase; HET: MSE; 1.75A {Clostridium
novyi}
Length = 193
Score = 30.7 bits (70), Expect = 0.42
Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 15/97 (15%)
Query: 79 KYLDELISQERFNILLQTARL----YNTQP-------TPSSLEQLGSGAGEGESHNADAL 127
K+ I +++ ++ A N P + + + S ++A+
Sbjct: 16 KFEQTAIDRDKLLKIIDMAMRAPSWKNKTPYKFIVVESDKLKLDIANAIENKTSAASEAV 75
Query: 128 ----LTIITYLHEELASRVPSPGTTPTSSSGTVDHIL 160
+TI+ + E + V ++ ++HI+
Sbjct: 76 LNSPMTIVAVANPEESGDVSGKEIYLIDTAIAMEHIV 112
>3of4_A Nitroreductase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina
loihiensis}
Length = 209
Score = 30.2 bits (68), Expect = 0.66
Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 21/119 (17%)
Query: 79 KYLDELISQERFNILLQTARL----YNTQP-------TPSSLEQLGSGAGEGESHNADAL 127
+ I+ + + LL T RL Y QP EQL + + G+ AD+
Sbjct: 16 DFSGAHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNKGLREQLVNHSF-GQQKVADSS 74
Query: 128 LTIITYLHEELASRVPSP---------GTTPTSSSGTVDHILPVLHVLSEAARHHKALR 177
+I + + P T + T ++ L +S A R A+R
Sbjct: 75 ALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQAMSAATRKEWAVR 133
>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: FMN UNL; 1.70A {Porphyromonas
gingivalis W83}
Length = 198
Score = 28.8 bits (65), Expect = 1.6
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 79 KYLDELISQERFNILLQTARL----YNTQP-------TPSSLEQLGSGAGEGESHNADAL 127
K++D + +E+ +L+ R+ +N QP ++L + + A
Sbjct: 42 KFIDRPVEEEKLMAILEAGRIAPSAHNYQPWHFLVVREEEGRKRLAPCSQQPWFPGAPIY 101
Query: 128 LTIITYLHEELASRVPSP 145
+ I H+ R
Sbjct: 102 I-ITLGDHQRAWKRGAGD 118
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A
{Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A*
1v5z_A*
Length = 218
Score = 29.2 bits (65), Expect = 1.7
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 82 DELISQERFNILLQTARL----YNTQP-------TPSSLEQLGSGAGEGESHNADALLT 129
+ +SQE +LL+ RL N+QP + ++ +++ N +
Sbjct: 21 SKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSFANMHQFNQPHIKA 79
>3gbh_A NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FMN oxidoreductase,
structural genomics, JO center for structural genomics;
HET: MSE FMN PGE; 2.00A {Staphylococcus epidermidis atcc
12228}
Length = 213
Score = 28.8 bits (65), Expect = 1.7
Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 19/112 (16%)
Query: 85 ISQERFNILLQTARL----YNTQP-------TPSSLEQLGSGAGEGESHNADALLTII-- 131
I +E + ++ A N QP + E++ G + +I
Sbjct: 30 IPREEMDEIITKATKAPSSVNMQPWRIAVVQSDEMKEKVKESFGFNSRQLTTSSAMLIIF 89
Query: 132 --TYLHEELASR----VPSPGTTPTSSSGTVDHILPVLHVLSEAARHHKALR 177
+E+ V T + +D ILP LS
Sbjct: 90 GDLQNYEKAEQIYGDAVEQQLMTEDIKAQLLDWILPYYKNLSREGMKDIVNI 141
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative
nitroreductase YDFN, structural genomics, center for
structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus
subtilis}
Length = 218
Score = 28.4 bits (64), Expect = 2.8
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 16/95 (16%)
Query: 82 DELISQERFNILLQTARL----YNTQP-------TPSSLEQLGSGAGEGESHNADALLTI 130
I++E N + + L +N Q E+L A G+ + +
Sbjct: 32 GHPITKEDLNEMFELVALAPSAFNLQHTKYVTVLDQDVKEKLKQAAN-GQYKVVSSSAVL 90
Query: 131 I----TYLHEELASRVPSPGTTPTSSSGTVDHILP 161
+ +++ A + DH++
Sbjct: 91 LVLGDKQAYQQAADIYEGLKVLGILNKQEYDHMVQ 125
>1wlm_A Protein CGI-38; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Mus
musculus} SCOP: a.39.1.11
Length = 151
Score = 27.8 bits (61), Expect = 2.9
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 24/98 (24%)
Query: 215 MLRDCC-----------ADLLFVLCKENPARLIKYTGYGNAAGMLAARGLLGCQ------ 257
+ +DC D++F K AR+I Y + A LA + G
Sbjct: 45 LCKDCKVADGKAVTGTDVDIVFSKVKAKSARVINYEEFKKALEELATKRFKGKSKEEAFD 104
Query: 258 -------NKGQYSSSSEESDTEEYLRVKDNINPVTGVY 288
K + ++ T + + + TG +
Sbjct: 105 AICQLIAGKEPANIGVTKAKTGGAVDRLTDTSKYTGSH 142
>1z7h_A Tetanus toxin light chain; TENT, metalloprotease, snare,
neurotransmission, hydrolase; 2.30A {Clostridium tetani}
PDB: 1yvg_A
Length = 447
Score = 28.6 bits (63), Expect = 3.4
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 13 SGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLVFNILCNPMYSECY-IDC---- 67
+ ++ + K + + + DS ++ DK LY+ + + + I
Sbjct: 320 NIDIDSYKQIYQQKYQFDKDSNGQYIVNEDKFQILYNSIMYGFTEVELGKKFNIKTRLSY 379
Query: 68 LSCLKLLFRDSKYLDELI--SQERFNI 92
S + LD+ I E FNI
Sbjct: 380 FSMNHDPVKIPNLLDDTIYNDTEGFNI 406
>3h4o_A Nitroreductase family protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630}
PDB: 3koq_A*
Length = 191
Score = 27.6 bits (62), Expect = 3.9
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 79 KYLDELISQERFNILLQTARL----YNTQP 104
Y D + +E+ +L AR+ N QP
Sbjct: 34 NYQDRKVEKEKLEKVLDVARIAPTGGNRQP 63
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI,
protein struc initiative, midwest center for structural
genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens
str} SCOP: d.90.1.1
Length = 200
Score = 27.7 bits (62), Expect = 4.5
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 4/30 (13%)
Query: 79 KYLDELISQERFNILLQTARL----YNTQP 104
+ + +E +L A N QP
Sbjct: 25 AFDGSPMPKEHLLTILDAAHWAPSASNHQP 54
>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody
complex, toxin- system complex; 2.61A {Clostridium
botulinum} PDB: 2nz9_A 3bta_A 3v0a_A* 3v0b_A 3v0c_A
3zus_A 3zur_A
Length = 1295
Score = 28.3 bits (62), Expect = 4.6
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 12 ESGNLSNIKNALKTFIEANSDSFTFPTLDRDKLDKLYSLVFNILCNPMYSECY 64
+ +L +KN K + D+ ++D+ K DKLY ++ I + + +
Sbjct: 305 TTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFF 357
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 28.1 bits (63), Expect = 4.7
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 2/60 (3%)
Query: 169 AARHHKALRRLIRNQILPARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCAD-LLFVL 227
R I ++ R + G +L G+ + A L+ VL
Sbjct: 183 GRRARPRAEEWIE-VMIEDARAGLLKTTSGTALHEMAFHTQEDGSQLDSRMAAIELINVL 241
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 28.0 bits (62), Expect = 5.1
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 202 LSHLTRCLSSGNTMLRDCCADLLFVLCKENPARLIK 237
+ LT L S N + A +LF + ++ P K
Sbjct: 500 TAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKK 535
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent
nitroreductase-like fold, structural genomics; HET: MSE
FMN; 1.70A {Streptococcus mutans}
Length = 206
Score = 27.2 bits (61), Expect = 5.8
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 13/65 (20%)
Query: 79 KYL-DELISQERFNILLQTARL----YNTQP-------TPSSLEQLGSGAGEGESHNADA 126
++ D ++ + +L+ A N QP + E L + A A
Sbjct: 18 RFDPDAVLPNDLIKDMLEHASYAPSGNNFQPWRVVVVKNKNKQEDL-KKLAALQPQVATA 76
Query: 127 LLTII 131
+
Sbjct: 77 SAVFL 81
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 27.6 bits (62), Expect = 6.1
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 166 LSEAARHHKALRRLIR--NQILPARRDFSSRPEEGDSLLSHL 205
+ R +A L+ I+ R + +L L
Sbjct: 188 IESFRRRDEARNGLVALVADIMNGRIANPPTDKSDRDMLDVL 229
>3d19_A Conserved metalloprotein; structural genomics, unknown function,
PSI-2, protein struct initiative, nysgxrc; 2.30A
{Bacillus cereus} SCOP: a.29.13.1 a.29.13.1
Length = 283
Score = 27.2 bits (60), Expect = 6.5
Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 22/120 (18%)
Query: 76 RDSKYLDELIS-QERFNILLQTARLYNTQPTPSSLEQLGSGAGEGESHNADALLTIITY- 133
D++ ++E F + Q A Y + P +++ + + A I +
Sbjct: 41 EDTQLIEEANQFYRLFEHIEQIAHSYTNETDPEQIKRFNAEVQQ-------AATNIWGFK 93
Query: 134 ---LHEELASRVPSPGTTPTSSSGTVDHILPVLHVLSEAARHHKALRRLIRNQILPARRD 190
L L ++P P V H EA K L +L ++
Sbjct: 94 RKILGLILTCKLPGQNNFPLL----------VDHTSREADYFRKRLIQLNEGKLDALPDA 143
>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur
genomics, joint center for structural genomics, JCSG;
HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 175
Score = 26.8 bits (60), Expect = 7.0
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 79 KYLDELISQERFNILLQTARL----YNTQPT-------PSSLEQLGSGAGEGESHNADAL 127
YL++ + +E+ +++L+ + +P + L+ + + A A
Sbjct: 24 TYLNKGVEKEKIDLMLRAGMSAPSGKDVRPWEFVVVSDRAKLDSM-AAALPYAKMLTQAR 82
Query: 128 LTII 131
II
Sbjct: 83 NAII 86
>3gna_A RAG-1, V(D)J recombination-activating protein 1; DNA recombination,
DNA-binding, endonucle hydrolase; 2.40A {Mus musculus}
PDB: 3gnb_A
Length = 96
Score = 25.8 bits (56), Expect = 7.6
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 161 PVLHVLSEAARHHKALRRLIRNQILPARRDFSSRPEEGD 199
P H+LS R K R ++ Q+ ++F+ + E GD
Sbjct: 24 PRQHLLSLTRRAQKHRLRELKIQV----KEFADKEEGGD 58
>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN;
1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A*
Length = 240
Score = 26.9 bits (60), Expect = 7.8
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 12/64 (18%)
Query: 79 KYLDELISQERFNILLQTARL----YNTQPT-------PSSLEQLGSGAGEGESHNADAL 127
K+ I+ E+ ++Q Q +L AG +++ A
Sbjct: 16 KFTAVPITDEQRQTIIQAGLAASSSSMLQVVSIVRVTDSEKRNELAQFAG-NQAYVESAA 74
Query: 128 LTII 131
++
Sbjct: 75 EFLV 78
>3e39_A Putative nitroreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio
desulfuricans subsp}
Length = 178
Score = 26.8 bits (60), Expect = 7.8
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 11/64 (17%)
Query: 79 KYLDELISQERFNILLQTARL----YNTQP-------TPSSLEQLGSGAGEGESHNADAL 127
+Y DE +S E ++L+ N QP + + A
Sbjct: 20 RYTDEAVSDEAVRLILEAGIWAPSGLNNQPCRFLVIRADDPRCDILAAHTRYGHIVRGAK 79
Query: 128 LTII 131
+ I+
Sbjct: 80 VIIL 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.379
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,666,854
Number of extensions: 276859
Number of successful extensions: 577
Number of sequences better than 10.0: 1
Number of HSP's gapped: 575
Number of HSP's successfully gapped: 42
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.3 bits)