RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7112
         (319 letters)



>d1wlma1 a.39.1.11 (A:8-145) Protein cgi-38 {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 138

 Score = 27.9 bits (62), Expect = 0.94
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 11/52 (21%)

Query: 215 MLRDCC-----------ADLLFVLCKENPARLIKYTGYGNAAGMLAARGLLG 255
           + +DC             D++F   K   AR+I Y  +  A   LA +   G
Sbjct: 38  LCKDCKVADGKAVTGTDVDIVFSKVKAKSARVINYEEFKKALEELATKRFKG 89


>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 959

 Score = 26.8 bits (58), Expect = 4.7
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 8/58 (13%)

Query: 178 RLIRNQILP-----ARRDFSSRPEEGDSLLSHLTRCLSSGNTMLRDCCADLLFVLCKE 230
             ++ QI       A  DF   P+   +LLS L   LS+ + +       +   + K 
Sbjct: 99  NNLQVQIGEAISSIADSDF---PDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKR 153


>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 529

 Score = 26.4 bits (56), Expect = 5.7
 Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 26/129 (20%)

Query: 125 DALLTIITYLHEELASRVPSPGTTPTSSSG-----TVDHILPVLHVLS------EAARHH 173
             L+ ++   H++   R    GT      G      V+     LH+L+         R  
Sbjct: 400 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 459

Query: 174 KALRRLI----------RNQILPARRDFSSRPEEGDSL-----LSHLTRCLSSGNTMLRD 218
             +   +          +        + +   E  +++      + LT  L S N  +  
Sbjct: 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 519

Query: 219 CCADLLFVL 227
             A +LF +
Sbjct: 520 YAAAVLFRM 528


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,109,054
Number of extensions: 50761
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 5
Length of query: 319
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,240,546
Effective search space: 290287764
Effective search space used: 290287764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)