BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7113
         (84 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex
          Length = 1253

 Score =  141 bits (356), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 66/78 (84%), Positives = 72/78 (92%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKE SMMEYVLY LDLYNDSAHYALT F KQFLYDE+EAEVNLCFDQ
Sbjct: 642 MSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQ 701

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKL++QIFA+YK +A 
Sbjct: 702 FVYKLADQIFAYYKVMAG 719


>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
          3,5- Dinitrocatechol
          Length = 216

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 7  LTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQ 44
          + +H+L+  EP   + VL  +D Y +   +A+ V  K+
Sbjct: 11 ILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKK 48


>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
          With Bound Sam And Dnc
          Length = 214

 Score = 26.6 bits (57), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 7  LTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQ 44
          + +H+L+  EP   + VL  +D Y +   +A+ V  K+
Sbjct: 8  ILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKK 45


>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
          Methyltransferase Bound With S-Adenosylmethionine And
          Inhibitor Dinitrocatechol
          Length = 214

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 7  LTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQ 44
          + +H+L+  EP   + VL  +D Y +   +A+ V  K+
Sbjct: 8  ILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKK 45


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.137    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,289,077
Number of Sequences: 62578
Number of extensions: 71497
Number of successful extensions: 178
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 4
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)