Query psy7113
Match_columns 84
No_of_seqs 52 out of 54
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 18:29:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05994 FragX_IP: Cytoplasmic 100.0 3.5E-45 7.7E-50 311.5 6.6 82 1-82 251-333 (820)
2 KOG3534|consensus 100.0 1.5E-44 3.2E-49 310.3 8.5 82 1-82 637-718 (1253)
3 PLN03099 PIR Protein PIR; Prov 100.0 1.8E-43 4E-48 309.6 9.1 82 1-82 600-681 (1232)
4 PF08146 BP28CT: BP28CT (NUC21 85.6 0.71 1.5E-05 32.6 2.3 25 47-71 34-58 (153)
5 PF10862 FcoT: FcoT-like thioe 76.9 2.1 4.4E-05 31.8 2.2 14 52-65 54-67 (157)
6 COG4030 Uncharacterized protei 66.8 2.1 4.5E-05 34.6 0.3 39 4-54 10-50 (315)
7 PF09385 HisK_N: Histidine kin 61.2 7.9 0.00017 27.9 2.4 14 51-64 113-126 (133)
8 TIGR01337 apcB allophycocyanin 43.2 42 0.00091 24.4 3.8 37 32-68 124-165 (167)
9 PF08350 DUF1724: Domain of un 39.6 15 0.00033 22.7 0.9 26 53-78 37-62 (64)
10 PF00502 Phycobilisome: Phycob 39.3 86 0.0019 22.0 4.8 39 28-66 116-157 (157)
11 smart00265 BH4 BH4 Bcl-2 homol 34.8 34 0.00074 18.6 1.7 14 55-68 7-20 (27)
12 CHL00089 apcF allophycocyanin 34.5 75 0.0016 23.3 4.0 37 32-68 125-167 (169)
13 KOG1531|consensus 29.7 94 0.002 25.4 4.1 32 46-79 223-254 (304)
14 KOG0769|consensus 29.5 1.5E+02 0.0032 24.3 5.2 66 10-78 6-92 (308)
15 PF03112 DUF244: Uncharacteriz 28.3 70 0.0015 23.9 2.9 28 45-73 106-133 (158)
16 PLN00218 predicted protein; Pr 28.2 72 0.0016 23.2 2.9 19 47-65 37-55 (151)
17 PF02137 A_deamin: Adenosine-d 22.5 1.2E+02 0.0027 23.4 3.5 21 34-55 27-47 (343)
18 PF06603 UpxZ: UpxZ family of 22.0 78 0.0017 22.3 2.1 13 50-62 49-61 (106)
19 KOG1852|consensus 21.2 75 0.0016 24.6 2.0 17 41-57 172-188 (223)
No 1
>PF05994 FragX_IP: Cytoplasmic Fragile-X interacting family; InterPro: IPR008081 Cytoplasmic fragile X mental retardation protein (FMRP) interacting protein belongs to a highly conserved but, as yet, functionally uncharacterised family. Absence of FMRP is responsible for pathologic manifestations in Fragile X Syndrome, the most frequent cause of inherited mental retardation []. FMRP is an RNA-binding protein that may have a role in local protein translation at neuronal dendrites and in dendritic spine maturation []. CYFIP1 and CYFIP2, which share a high level of sequence identity, have recently been identified as cytoplasmic FMRP interacting proteins []. CYFIP2 interacts with FMRP-related proteins FXR1P/2P, while CYFIP1 interacts exclusively with FMRP. The FMRP-CYFIP interaction involves the domain of FMRP that also mediates homo- and heteromerisation, suggesting competition between the various interaction partners. CYFIP1 also interacts with the small GTPase Rac1 implicated in development and maintenance of neuronal structures. CYFIP1/2 are both present in synaptosomal extracts []. PIR121 (121F-specific p53 inducible RNA) is another functionally uncharacterised member of this family. The PIR121 gene maps to human chromosome 5q34, a region frequently translocated in acute myeloid leukaemia but not known to be amplified or deleted in solid tumours. Interaction between PIR121 and FMRP has been demonstrated, and hence PIR121 has also been termed CYFIP2 (Cytoplasmic FMRP Interacting Protein 2) [, ]. Shyc (Selective HYbridizing Clone) is a cytoplasmic protein of unknown function, expressed in the developing and embryonic nervous system. The protein has also been designated CYFIP1 due to the high sequence identity (98.7%) to its human orthologue. The CYFIP orthologues in Caenorhabditis elegans and Drosophila melanogaster (Fruit fly) share about 51% and 67% sequence identity with the human proteins, respectively []. The high level of conservation manifest throughout the entire CYFIP sequence between various orthologues suggests a number of functionally/structurally important domains. ; PDB: 3P8C_A.
Probab=100.00 E-value=3.5e-45 Score=311.52 Aligned_cols=82 Identities=73% Similarity=1.300 Sum_probs=78.0
Q ss_pred CCcchHHHHHhhccCC-CchhhhhhhhhhccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7113 1 MSMPWILTDHILKTKE-PSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAAR 79 (84)
Q Consensus 1 ~SLPwILtdhiL~~~~-~~l~e~ilypLdlYnDaA~~AL~~lk~q~LydEIeAEvnLCfDq~v~klsd~if~~yK~~A~s 79 (84)
||||||||||||++++ |+|+|+||||||||||||++||++|||||||||||||||||||||||||||+||+|||++|||
T Consensus 251 ~SLPwILtdhiL~s~~~~~l~E~ilyPLdlYNDAA~~AL~~lk~q~LyDEIEAEv~lcfdqlv~~lsd~if~~yK~~Aa~ 330 (820)
T PF05994_consen 251 MSLPWILTDHILESKDKPSLMEYILYPLDLYNDAAHYALKKLKSQFLYDEIEAEVNLCFDQLVFKLSDQIFTHYKSLAAS 330 (820)
T ss_dssp G-HHHHHHHHHHHHT--GGGTTTHHHHHTHHHHHHHHHHHTS-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHhcCCcchhHHHHhhhHHHhhHHHHHHHHHHHHhhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy7113 80 FTF 82 (84)
Q Consensus 80 ~~~ 82 (84)
+++
T Consensus 331 ~~l 333 (820)
T PF05994_consen 331 MLL 333 (820)
T ss_dssp HTS
T ss_pred Hhc
Confidence 986
No 2
>KOG3534|consensus
Probab=100.00 E-value=1.5e-44 Score=310.32 Aligned_cols=82 Identities=89% Similarity=1.369 Sum_probs=81.2
Q ss_pred CCcchHHHHHhhccCCCchhhhhhhhhhccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7113 1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARF 80 (84)
Q Consensus 1 ~SLPwILtdhiL~~~~~~l~e~ilypLdlYnDaA~~AL~~lk~q~LydEIeAEvnLCfDq~v~klsd~if~~yK~~A~s~ 80 (84)
||||||||||||++++|||||+++||||+|||+|++||++|+||||||||||||||||||||||||||||+|||++|+||
T Consensus 637 MSMPWILTDhIL~tkEpSmmE~vLY~LDLYNDsA~YaLt~F~KQFLYDEvEAEVNLCFDQFVYKLseqiFa~YK~lAgs~ 716 (1253)
T KOG3534|consen 637 MSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTNFNKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAGSM 716 (1253)
T ss_pred ccCchhhhhhHHhcCChhHHHHhhcchhcccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q psy7113 81 TF 82 (84)
Q Consensus 81 ~~ 82 (84)
++
T Consensus 717 lL 718 (1253)
T KOG3534|consen 717 LL 718 (1253)
T ss_pred hh
Confidence 86
No 3
>PLN03099 PIR Protein PIR; Provisional
Probab=100.00 E-value=1.8e-43 Score=309.57 Aligned_cols=82 Identities=55% Similarity=0.942 Sum_probs=80.9
Q ss_pred CCcchHHHHHhhccCCCchhhhhhhhhhccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7113 1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARF 80 (84)
Q Consensus 1 ~SLPwILtdhiL~~~~~~l~e~ilypLdlYnDaA~~AL~~lk~q~LydEIeAEvnLCfDq~v~klsd~if~~yK~~A~s~ 80 (84)
||||||||||||++++|+|+|+||||||||||||++||++|||||||||||||||||||||||||||+||+|||++|+|+
T Consensus 600 ~SLPwIL~dhiL~~~~~~L~E~IfyPLdiYNDAA~~AL~~lk~qfLYDEIEAEv~LCfDqlv~klsd~iF~~yK~~A~s~ 679 (1232)
T PLN03099 600 CSLPWMLVDYILESQDAGLLESVLLPFDIYNDSAQHALRVLKQRFLYDEIEAEVDLCFDQLVSKLSESIFTYYKSRAASK 679 (1232)
T ss_pred cCccHHHHHHHHcCCChhhhhhhhcchhhhhhHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q psy7113 81 TF 82 (84)
Q Consensus 81 ~~ 82 (84)
++
T Consensus 680 ~L 681 (1232)
T PLN03099 680 LL 681 (1232)
T ss_pred hh
Confidence 75
No 4
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=85.63 E-value=0.71 Score=32.63 Aligned_cols=25 Identities=44% Similarity=0.554 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7113 47 YDEVEAEVNLCFDQFVYKLSEQIFA 71 (84)
Q Consensus 47 ydEIeAEvnLCfDq~v~klsd~if~ 71 (84)
-++||..|+=||=++|+||+|..|.
T Consensus 34 v~~vE~~v~~~~~~lV~KLnE~~FR 58 (153)
T PF08146_consen 34 VDEVESSVISAFVSLVLKLNEATFR 58 (153)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhH
Confidence 4689999999999999999999875
No 5
>PF10862 FcoT: FcoT-like thioesterase domain; InterPro: IPR022598 Proteins in this family have a HotDog fold. This family was formerly known as DUF2662. The structure of Rv0098 from M. tuberculosis [] suggested a thioesterase function. Assays showed that this protein was a thioesterase with a preference for long chain fatty acyl groups []. The maximal Kcat was observed for palmitoyl-CoA, although longer and shorter molecules were also cleaved. In solution this protein forms a homo-hexameric complex.; PDB: 2PFC_A 3B18_A.
Probab=76.92 E-value=2.1 Score=31.82 Aligned_cols=14 Identities=43% Similarity=1.039 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q psy7113 52 AEVNLCFDQFVYKL 65 (84)
Q Consensus 52 AEvnLCfDq~v~kl 65 (84)
-|.||||.|+.|-+
T Consensus 54 VEfniCyNQl~Y~~ 67 (157)
T PF10862_consen 54 VEFNICYNQLAYYL 67 (157)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehhhHHHHHHHH
Confidence 48999999998864
No 6
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.76 E-value=2.1 Score=34.60 Aligned_cols=39 Identities=33% Similarity=0.445 Sum_probs=25.7
Q ss_pred chHHHHHhhccCCC--chhhhhhhhhhccchhHHHHHHHHHhhhhHHHHHHHH
Q psy7113 4 PWILTDHILKTKEP--SMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEV 54 (84)
Q Consensus 4 PwILtdhiL~~~~~--~l~e~ilypLdlYnDaA~~AL~~lk~q~LydEIeAEv 54 (84)
||+|+||+++--.. ---.-+|--++-|+| +||+|+..|.
T Consensus 10 P~sl~D~A~E~~a~~~pngrrfF~~~SeyDD------------~la~E~rReG 50 (315)
T COG4030 10 PWSLTDFALELCAAVFPNGRRFFSNLSEYDD------------YLAYEVRREG 50 (315)
T ss_pred CCccchhHHHHHHHHcCCHHHHHHhhhhhhh------------HHHHHHhccC
Confidence 99999999983210 001225566777777 7888887663
No 7
>PF09385 HisK_N: Histidine kinase N terminal; InterPro: IPR018984 This domain is found at the N-terminal of sensor histidine kinase proteins. ; PDB: 3PMC_B 3PMD_A.
Probab=61.18 E-value=7.9 Score=27.91 Aligned_cols=14 Identities=36% Similarity=0.800 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q psy7113 51 EAEVNLCFDQFVYK 64 (84)
Q Consensus 51 eAEvnLCfDq~v~k 64 (84)
-.++|.|||+|.|-
T Consensus 113 i~~IN~~FDkfiy~ 126 (133)
T PF09385_consen 113 IEKINYFFDKFIYY 126 (133)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36789999999874
No 8
>TIGR01337 apcB allophycocyanin, beta subunit. The alpha and beta subunits of allophycocyanin form heterodimers, six of which associate into larger aggregates as part of the phycobilisome, a light-harvesting complex of phycobiliproteins and linker proteins. This model describes allophycocyanin beta subunit. Other, homologous phyobiliproteins include allophycocyanin alpha chain and the phycocyanin and phycoerythrin alpha and beta chains.
Probab=43.21 E-value=42 Score=24.41 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHh---hhhHHH--HHHHHHHHHHHHHHHHHHH
Q psy7113 32 DSAHYALTVFRK---QFLYDE--VEAEVNLCFDQFVYKLSEQ 68 (84)
Q Consensus 32 DaA~~AL~~lk~---q~LydE--IeAEvnLCfDq~v~klsd~ 68 (84)
++...||..+|. +.+=++ -.+|++-|||.+.-.||++
T Consensus 124 ~~~v~al~~mk~~~~~~~~~~~~~~~e~~~yFd~li~~ls~~ 165 (167)
T TIGR01337 124 GPTVRAIQIMKEVIISLVGPDNDAGKEIGEPFDYMCSGLSEN 165 (167)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHhHHHHHHHHHHHHHHHHhhc
Confidence 345557777776 455556 7789999999999998874
No 9
>PF08350 DUF1724: Domain of unknown function (DUF1724); InterPro: IPR013561 This domain of unknown function has so far only been found at the C terminus of archaean proteins, including several transcriptional regulators of the ArsR family (see IPR001845 from INTERPRO).
Probab=39.57 E-value=15 Score=22.72 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7113 53 EVNLCFDQFVYKLSEQIFAHYKQLAA 78 (84)
Q Consensus 53 EvnLCfDq~v~klsd~if~~yK~~A~ 78 (84)
+.-+|||.=.-+-++..|.|||..|-
T Consensus 37 ~~lis~~~~Al~WG~eLF~yY~~~s~ 62 (64)
T PF08350_consen 37 QDLISFDPSALKWGEELFEYYKKRSE 62 (64)
T ss_pred eeEEECCHHHHHHHHHHHHHHHHhCc
Confidence 33567888888999999999999874
No 10
>PF00502 Phycobilisome: Phycobilisome protein; InterPro: IPR012128 Cyanobacteria and red algae harvest light through water-soluble complexes, called phycobilisomes, which are attached to the outer face of the thylakoid membrane []. These complexes are capable of transferring the absorbed energy to the photosynthetic reaction centre with greater than 95% efficiency. Phycobilisomes contain various photosynthetic light harvesting proteins known as biliproteins, and linker proteins which help assemble the structure. The two main structural elements of the complex are a core located near the photosynthetic reaction centre, and rods attached to this core. Allophycocyanin is the major component of the core, while the rods contain phycocyanins, phycoerythrins and linker proteins. The rod biliproteins harvest photons, with the excitation energy being passed through the rods into the allophycocyanin in the core. Other core biliproteins subsequently pass this energy to chlorophyll within the thylakoid membrane. This entry represents the alpha and beta subunits found in biliproteins from cyanobacteria and red algae. Structural studies indicate that the basic structural unit of most biliproteins is a heterodimer composed of these alpha and beta subunits [, , , ]. The full protein is a ring-like trimer assembly of these heterodimers. Each subunit of the heterodimer has eight helices and binds chromophores through thioester bonds formed at particular cysteine residues. These chromophores, also known as bilins, are open-chain tetrapyrroles whose number and type vary with the particular biliprotein eg R-phyocerythrin binds five phycoerythrobilins per heterodimer, while allophycocyanin binds two phycocyanobilins per heterodimer.; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2VML_I 2VJR_A 1KTP_B 3L0F_B 1JBO_B 3KVS_B 1PHN_B 3BRP_B 2C7K_B 2C7L_B ....
Probab=39.33 E-value=86 Score=22.02 Aligned_cols=39 Identities=31% Similarity=0.364 Sum_probs=25.0
Q ss_pred hccchhHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHH
Q psy7113 28 DLYNDSAHYALTVFRK---QFLYDEVEAEVNLCFDQFVYKLS 66 (84)
Q Consensus 28 dlYnDaA~~AL~~lk~---q~LydEIeAEvnLCfDq~v~kls 66 (84)
.+=.++...|++.+|. +.|=.|-.+|++-|||.++--||
T Consensus 116 ~vp~~~~v~al~~lk~~~~~~l~~e~~~~~~~yfD~~i~~ls 157 (157)
T PF00502_consen 116 GVPIDAYVEALQCLKEAALQLLSPEAAAEIAPYFDYLINALS 157 (157)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-
T ss_pred cCCchHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHCc
Confidence 3333444555555554 35557889999999999876654
No 11
>smart00265 BH4 BH4 Bcl-2 homology region 4.
Probab=34.83 E-value=34 Score=18.63 Aligned_cols=14 Identities=43% Similarity=0.660 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q psy7113 55 NLCFDQFVYKLSEQ 68 (84)
Q Consensus 55 nLCfDq~v~klsd~ 68 (84)
+|++|-+.||||+.
T Consensus 7 elV~~yv~yKLsQr 20 (27)
T smart00265 7 ELVVDYVTYKLSQN 20 (27)
T ss_pred HHHHHHHHHHHhhc
Confidence 58899999999975
No 12
>CHL00089 apcF allophycocyanin beta 18 subunit
Probab=34.53 E-value=75 Score=23.33 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHh---hhhHH---HHHHHHHHHHHHHHHHHHHH
Q psy7113 32 DSAHYALTVFRK---QFLYD---EVEAEVNLCFDQFVYKLSEQ 68 (84)
Q Consensus 32 DaA~~AL~~lk~---q~Lyd---EIeAEvnLCfDq~v~klsd~ 68 (84)
++...||..+|. +.+=+ |..+|++-|||.+.-.|+++
T Consensus 125 ~~~i~al~~mk~~~~~~~~~~~~~~~~~~~~yFd~l~~~l~~~ 167 (169)
T CHL00089 125 APTVRSIELLKEIIKEEIKSQNIDAHDYIDEPFQYMIKNLSEQ 167 (169)
T ss_pred HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhhc
Confidence 344556666654 33333 67799999999999999875
No 13
>KOG1531|consensus
Probab=29.72 E-value=94 Score=25.41 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7113 46 LYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAAR 79 (84)
Q Consensus 46 LydEIeAEvnLCfDq~v~klsd~if~~yK~~A~s 79 (84)
.||+|+.||.-- .+=|-|+.+||..-|+-++|
T Consensus 223 ~~d~iddev~q~--~~e~~la~~I~~am~Es~~S 254 (304)
T KOG1531|consen 223 CYDSIDDEVLQS--LMEYSLANQIYYAMKESATS 254 (304)
T ss_pred chhhhhHHHHhh--HHHHHHHHHHHHHHHHHHHH
Confidence 599999998654 56789999999998887665
No 14
>KOG0769|consensus
Probab=29.52 E-value=1.5e+02 Score=24.31 Aligned_cols=66 Identities=26% Similarity=0.446 Sum_probs=37.2
Q ss_pred HhhccCCCc-hhhhhhhhhhccchhHHHHHHH---HHhhhhHH---H-HHHH-------------HHHHHHHHHHHHHHH
Q psy7113 10 HILKTKEPS-MMEYVLYPLDLYNDSAHYALTV---FRKQFLYD---E-VEAE-------------VNLCFDQFVYKLSEQ 68 (84)
Q Consensus 10 hiL~~~~~~-l~e~ilypLdlYnDaA~~AL~~---lk~q~Lyd---E-IeAE-------------vnLCfDq~v~klsd~ 68 (84)
|++..--.| +--.++||||.-+---|.=... =|.|+.-| | |..| +..|..+|||-.
T Consensus 6 ~A~sGAvGs~iA~t~~YPLDT~ksr~Q~e~~~~~~~k~r~t~dvm~eiik~eg~lsLYqGl~p~~~~t~iSnFVYFY--- 82 (308)
T KOG0769|consen 6 HALSGAVGSLIAMTIFYPLDTVKSRLQAEVRVRGQRKYRYTSDVMWEIIKEEGVLSLYQGLGPVLVSTFISNFVYFY--- 82 (308)
T ss_pred HHhhhhHHHHHHHHhhcchHHHHHHHHHHHHhhhccchhHHHHHHHHHHhccchHHHhccccHHHHHHHHhhhHhhh---
Confidence 444433333 3457899999887544433321 22222222 2 2222 467999999976
Q ss_pred HHHHHHHHhh
Q psy7113 69 IFAHYKQLAA 78 (84)
Q Consensus 69 if~~yK~~A~ 78 (84)
.|+++|..+.
T Consensus 83 ~y~~~k~~~~ 92 (308)
T KOG0769|consen 83 TYSYFKAVAS 92 (308)
T ss_pred hHHHHHHHHh
Confidence 4777777664
No 15
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=28.28 E-value=70 Score=23.94 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7113 45 FLYDEVEAEVNLCFDQFVYKLSEQIFAHY 73 (84)
Q Consensus 45 ~LydEIeAEvnLCfDq~v~klsd~if~~y 73 (84)
..+|||..+-.| .+|..|++.+.+|++-
T Consensus 106 ~ki~~I~~~~~L-i~~vnYrf~~fvF~~d 133 (158)
T PF03112_consen 106 IKIDEIMNKYPL-INHVNYRFKEFVFNYD 133 (158)
T ss_pred HHHHHHHhhccH-HHHHHHHHHHHHHhcC
Confidence 567999998776 5788899999998874
No 16
>PLN00218 predicted protein; Provisional
Probab=28.20 E-value=72 Score=23.23 Aligned_cols=19 Identities=37% Similarity=0.877 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7113 47 YDEVEAEVNLCFDQFVYKL 65 (84)
Q Consensus 47 ydEIeAEvnLCfDq~v~kl 65 (84)
+--...||-+|||-|+.++
T Consensus 37 flafheevlvcfdvfiwrl 55 (151)
T PLN00218 37 FLAFHEEVLVCFDVFIWRL 55 (151)
T ss_pred HHHHhHHHHHHHHHHHHHh
Confidence 3345679999999998875
No 17
>PF02137 A_deamin: Adenosine-deaminase (editase) domain; InterPro: IPR002466 Editase (3.5 from EC) are enzymes that alter mRNA by catalyzing the site-selective deamination of adenosine residue into inosine residue. The editase domain contains the active site and binds three Zn atoms []. Several editases share a common global arrangement of domains, from N to C terminus: two 'double-stranded RNA-specific adenosine deaminase' (DRADA) repeat domains (IPR000607 from INTERPRO), followed by three 'double-stranded RNA binding' (DsRBD) domains (IPR001159 from INTERPRO), followed by the editase domain. Other editases have a simplified domains structure with no DRADA_REP and possibly fewer DSRBD domains. Editase that deaminate cytidine are not detected by this signature.; GO: 0003723 RNA binding, 0004000 adenosine deaminase activity, 0006396 RNA processing; PDB: 1ZY7_B.
Probab=22.51 E-value=1.2e+02 Score=23.42 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHH
Q psy7113 34 AHYALTVFRKQFLYDEVEAEVN 55 (84)
Q Consensus 34 A~~AL~~lk~q~LydEIeAEvn 55 (84)
.--|++-|+ ||||+||+...+
T Consensus 27 EVLARR~f~-r~L~~el~~~~~ 47 (343)
T PF02137_consen 27 EVLARRAFL-RFLYEELELLLS 47 (343)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHhc
Confidence 344555555 699999987654
No 18
>PF06603 UpxZ: UpxZ family of transcription anti-terminator antagonists; InterPro: IPR010570 This family consists of several hypothetical proteins of unknown function and seems to be specific to Bacteroides species.
Probab=21.96 E-value=78 Score=22.25 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q psy7113 50 VEAEVNLCFDQFV 62 (84)
Q Consensus 50 IeAEvnLCfDq~v 62 (84)
+|.|+|||.--++
T Consensus 49 ~EeeA~lCLaLLm 61 (106)
T PF06603_consen 49 PEEEANLCLALLM 61 (106)
T ss_pred HHHHHHHHHHHHH
Confidence 7999999987653
No 19
>KOG1852|consensus
Probab=21.19 E-value=75 Score=24.57 Aligned_cols=17 Identities=41% Similarity=0.856 Sum_probs=15.1
Q ss_pred HHhhhhHHHHHHHHHHH
Q psy7113 41 FRKQFLYDEVEAEVNLC 57 (84)
Q Consensus 41 lk~q~LydEIeAEvnLC 57 (84)
|+-|-+|||-|+|.-||
T Consensus 172 fhhr~ifdefe~etylc 188 (223)
T KOG1852|consen 172 FHHRKIFDEFENETYLC 188 (223)
T ss_pred HHHHHHHHHhhhhhHHH
Confidence 46778999999999999
Done!