Query psy7113
Match_columns 84
No_of_seqs 52 out of 54
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 18:29:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_A Cytoplasmic FMR1-intera 100.0 1E-44 3.4E-49 317.4 6.6 82 1-82 642-723 (1253)
2 1yku_A Hypothetical protein PX 73.2 2 6.9E-05 30.2 2.4 21 51-74 113-133 (136)
3 2pfc_A Hypothetical protein RV 69.1 2.5 8.7E-05 31.0 2.2 15 52-66 76-90 (183)
4 3pmd_A Conserved domain protei 68.7 2.9 9.9E-05 29.9 2.4 15 50-64 115-129 (153)
5 3uv1_A DER F 7 allergen; super 49.0 8 0.00027 26.5 1.8 19 47-65 5-23 (196)
6 3d3l_A Arachidonate 12-lipoxyg 31.5 24 0.00081 29.0 2.2 48 1-55 437-485 (541)
7 1lox_A 15-lipoxygenase, 15LOX; 29.0 28 0.00097 29.0 2.3 48 1-55 590-638 (662)
8 3vf1_A 11R-lipoxygenase; LOX, 28.9 28 0.00095 29.3 2.2 48 1-55 626-674 (698)
9 3rde_A Arachidonate 12-lipoxyg 28.3 30 0.001 28.6 2.3 48 1-55 501-549 (573)
10 3v98_A Arachidonate 5-lipoxyge 24.4 34 0.0012 28.8 2.0 48 1-55 619-667 (691)
11 3fg1_A Allene oxide synthase-l 23.4 40 0.0014 28.4 2.2 48 1-55 624-672 (696)
12 3dy5_A Allene oxide synthase-l 20.9 47 0.0016 29.3 2.2 48 1-55 994-1042(1066)
No 1
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=100.00 E-value=1e-44 Score=317.40 Aligned_cols=82 Identities=80% Similarity=1.281 Sum_probs=81.0
Q ss_pred CCcchHHHHHhhccCCCchhhhhhhhhhccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7113 1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARF 80 (84)
Q Consensus 1 ~SLPwILtdhiL~~~~~~l~e~ilypLdlYnDaA~~AL~~lk~q~LydEIeAEvnLCfDq~v~klsd~if~~yK~~A~s~ 80 (84)
||||||||||||++++|+|+|+||||||||||||++||++|||||||||||||||||||||||||||+||+|||++|+||
T Consensus 642 ~SLPWILtdhiL~s~~~~l~E~ilyPLdlYNDAA~~AL~~lk~qfLYDEIEAEvnLCfDqlv~kLSd~iF~~yK~~Aas~ 721 (1253)
T 3p8c_A 642 MSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKVMAGSL 721 (1253)
T ss_dssp GCHHHHHHHHHHHHTCGGGTTTHHHHHTHHHHHHHHHHHTSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHccCCchhHHHHhcchhHHhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q psy7113 81 TF 82 (84)
Q Consensus 81 ~~ 82 (84)
++
T Consensus 722 lL 723 (1253)
T 3p8c_A 722 LL 723 (1253)
T ss_dssp TS
T ss_pred hc
Confidence 85
No 2
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis} PDB: 3pmc_A
Probab=73.23 E-value=2 Score=30.16 Aligned_cols=21 Identities=24% Similarity=0.603 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7113 51 EAEVNLCFDQFVYKLSEQIFAHYK 74 (84)
Q Consensus 51 eAEvnLCfDq~v~klsd~if~~yK 74 (84)
-.++|.|||+|.|. .|+.|+.
T Consensus 113 i~kIN~~FD~fly~---aV~~Yte 133 (136)
T 1yku_A 113 VKKINQFFDHLIYY---TVHSYYE 133 (136)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHh
Confidence 45789999999885 3444443
No 3
>2pfc_A Hypothetical protein RV0098/MT0107; thioesterase, virulence, unknown function; HET: PLM; 2.30A {Mycobacterium tuberculosis}
Probab=69.10 E-value=2.5 Score=31.02 Aligned_cols=15 Identities=40% Similarity=0.802 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy7113 52 AEVNLCFDQFVYKLS 66 (84)
Q Consensus 52 AEvnLCfDq~v~kls 66 (84)
-|.|+||.|+.|-+-
T Consensus 76 VEfniCfNQlaY~l~ 90 (183)
T 2pfc_A 76 VELILCFNQLAYSAF 90 (183)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeeehhHHHHHHHHH
Confidence 489999999988653
No 4
>3pmd_A Conserved domain protein; globin fold, non-heme globin, sporulation, bacillus anthraci sensor domain, chloride coordination; HET: 11A; 1.76A {Bacillus anthracis}
Probab=68.68 E-value=2.9 Score=29.91 Aligned_cols=15 Identities=40% Similarity=0.853 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy7113 50 VEAEVNLCFDQFVYK 64 (84)
Q Consensus 50 IeAEvnLCfDq~v~k 64 (84)
|-.++|.|||+|.|.
T Consensus 115 iI~kIN~~FD~f~y~ 129 (153)
T 3pmd_A 115 VIEQINLFFDHLIYS 129 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346789999999885
No 5
>3uv1_A DER F 7 allergen; super-roll; 2.00A {Dermatophagoides farinae}
Probab=49.04 E-value=8 Score=26.47 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7113 47 YDEVEAEVNLCFDQFVYKL 65 (84)
Q Consensus 47 ydEIeAEvnLCfDq~v~kl 65 (84)
||.+.+++|-++||++=.+
T Consensus 5 ~d~~~~~~N~~vD~~l~~~ 23 (196)
T 3uv1_A 5 YDKITEEINKAIDDAIAAI 23 (196)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 7899999999999987554
No 6
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens}
Probab=31.46 E-value=24 Score=28.98 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=26.6
Q ss_pred CCcchHHHHHhhccCCCchhhhhhhhhhc-cchhHHHHHHHHHhhhhHHHHHHHHH
Q psy7113 1 MSMPWILTDHILKTKEPSMMEYVLYPLDL-YNDSAHYALTVFRKQFLYDEVEAEVN 55 (84)
Q Consensus 1 ~SLPwILtdhiL~~~~~~l~e~ilypLdl-YnDaA~~AL~~lk~q~LydEIeAEvn 55 (84)
|+++|+|+.|--+ +..|-+ ||=+- -+..+..|+.+|+++. +|||.++.
T Consensus 437 ~~~~~~LS~~~~d--e~~LG~---y~~~~f~d~~~~~a~~~F~~~L--~~ie~~I~ 485 (541)
T 3d3l_A 437 MAISWHLSRRQPD--MVPLGH---HKEKYFSGPKPKAVLNQFRTDL--EKLEKEIT 485 (541)
T ss_dssp HHHHHHHC----C--CCBTTC---CCCCSCCSHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHhccCCCC--Cccccc---CCcccccChHHHHHHHHHHHHH--HHHHHHHH
Confidence 4677888887422 222211 11111 2567888999999887 58887754
No 7
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A*
Probab=28.97 E-value=28 Score=29.00 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=27.8
Q ss_pred CCcchHHHHHhhccCCCchhhhhhhhhhc-cchhHHHHHHHHHhhhhHHHHHHHHH
Q psy7113 1 MSMPWILTDHILKTKEPSMMEYVLYPLDL-YNDSAHYALTVFRKQFLYDEVEAEVN 55 (84)
Q Consensus 1 ~SLPwILtdhiL~~~~~~l~e~ilypLdl-YnDaA~~AL~~lk~q~LydEIeAEvn 55 (84)
|+++|+|+.|-- .+..|-+ ||=.- -+..+..|+.+|+++. +|||.++.
T Consensus 590 ~~~~~~LS~~~~--de~~LG~---~~~~~~~d~~~~~a~~~F~~~L--~~ie~~I~ 638 (662)
T 1lox_A 590 MSIVWQLGRDQP--IMVPLGQ---HQEEYFSGPEPRAVLEKFREEL--AIMDKEIE 638 (662)
T ss_dssp HHHHHHTT--CC--CCCBTTC---CCCCCCCSHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHhccCCC--Ccccccc---CCcccccCHHHHHHHHHHHHHH--HHHHHHHH
Confidence 467788888742 2222211 11111 2667888999999987 58888754
No 8
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa}
Probab=28.87 E-value=28 Score=29.34 Aligned_cols=48 Identities=21% Similarity=0.303 Sum_probs=29.2
Q ss_pred CCcchHHHHHhhccCCCchhhhhhhhhhc-cchhHHHHHHHHHhhhhHHHHHHHHH
Q psy7113 1 MSMPWILTDHILKTKEPSMMEYVLYPLDL-YNDSAHYALTVFRKQFLYDEVEAEVN 55 (84)
Q Consensus 1 ~SLPwILtdhiL~~~~~~l~e~ilypLdl-YnDaA~~AL~~lk~q~LydEIeAEvn 55 (84)
|+++|+|..|--+ +..|-+ ||-+- -++.+..|+.+|+++. .|||.++.
T Consensus 626 ~~~~~~LS~~~~d--e~~LG~---y~~~~~~~~~~~~a~~~F~~~L--~~ie~~I~ 674 (698)
T 3vf1_A 626 VSVVNALTTIYPT--EKFLGD---YADNLFGDAAAHAAMAKFKSNL--ANITKQIT 674 (698)
T ss_dssp HHHHHHHTCCCTT--CCBTTC---CTTCCCCCHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHhcCCCCC--Cccccc---CCccccCCHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3567777776321 111211 23211 3678999999999987 58888754
No 9
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa}
Probab=28.29 E-value=30 Score=28.60 Aligned_cols=48 Identities=17% Similarity=0.314 Sum_probs=29.5
Q ss_pred CCcchHHHHHhhccCCCchhhhhhhhhh-ccchhHHHHHHHHHhhhhHHHHHHHHH
Q psy7113 1 MSMPWILTDHILKTKEPSMMEYVLYPLD-LYNDSAHYALTVFRKQFLYDEVEAEVN 55 (84)
Q Consensus 1 ~SLPwILtdhiL~~~~~~l~e~ilypLd-lYnDaA~~AL~~lk~q~LydEIeAEvn 55 (84)
|+++|+|..|--+ +..|-+ ||-+ .-++.+..|+.+|+++. .|||.++.
T Consensus 501 ~~~~~~LS~~~~d--e~~LG~---y~~~~f~d~~~~~a~~~F~~~L--~~ie~~I~ 549 (573)
T 3rde_A 501 MSITWQLGRCQPT--MVALGQ---HEEEYFSGPGPKAVLTKFREEL--AALDKDIE 549 (573)
T ss_dssp HHHHHHHHSCCTT--CCBTTC---CCCCCSCSHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHhcCCCCC--Cccccc---CCccccCCHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4677888777322 212211 2211 13678999999999987 57887754
No 10
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B
Probab=24.39 E-value=34 Score=28.79 Aligned_cols=48 Identities=19% Similarity=0.390 Sum_probs=29.3
Q ss_pred CCcchHHHHHhhccCCCchhhhhhhhhh-ccchhHHHHHHHHHhhhhHHHHHHHHH
Q psy7113 1 MSMPWILTDHILKTKEPSMMEYVLYPLD-LYNDSAHYALTVFRKQFLYDEVEAEVN 55 (84)
Q Consensus 1 ~SLPwILtdhiL~~~~~~l~e~ilypLd-lYnDaA~~AL~~lk~q~LydEIeAEvn 55 (84)
|+++|+|..|--+ +..|-+ ||-+ .-++++..|+.+|+++. .|||.++.
T Consensus 619 ~~~~~~LS~~~~d--e~~LG~---y~~~~f~d~~~~~a~~~F~~~L--~~ie~~I~ 667 (691)
T 3v98_A 619 LGAVWALSQFQEN--ELFLGM---YPEEHFIEKPVKEAMARFRKNL--EAIVSVIA 667 (691)
T ss_dssp HHHHHHHTCCCTT--CCBTTC---CCSCSCCCHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHhcCCCCC--Cccccc---CCccccCCHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4567777766321 111211 2211 13788999999999987 58887754
No 11
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A
Probab=23.38 E-value=40 Score=28.36 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=28.9
Q ss_pred CCcchHHHHHhhccCCCchhhhhhhhhh-ccchhHHHHHHHHHhhhhHHHHHHHHH
Q psy7113 1 MSMPWILTDHILKTKEPSMMEYVLYPLD-LYNDSAHYALTVFRKQFLYDEVEAEVN 55 (84)
Q Consensus 1 ~SLPwILtdhiL~~~~~~l~e~ilypLd-lYnDaA~~AL~~lk~q~LydEIeAEvn 55 (84)
|+++|+|..|--+ +..|-+ ||-+ .-++.+..|+.+|+++. .|||.++.
T Consensus 624 ~~~~~~LS~~~~d--e~~LG~---y~~~~~~~~~~~~a~~~F~~~L--~~ie~~I~ 672 (696)
T 3fg1_A 624 IATVYILTKFSED--ERYLGN---YSATAWEDKDALDAINRFQDKL--EDISKKIK 672 (696)
T ss_dssp HHHHHHHTCCCTT--CCBTTC---CTTCCCCCHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHhcCCCCC--cccccc---CCccccCCHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4567777766321 111111 2211 13678999999999987 57887754
No 12
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla}
Probab=20.90 E-value=47 Score=29.31 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=29.2
Q ss_pred CCcchHHHHHhhccCCCchhhhhhhhhh-ccchhHHHHHHHHHhhhhHHHHHHHHH
Q psy7113 1 MSMPWILTDHILKTKEPSMMEYVLYPLD-LYNDSAHYALTVFRKQFLYDEVEAEVN 55 (84)
Q Consensus 1 ~SLPwILtdhiL~~~~~~l~e~ilypLd-lYnDaA~~AL~~lk~q~LydEIeAEvn 55 (84)
|+++|+|..|--+ +..|-+ ||-+ .-++.+..|+.+|+++. .|||.++.
T Consensus 994 ~~~~~~LS~~~~d--e~~Lg~---y~~~~~~d~~~~~a~~~F~~~L--~~i~~~I~ 1042 (1066)
T 3dy5_A 994 IATVYILTKFSED--ERYLGN---YSATAWEDKDALDAINRFQDKL--EDISKKIK 1042 (1066)
T ss_dssp HHHHHHHTCCCTT--CCBTTC---CTTSCCCSHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHhcCCCCC--cccccc---CCccccCCHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4567777766321 111211 2221 13688999999999987 58888754
Done!