Query psy7113
Match_columns 84
No_of_seqs 52 out of 54
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 18:29:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7113.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7113hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0i_ f.23.17.1 (I:) Subunit 38.0 3.8 0.00028 22.0 0.3 8 3-10 10-17 (38)
2 d1alla_ a.1.1.3 (A:) Allophyco 31.4 24 0.0018 22.5 3.7 35 32-66 123-160 (160)
3 d1allb_ a.1.1.3 (B:) Allophyco 24.5 48 0.0035 21.1 4.2 38 28-65 120-160 (161)
4 d2p0ma1 a.119.1.2 (A:113-663) 20.7 24 0.0017 26.9 2.3 48 1-55 479-527 (551)
5 d1jboa_ a.1.1.3 (A:) Phycocyan 20.4 39 0.0029 21.6 3.1 39 28-66 123-162 (162)
6 d1kwia_ d.17.1.3 (A:) Cathelic 18.8 25 0.0018 20.0 1.6 15 30-44 4-18 (98)
7 d1di2a_ d.50.1.1 (A:) Double-s 18.3 23 0.0017 19.1 1.3 13 31-43 57-69 (69)
8 d1b8da_ a.1.1.3 (A:) Phycoeryt 16.8 74 0.0054 20.3 3.8 37 27-63 120-161 (164)
9 d2hkja2 d.14.1.3 (A:307-470) T 16.1 63 0.0046 21.4 3.4 23 47-69 127-149 (164)
10 d2dbsa1 d.374.1.1 (A:7-86) Hyp 15.7 20 0.0015 21.4 0.6 26 5-30 7-36 (80)
No 1
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=38.04 E-value=3.8 Score=21.96 Aligned_cols=8 Identities=38% Similarity=1.136 Sum_probs=6.3
Q ss_pred cchHHHHH
Q psy7113 3 MPWILTDH 10 (84)
Q Consensus 3 LPwILtdh 10 (84)
||||++--
T Consensus 10 LPwI~iPv 17 (38)
T d1jb0i_ 10 LPWIFIPV 17 (38)
T ss_dssp HHHHHHHH
T ss_pred cchhHHHH
Confidence 79998764
No 2
>d1alla_ a.1.1.3 (A:) Allophycocyanin alpha subunit {Spirulina platensis [TaxId: 118562]}
Probab=31.37 E-value=24 Score=22.47 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=25.3
Q ss_pred hhHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHH
Q psy7113 32 DSAHYALTVFR---KQFLYDEVEAEVNLCFDQFVYKLS 66 (84)
Q Consensus 32 DaA~~AL~~lk---~q~LydEIeAEvnLCfDq~v~kls 66 (84)
++-..|++.+| .+.|=.|-.+|++-+||.++--||
T Consensus 123 ~~~v~al~~mk~~~~~~ls~~~~~~~~~yfD~lI~~ls 160 (160)
T d1alla_ 123 EAIAEGVRAMKSVATSLLSGADAAEAGSYFDYLIGAMS 160 (160)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 34445666666 567777888999999999876553
No 3
>d1allb_ a.1.1.3 (B:) Allophycocyanin beta subunit {Spirulina platensis [TaxId: 118562]}
Probab=24.48 E-value=48 Score=21.11 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=26.3
Q ss_pred hccchhHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHH
Q psy7113 28 DLYNDSAHYALTVFRK---QFLYDEVEAEVNLCFDQFVYKL 65 (84)
Q Consensus 28 dlYnDaA~~AL~~lk~---q~LydEIeAEvnLCfDq~v~kl 65 (84)
++=-++...||+.+|. +.+=.|-.+|++-+||.++-.|
T Consensus 120 ~vp~~~~i~al~~mk~~~~~~~~~~~~~e~~~YfD~li~~L 160 (161)
T d1allb_ 120 GVPIGATVQAIQAMKEVTAGLVGGGAGKEMGIYFDYICSGL 160 (161)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHhHHHHHHHHc
Confidence 3444566677777774 4455677789999999987544
No 4
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=20.74 E-value=24 Score=26.88 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=27.8
Q ss_pred CCcchHHHHHhhccCCCchhhhhhhhhh-ccchhHHHHHHHHHhhhhHHHHHHHHH
Q psy7113 1 MSMPWILTDHILKTKEPSMMEYVLYPLD-LYNDSAHYALTVFRKQFLYDEVEAEVN 55 (84)
Q Consensus 1 ~SLPwILtdhiL~~~~~~l~e~ilypLd-lYnDaA~~AL~~lk~q~LydEIeAEvn 55 (84)
||++|+|..|--. +-.|-+ ||-+ ..+..+..|+.+|+++- .|||.+++
T Consensus 479 ~~~~~~Ls~~~~d--~~~LG~---~~~~~~~d~~~~~a~~~F~~~L--~~i~~~I~ 527 (551)
T d2p0ma1 479 MSIVWQLGRDQPI--MVPLGQ---HQEEYFSGPEPRAVLEKFREEL--AIMDKEIE 527 (551)
T ss_dssp HHHHHHHSCCCSS--CCBTTC---CCCCCCCSHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHhcCCCc--cccccC---CchhhccChHHHHHHHHHHHHH--HHHHHHHH
Confidence 3566666655211 111222 3333 35668889999999876 47776653
No 5
>d1jboa_ a.1.1.3 (A:) Phycocyanin alpha subunit {Synechococcus elongatus [TaxId: 32046]}
Probab=20.42 E-value=39 Score=21.59 Aligned_cols=39 Identities=26% Similarity=0.210 Sum_probs=28.1
Q ss_pred hccchhHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHH
Q psy7113 28 DLYNDSAHYALTVFRKQF-LYDEVEAEVNLCFDQFVYKLS 66 (84)
Q Consensus 28 dlYnDaA~~AL~~lk~q~-LydEIeAEvnLCfDq~v~kls 66 (84)
++-=++-..||..+|... +=-|..+|++=+||.++-.||
T Consensus 123 ~vp~~a~v~al~~mk~~~~~~~e~~~e~~~yfD~lI~~Ls 162 (162)
T d1jboa_ 123 DLSPSWYIEALKYIKANHGLTGQAAVEANAYIDYAINALS 162 (162)
T ss_dssp TCCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcc
Confidence 344466677788887654 556788999999999876543
No 6
>d1kwia_ d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=18.83 E-value=25 Score=20.03 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=12.3
Q ss_pred cchhHHHHHHHHHhh
Q psy7113 30 YNDSAHYALTVFRKQ 44 (84)
Q Consensus 30 YnDaA~~AL~~lk~q 44 (84)
|-.|+..|+.+++++
T Consensus 4 y~eav~~Al~~~N~~ 18 (98)
T d1kwia_ 4 YREAVLRAVDRLNEQ 18 (98)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC
Confidence 567888999998876
No 7
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}
Probab=18.34 E-value=23 Score=19.11 Aligned_cols=13 Identities=31% Similarity=0.324 Sum_probs=9.8
Q ss_pred chhHHHHHHHHHh
Q psy7113 31 NDSAHYALTVFRK 43 (84)
Q Consensus 31 nDaA~~AL~~lk~ 43 (84)
.+||..||..||+
T Consensus 57 q~AA~~aL~~L~s 69 (69)
T d1di2a_ 57 RVAAEKLLTKFKT 69 (69)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 3688888888874
No 8
>d1b8da_ a.1.1.3 (A:) Phycoerythrin alpha subunit {Red alga (Griffithsia monilis) [TaxId: 42003]}
Probab=16.81 E-value=74 Score=20.26 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=28.2
Q ss_pred hhccchhHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHH
Q psy7113 27 LDLYNDSAHYALTVFRK-----QFLYDEVEAEVNLCFDQFVY 63 (84)
Q Consensus 27 LdlYnDaA~~AL~~lk~-----q~LydEIeAEvnLCfDq~v~ 63 (84)
|++=-++...||+.+|. +-+=.|-.+|++=+||.++-
T Consensus 120 l~vp~~~~v~al~~lk~~~~~~~~~~~e~~~e~~~yfD~lI~ 161 (164)
T d1b8da_ 120 LNLPGSAYIAAFTFTRDRLCVPRDMSSQAGVEFTSALDYVIN 161 (164)
T ss_dssp TTCCHHHHHHHHHHHHHHCCTTTTSCHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHHHhcccCCHHHHHHHHhhHHHHHH
Confidence 44455677789999886 34667889999999999764
No 9
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=16.13 E-value=63 Score=21.35 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7113 47 YDEVEAEVNLCFDQFVYKLSEQI 69 (84)
Q Consensus 47 ydEIeAEvnLCfDq~v~klsd~i 69 (84)
++||+.|+.+..-+.-.+|+-.+
T Consensus 127 ~~EI~~EirlAl~~~~R~L~~~l 149 (164)
T d2hkja2 127 VEDIEKEIKNALMEVARKLKQYL 149 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999998888887665
No 10
>d2dbsa1 d.374.1.1 (A:7-86) Hypothetical protein TTHC002 {Thermus thermophilus [TaxId: 274]}
Probab=15.74 E-value=20 Score=21.39 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=19.5
Q ss_pred hHHHHHhhccCC----Cchhhhhhhhhhcc
Q psy7113 5 WILTDHILKTKE----PSMMEYVLYPLDLY 30 (84)
Q Consensus 5 wILtdhiL~~~~----~~l~e~ilypLdlY 30 (84)
=||++|.|+.+- |.---.|+.|||==
T Consensus 7 ~il~~~lle~~ll~elp~~yrlv~lpldep 36 (80)
T d2dbsa1 7 GVLMQYLLEADLLRELPPTYRLVLLPLDEP 36 (80)
T ss_dssp HHHHHHHHTTTCGGGSCSSCEEEEEETTCH
T ss_pred HHHHHHHHHhhHHhhCChhheeeecCCCCH
Confidence 489999999762 55566788888854
Done!