RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7113
(84 letters)
>gnl|CDD|218846 pfam05994, FragX_IP, Cytoplasmic Fragile-X interacting family.
CYFIP1/2 (Cytoplasmic fragile X mental retardation
interacting protein) like proteins for a highly
conserved protein family. The function of CYFIPs is
unclear, but CYFIP interaction with fragile X mental
retardation interacting protein (FMRP) involves the
domain of FMRP which also mediating homo- and
heteromerization.
Length = 815
Score = 142 bits (361), Expect = 2e-41
Identities = 49/79 (62%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 1 MSMPWILTDHILKTKEP-SMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFD 59
S+PWILTDHIL+T EP S+ E + YPL +YND+A YAL QFLYDE+EAE NLCFD
Sbjct: 251 TSLPWILTDHILETYEPPSLTEAIFYPLSIYNDAAQYALKKLNSQFLYDEIEAEANLCFD 310
Query: 60 QFVYKLSEQIFAHYKQLAA 78
Q VYKL++Q+F H K+ A
Sbjct: 311 QIVYKLADQVFTHIKEFAT 329
>gnl|CDD|215574 PLN03099, PIR, Protein PIR; Provisional.
Length = 1232
Score = 115 bits (290), Expect = 7e-32
Identities = 45/77 (58%), Positives = 62/77 (80%)
Query: 2 SMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQF 61
S+PW+L D+IL++++ ++E VL P D+YNDSA +AL V +++FLYDE+EAEV+LCFDQ
Sbjct: 601 SLPWMLVDYILESQDAGLLESVLLPFDIYNDSAQHALRVLKQRFLYDEIEAEVDLCFDQL 660
Query: 62 VYKLSEQIFAHYKQLAA 78
V KLSE IF +YK AA
Sbjct: 661 VSKLSESIFTYYKSRAA 677
>gnl|CDD|215479 PLN02887, PLN02887, hydrolase family protein.
Length = 580
Score = 26.4 bits (58), Expect = 1.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 47 YDEVEAEVNLCFDQFVYKLSEQ 68
YD VE V LC D F+ KL+++
Sbjct: 157 YDSVELSVMLCNDDFIRKLNKE 178
>gnl|CDD|214987 smart01036, BP28CT, BP28CT (NUC211) domain. This C-terminal
domain is found in BAP28-like nucleolar proteins.
Length = 151
Score = 26.1 bits (58), Expect = 2.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 48 DEVEAEVNLCFDQFVYKLSEQIF 70
D VEA V CF V KL+E F
Sbjct: 36 DRVEASVIDCFISMVLKLNEATF 58
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 26.1 bits (57), Expect = 2.8
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 9 DHILKTKEPSMM--------EYVLYPLDLYNDSAHYALTVFRKQFLYDEV 50
+HI +++ PS+ ++VL +LY D + V K Y EV
Sbjct: 12 EHIFRSRYPSVPVPDKLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEV 61
>gnl|CDD|219728 pfam08146, BP28CT, BP28CT (NUC211) domain. This C terminal
domain is found in BAP28-like nucleolar proteins.
Length = 149
Score = 24.9 bits (55), Expect = 4.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 48 DEVEAEVNLCFDQFVYKLSEQIF 70
DE+EA V F V KL+E F
Sbjct: 35 DEIEASVISAFVTMVLKLNESTF 57
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase. DXP
synthase is a thiamine diphosphate-dependent enzyme
related to transketolase and the pyruvate dehydrogenase
E1-beta subunit. By an acyloin condensation of pyruvate
with glyceraldehyde 3-phosphate, it produces
1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine
diphosphate (TPP), pyridoxal phosphate, and the
isoprenoid building block isopentenyl diphosphate (IPP)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other, Biosynthesis of cofactors, prosthetic
groups, and carriers, Pyridoxine, Biosynthesis of
cofactors, prosthetic groups, and carriers, Thiamine].
Length = 617
Score = 25.1 bits (55), Expect = 5.5
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 52 AEVNLCFDQFVYKLSEQIFAHYKQLAARF 80
N DQF++ + Q + H K L R
Sbjct: 55 YVFNTPKDQFIWDVGHQAYPH-KLLTGRR 82
>gnl|CDD|152569 pfam12134, PRP8_domainIV, PRP8 domain IV core. This domain is
found in eukaryotes, and is about 20 amino acids in
length. It is found associated with pfam10597,
pfam10596, pfam10598, pfam08083, pfam08082, pfam01398,
pfam08084. There is a conserved LILR sequence motif. The
domain is a selenomethionine domain in a subunit of the
spliceosome. The function of PRP8 domain IV is believed
to be interaction with the splicosomal core.
Length = 231
Score = 24.7 bits (54), Expect = 7.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 7 LTDHILKTKEPSMMEYVLY 25
L D +LK EP M+ + LY
Sbjct: 143 LGDLVLKATEPQMVLFNLY 161
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase.
Length = 639
Score = 24.4 bits (53), Expect = 9.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 23 VLYPLDLYNDSAHYALTVFRKQFLYDEVEA 52
VL P+ LY D + T K+ ++V A
Sbjct: 17 VLSPILLYTDRLSASFTPSSKRDFLEDVTA 46
>gnl|CDD|225420 COG2865, COG2865, Predicted transcriptional regulator containing an
HTH domain and an uncharacterized domain shared with the
mammalian protein Schlafen [Transcription].
Length = 467
Score = 24.2 bits (53), Expect = 9.5
Identities = 12/62 (19%), Positives = 23/62 (37%)
Query: 18 SMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLA 77
M E L + D+ + + + K DE E +V + + + E+I K+
Sbjct: 356 LMEENGLPKPEFEEDNDYVTVILHGKGENEDETEEKVTRQEETSLSERQEKILELIKENG 415
Query: 78 AR 79
Sbjct: 416 KV 417
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.137 0.432
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,265,299
Number of extensions: 333470
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 14
Length of query: 84
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 32
Effective length of database: 8,631,194
Effective search space: 276198208
Effective search space used: 276198208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)