RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7113
         (84 letters)



>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization,
           protein binding; 2.29A {Homo sapiens}
          Length = 1253

 Score =  136 bits (342), Expect = 3e-39
 Identities = 66/78 (84%), Positives = 72/78 (92%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKE SMMEYVLY LDLYNDSAHYALT F KQFLYDE+EAEVNLCFDQ
Sbjct: 642 MSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQ 701

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKL++QIFA+YK +A 
Sbjct: 702 FVYKLADQIFAYYKVMAG 719


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.4 bits (65), Expect = 0.11
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 4   PWILTDHILKTKEPSMM--EYVLYPLDLYNDSAHYA-LTVFRKQ 44
            ++++    + ++PSMM   Y+     LYND+  +A   V R Q
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135



 Score = 25.6 bits (55), Expect = 2.6
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 13/78 (16%)

Query: 9   DHILKTKEPSMMEYVLY-PLDLYNDSAHYAL--TVFRK--QFLYDEVEAEVN---LCFDQ 60
           DHI+ +K+       L+  L    +         V R   +FL   ++ E     +    
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 61  FVYKLSE-----QIFAHY 73
           ++ +        Q+FA Y
Sbjct: 112 YIEQRDRLYNDNQVFAKY 129


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
          synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 0.57
 Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 15/59 (25%)

Query: 33 SAHYALTVFRKQFLY------------DEVEAEVNLC--FDQFV-YKLSEQIFAHYKQL 76
          ++ +  +  ++QF              DE      L   F  +V   +       + Q+
Sbjct: 25 ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83



 Score = 24.2 bits (52), Expect = 6.9
 Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 10/55 (18%)

Query: 27   LDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARFT 81
            +DLY  S        +   +++   A+ +   D + + + + +  +   L   F 
Sbjct: 1633 MDLYKTSK-----AAQD--VWN--RADNHF-KDTYGFSILDIVINNPVNLTIHFG 1677



 Score = 23.9 bits (51), Expect = 8.6
 Identities = 5/22 (22%), Positives = 8/22 (36%)

Query: 60 QFVYKLSEQIFAHYKQLAARFT 81
          + V  +    F    QL  +F 
Sbjct: 17 EHVLLVPTASFFIASQLQEQFN 38


>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis,
           lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB:
           3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A
           2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A*
           3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
          Length = 624

 Score = 24.4 bits (52), Expect = 6.7
 Identities = 14/53 (26%), Positives = 17/53 (32%)

Query: 27  LDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAAR 79
           L    D     L    K+F   EVE       DQ    L  +I    + L  R
Sbjct: 568 LKGLGDVNVEELFGISKEFWEKEVEEIDKYLEDQVNADLPYEIERELRALKQR 620


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 24.1 bits (51), Expect = 6.7
 Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 8/29 (27%)

Query: 12 LKTKEPSMMEYVLYPLDLYNDSAHYALTV 40
          LK  + S        L LY D +  AL +
Sbjct: 22 LKKLQAS--------LKLYADDSAPALAI 42


>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer,
           lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB:
           2fah_A* 2qzy_A*
          Length = 608

 Score = 24.0 bits (51), Expect = 7.8
 Identities = 10/53 (18%), Positives = 15/53 (28%)

Query: 27  LDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAAR 79
           L       +  L    K F  +E         + F   L   + A  + L  R
Sbjct: 552 LGGLPGVDYSQLFPMEKGFWEEECRQLREYYGENFGADLPRDVMAELEGLEER 604


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0708    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,280,104
Number of extensions: 58566
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 14
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)