RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7113
         (84 letters)



>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 253

 Score = 25.1 bits (55), Expect = 1.2
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLY 25
           MS+   L+D ++K  EP M+ + +Y
Sbjct: 135 MSID-KLSDVVMKATEPQMVLFNIY 158


>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 219

 Score = 23.6 bits (51), Expect = 3.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 6   ILTDHILKTKEPSMMEYVLY 25
              D ILK  EP M+ + LY
Sbjct: 131 KFGDLILKATEPQMVLFNLY 150


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 314,664
Number of extensions: 11677
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 6
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)