Query psy7114
Match_columns 134
No_of_seqs 178 out of 2226
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 18:30:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6l_A DNAJ homolog subfamily 100.0 3.7E-37 1.3E-41 217.4 10.5 128 1-133 10-147 (155)
2 1hdj_A Human HSP40, HDJ-1; mol 99.9 3.8E-23 1.3E-27 129.7 7.4 68 1-68 3-72 (77)
3 2och_A Hypothetical protein DN 99.9 1.9E-23 6.4E-28 130.0 5.9 65 1-65 8-72 (73)
4 2ctp_A DNAJ homolog subfamily 99.9 4.4E-23 1.5E-27 129.7 5.8 67 1-67 7-75 (78)
5 2ctr_A DNAJ homolog subfamily 99.9 1.5E-22 5.2E-27 130.1 7.6 69 1-69 7-77 (88)
6 2dn9_A DNAJ homolog subfamily 99.9 6.4E-23 2.2E-27 129.2 5.7 67 1-67 7-76 (79)
7 2cug_A Mkiaa0962 protein; DNAJ 99.9 1.1E-22 3.6E-27 130.9 6.5 67 1-67 17-85 (88)
8 2o37_A Protein SIS1; HSP40, J- 99.9 1.4E-22 4.9E-27 131.3 6.5 70 1-70 8-77 (92)
9 2ej7_A HCG3 gene; HCG3 protein 99.9 9E-23 3.1E-27 129.4 4.9 66 1-66 9-78 (82)
10 2yua_A Williams-beuren syndrom 99.9 2.1E-22 7.1E-27 132.1 6.0 67 1-67 17-86 (99)
11 2lgw_A DNAJ homolog subfamily 99.9 4.2E-22 1.5E-26 130.7 7.4 68 1-68 2-73 (99)
12 2ctq_A DNAJ homolog subfamily 99.9 3.2E-22 1.1E-26 134.0 6.9 68 1-68 20-90 (112)
13 2dmx_A DNAJ homolog subfamily 99.9 4.1E-22 1.4E-26 129.0 6.6 68 1-68 9-80 (92)
14 1wjz_A 1700030A21RIK protein; 99.9 1.6E-22 5.6E-27 131.2 4.4 67 1-67 16-91 (94)
15 2ctw_A DNAJ homolog subfamily 99.9 7.5E-22 2.6E-26 131.6 7.3 68 1-68 17-87 (109)
16 1bq0_A DNAJ, HSP40; chaperone, 99.8 4.1E-22 1.4E-26 131.6 2.5 68 1-68 3-73 (103)
17 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 2.6E-21 8.7E-26 128.9 5.8 66 1-66 15-87 (109)
18 3apq_A DNAJ homolog subfamily 99.8 1.6E-20 5.4E-25 136.6 6.4 68 1-68 2-72 (210)
19 1fpo_A HSC20, chaperone protei 99.8 9.9E-21 3.4E-25 135.3 2.6 68 1-68 1-78 (171)
20 3hho_A CO-chaperone protein HS 99.8 1.9E-20 6.4E-25 134.2 3.1 68 1-68 4-81 (174)
21 2ys8_A RAB-related GTP-binding 99.8 2.8E-20 9.7E-25 120.0 3.7 58 1-58 27-86 (90)
22 3bvo_A CO-chaperone protein HS 99.8 9.7E-20 3.3E-24 133.7 3.3 67 1-67 43-119 (207)
23 3lz8_A Putative chaperone DNAJ 99.8 3.9E-20 1.3E-24 144.1 0.0 66 1-66 28-95 (329)
24 1gh6_A Large T antigen; tumor 99.8 2.5E-21 8.7E-26 130.0 -5.8 64 1-65 8-73 (114)
25 2pf4_E Small T antigen; PP2A, 99.7 3.7E-20 1.3E-24 132.3 -2.1 64 2-66 12-77 (174)
26 1faf_A Large T antigen; J doma 99.7 3.8E-19 1.3E-23 112.1 1.4 57 2-59 12-70 (79)
27 3uo3_A J-type CO-chaperone JAC 99.7 1.6E-18 5.4E-23 124.9 3.3 64 1-64 11-81 (181)
28 1iur_A KIAA0730 protein; DNAJ 99.7 1.3E-18 4.5E-23 111.7 1.3 56 2-57 17-76 (88)
29 1n4c_A Auxilin; four helix bun 99.7 1.9E-18 6.4E-23 124.2 1.2 59 2-60 118-182 (182)
30 3ag7_A Putative uncharacterize 99.7 8.5E-18 2.9E-22 111.4 3.8 54 1-55 41-104 (106)
31 2qwo_B Putative tyrosine-prote 99.7 4.2E-18 1.4E-22 110.1 2.2 52 2-53 34-91 (92)
32 2guz_A Mitochondrial import in 99.7 1.9E-18 6.5E-23 106.8 0.0 55 2-57 15-70 (71)
33 2jr7_A DPH3 homolog; DESR1, CS 99.7 3E-17 1E-21 104.7 4.0 57 73-133 3-59 (89)
34 1yop_A KTI11P; zinc finger, me 99.7 4.1E-17 1.4E-21 103.0 3.7 56 74-133 4-59 (83)
35 1wge_A Hypothetical protein 26 99.7 6.8E-17 2.3E-21 102.0 4.7 58 72-133 9-66 (83)
36 3apo_A DNAJ homolog subfamily 99.7 1E-17 3.5E-22 141.7 0.4 68 1-68 21-91 (780)
37 2y4t_A DNAJ homolog subfamily 99.2 1.5E-11 5E-16 95.3 4.5 62 1-62 382-449 (450)
38 2guz_B Mitochondrial import in 99.0 1.4E-10 4.8E-15 70.1 3.0 50 4-54 7-59 (65)
39 2pzi_A Probable serine/threoni 93.5 0.047 1.6E-06 45.3 3.3 45 1-50 629-675 (681)
40 4ayb_P DNA-directed RNA polyme 93.3 0.025 8.5E-07 31.3 0.9 32 94-132 4-36 (48)
41 2e2z_A TIM15; protein import, 91.0 0.2 7E-06 32.0 3.2 36 92-131 12-50 (100)
42 2avu_E Flagellar transcription 86.8 0.4 1.4E-05 34.2 2.7 28 93-127 134-162 (192)
43 2ctt_A DNAJ homolog subfamily 71.6 1.6 5.4E-05 27.5 1.4 24 102-125 8-34 (104)
44 3h0g_L DNA-directed RNA polyme 63.5 1.7 5.8E-05 25.4 0.2 31 92-132 20-51 (63)
45 1twf_L ABC10-alpha, DNA-direct 61.5 2 6.8E-05 25.6 0.3 32 91-132 26-58 (70)
46 2d7l_A WD repeat and HMG-box D 57.6 22 0.00077 21.2 4.7 43 19-63 17-59 (81)
47 2eqz_A High mobility group pro 55.4 29 0.00099 20.6 5.0 42 20-61 28-69 (86)
48 1ckt_A High mobility group 1 p 54.4 27 0.00093 19.7 4.9 41 21-61 15-55 (71)
49 1qqr_A Streptokinase domain B; 53.2 7.1 0.00024 26.2 2.0 30 4-33 35-64 (138)
50 2b7e_A PRE-mRNA processing pro 46.5 39 0.0013 19.2 5.0 50 16-65 3-57 (59)
51 2gmg_A Hypothetical protein PF 45.8 7.3 0.00025 25.0 1.1 25 92-126 66-91 (105)
52 2lcq_A Putative toxin VAPC6; P 44.3 6.7 0.00023 26.6 0.8 32 90-132 129-161 (165)
53 2kdx_A HYPA, hydrogenase/ureas 42.8 15 0.00052 23.5 2.3 25 93-128 73-99 (119)
54 1wee_A PHD finger family prote 39.9 34 0.0012 19.7 3.4 28 93-131 16-43 (72)
55 1xou_B Z5138 gene product; coi 39.8 48 0.0016 19.9 4.0 46 18-68 34-79 (95)
56 3a43_A HYPD, hydrogenase nicke 39.4 21 0.00073 23.6 2.7 14 93-106 70-84 (139)
57 1nlt_A Protein YDJ1, mitochond 37.1 6.9 0.00023 28.6 -0.1 26 101-126 17-45 (248)
58 4a3n_A Transcription factor SO 36.5 56 0.0019 18.2 5.9 41 19-61 14-54 (71)
59 3u6p_A Formamidopyrimidine-DNA 35.6 35 0.0012 25.2 3.6 26 94-126 246-272 (273)
60 2yrq_A High mobility group pro 35.3 82 0.0028 21.1 5.3 43 20-62 28-70 (173)
61 1uzc_A Hypothetical protein FL 32.8 75 0.0026 18.5 5.6 56 11-66 10-68 (71)
62 2kzi_A Engineered protein, ZHE 32.7 41 0.0014 19.7 2.8 32 2-36 24-55 (70)
63 1i11_A Transcription factor SO 32.5 74 0.0025 18.3 5.2 44 19-64 16-59 (81)
64 2cs1_A PMS1 protein homolog 1; 32.4 81 0.0028 18.8 5.5 42 20-63 20-61 (92)
65 1wgf_A Upstream binding factor 32.3 81 0.0028 18.7 4.5 42 20-63 33-74 (90)
66 3tq6_A Transcription factor A, 30.4 1.3E+02 0.0043 21.1 5.8 41 20-62 22-62 (214)
67 3tmm_A Transcription factor A, 30.3 1.2E+02 0.0041 21.6 5.7 40 21-62 55-94 (238)
68 2akl_A PHNA-like protein PA012 30.1 15 0.00052 24.5 0.7 23 95-127 29-52 (138)
69 3f27_D Transcription factor SO 30.0 83 0.0028 18.1 6.0 41 19-61 18-58 (83)
70 2crj_A SWI/SNF-related matrix- 29.8 91 0.0031 18.5 6.3 43 19-63 19-61 (92)
71 2fiy_A Protein FDHE homolog; F 29.8 61 0.0021 24.5 4.1 17 117-133 251-267 (309)
72 1vq8_S 50S ribosomal protein L 28.6 39 0.0013 20.6 2.4 21 6-26 26-46 (85)
73 1gt0_D Transcription factor SO 28.6 87 0.003 17.9 4.2 41 20-62 15-55 (80)
74 1r5q_A KAI A, circadian oscill 28.6 1.1E+02 0.0038 19.1 4.6 33 16-48 12-44 (102)
75 2lxi_A RNA-binding protein 10; 27.8 48 0.0016 19.5 2.7 20 7-26 7-26 (91)
76 2e6o_A HMG box-containing prot 27.7 97 0.0033 18.2 4.3 41 19-61 29-69 (87)
77 1aab_A High mobility group pro 26.7 32 0.0011 20.1 1.7 43 21-63 21-63 (83)
78 2zjr_Q 50S ribosomal protein L 26.6 43 0.0015 20.8 2.3 21 6-26 26-46 (95)
79 3r8s_T 50S ribosomal protein L 26.3 44 0.0015 20.7 2.4 20 6-25 31-50 (93)
80 3qwo_C Motavizumab epitope sca 26.3 49 0.0017 18.6 2.3 28 3-33 10-37 (57)
81 1wz6_A HMG-box transcription f 25.9 95 0.0032 17.9 3.8 42 19-62 19-60 (82)
82 2co9_A Thymus high mobility gr 25.6 1.2E+02 0.004 18.5 5.3 41 20-62 30-70 (102)
83 1v2z_A Circadian clock protein 25.6 1.3E+02 0.0046 19.1 4.8 33 16-48 19-51 (111)
84 1vq8_Z 50S ribosomal protein L 25.0 67 0.0023 19.4 3.0 28 93-129 27-55 (83)
85 1ug2_A 2610100B20RIK gene prod 24.7 48 0.0017 20.6 2.3 20 12-31 67-86 (95)
86 3j21_T 50S ribosomal protein L 24.6 51 0.0017 20.1 2.4 20 6-25 27-46 (86)
87 1ee8_A MUTM (FPG) protein; bet 24.5 34 0.0012 25.1 1.8 26 94-126 236-262 (266)
88 3tve_T 50S ribosomal protein L 24.2 52 0.0018 20.3 2.4 20 6-25 25-44 (92)
89 1j46_A SRY, sex-determining re 24.1 1.1E+02 0.0039 17.7 4.5 40 20-61 17-56 (85)
90 4euw_A Transcription factor SO 23.5 1.4E+02 0.0046 18.4 5.1 42 19-62 41-82 (106)
91 2xzf_A Formamidopyrimidine-DNA 23.1 31 0.0011 25.4 1.4 26 94-126 243-269 (271)
92 1k82_A Formamidopyrimidine-DNA 23.0 32 0.0011 25.3 1.4 26 94-126 241-267 (268)
93 3eyy_A Putative iron uptake re 22.9 1.3E+02 0.0045 19.4 4.4 18 92-109 89-107 (145)
94 2lef_A LEF-1 HMG, protein (lym 22.8 1.2E+02 0.0042 17.6 4.9 40 20-61 15-54 (86)
95 1k3x_A Endonuclease VIII; hydr 22.1 34 0.0012 25.0 1.4 26 94-126 235-261 (262)
96 1iqt_A AUF1, heterogeneous nuc 21.3 79 0.0027 17.2 2.7 19 7-25 5-23 (75)
97 3u2b_C Transcription factor SO 20.8 1.3E+02 0.0043 17.1 4.9 41 19-61 14-54 (79)
98 3nm9_A HMG-D, high mobility gr 20.8 1.2E+02 0.0042 16.9 5.6 40 20-64 16-55 (73)
99 1k99_A Upstream binding factor 20.6 1.5E+02 0.0052 17.9 5.1 43 20-64 23-65 (99)
100 3rh2_A Hypothetical TETR-like 20.1 1.9E+02 0.0065 18.8 5.4 39 14-52 173-211 (212)
No 1
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=100.00 E-value=3.7e-37 Score=217.38 Aligned_cols=128 Identities=31% Similarity=0.679 Sum_probs=113.9
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC--H-------HHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhcc
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--S-------EHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH 71 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~--~-------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 71 (134)
+|||+||||+++|+.++||++||++++++||||. . .+.+.|+.|++||++|+||.+|+.||..+.......
T Consensus 10 ~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~~~~ 89 (155)
T 2l6l_A 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDDLRN 89 (155)
T ss_dssp SHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHHHHT
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhhccc
Confidence 4799999999999999999999999999999991 1 357899999999999999999999999887765543
Q ss_pred -cccccccCcccccccCCceeEEeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEec
Q psy7114 72 -MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITA 133 (134)
Q Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~crcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~~ 133 (134)
++....+.+++|.+.++...|+++||||+.|.++.+++..| .+|.|++|||||.|..
T Consensus 90 ~~~~~~~~~~~~m~~~e~~~~f~~~CrCG~~f~i~~~~l~~~-----~~v~C~sCSl~~~v~~ 147 (155)
T 2l6l_A 90 VGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEEV-----SLISCDTCSLIIELLH 147 (155)
T ss_dssp TCSSSEEEETTTSEEETTTTEEEEECSSSCEEEEETTHHHHC-----CEEECSSSSCEEEEEC
T ss_pred cccccceeeHHHhccccCCcEEEEcCCCCCeEEecHHHhCCC-----CEEECCCCceEEEEEE
Confidence 55566777889999988899999999999999999999875 6899999999999963
No 2
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.89 E-value=3.8e-23 Score=129.73 Aligned_cols=68 Identities=29% Similarity=0.534 Sum_probs=63.3
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
.|||+||||+++|+.++||++|+++++++|||+ .+.+.+.|+.|++||++|+||.+|..||.++.+..
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 72 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL 72 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence 489999999999999999999999999999999 45788999999999999999999999999887643
No 3
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.89 E-value=1.9e-23 Score=129.95 Aligned_cols=65 Identities=32% Similarity=0.668 Sum_probs=60.6
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLL 65 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 65 (134)
.|||+||||+++|+.++||++|+++++++|||+.+.+.+.|+.|++||++|+||.+|..||..|.
T Consensus 8 ~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 47999999999999999999999999999999966667899999999999999999999999875
No 4
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=4.4e-23 Score=129.72 Aligned_cols=67 Identities=31% Similarity=0.537 Sum_probs=62.8
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ 67 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 67 (134)
.|||+||||+++|+.++||++|+++++++|||+ .+.+.+.|+.|++||++|+||.+|..||..+...
T Consensus 7 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 7 GDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 489999999999999999999999999999999 4678999999999999999999999999987653
No 5
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=130.10 Aligned_cols=69 Identities=30% Similarity=0.514 Sum_probs=64.2
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ 69 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 69 (134)
+|||+||||+++|+.++||++|+++++++|||+ .+.+.+.|+.|++||++|+||.+|..||..+.....
T Consensus 7 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 77 (88)
T 2ctr_A 7 GSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFT 77 (88)
T ss_dssp CSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHT
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 489999999999999999999999999999999 567889999999999999999999999999876543
No 6
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=6.4e-23 Score=129.24 Aligned_cols=67 Identities=34% Similarity=0.570 Sum_probs=62.2
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ 67 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 67 (134)
.|||+||||+++|+.++||++|+++++++|||+ .+.+.+.|+.|++||++|+||.+|..||.++...
T Consensus 7 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 7 GDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp SCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 489999999999999999999999999999999 3567899999999999999999999999987643
No 7
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=1.1e-22 Score=130.85 Aligned_cols=67 Identities=27% Similarity=0.571 Sum_probs=62.6
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ 67 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 67 (134)
+|||+||||+++|+.++||++|+++++++|||+ .+.+.+.|+.|++||++|+||.+|..||.++...
T Consensus 17 ~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 17 FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999 4578899999999999999999999999998653
No 8
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.4e-22 Score=131.28 Aligned_cols=70 Identities=31% Similarity=0.619 Sum_probs=64.4
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhhhc
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQT 70 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 70 (134)
.|||+||||+++|+.++||++|+++++++|||+.+.+.+.|+.|++||++|+||.+|..||.++......
T Consensus 8 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 77 (92)
T 2o37_A 8 TKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAARS 77 (92)
T ss_dssp CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence 3799999999999999999999999999999996666789999999999999999999999998876543
No 9
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=9e-23 Score=129.40 Aligned_cols=66 Identities=35% Similarity=0.659 Sum_probs=61.2
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhccChHHHHHHHHHhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKLYESQLLS 66 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 66 (134)
+|||+||||+++|+.++||++|+++++++|||+. +.+.+.|+.|++||++|+||.+|..||.++..
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 78 (82)
T 2ej7_A 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG 78 (82)
T ss_dssp CCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 4899999999999999999999999999999993 35678999999999999999999999998764
No 10
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.1e-22 Score=132.12 Aligned_cols=67 Identities=30% Similarity=0.539 Sum_probs=61.7
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ 67 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 67 (134)
+|||+||||+++|+.++||++|+++++++|||+ .+.+.++|+.|++||++|+||.+|..||..+...
T Consensus 17 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 86 (99)
T 2yua_A 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSD 86 (99)
T ss_dssp SHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence 479999999999999999999999999999999 4567899999999999999999999999876543
No 11
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.86 E-value=4.2e-22 Score=130.74 Aligned_cols=68 Identities=28% Similarity=0.551 Sum_probs=61.9
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
+|||+||||+++|+.++||++|+++++++|||+. +.+.+.|+.|++||++|+||.+|..||..+....
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~ 73 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGL 73 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC--
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence 4899999999999999999999999999999992 4578999999999999999999999999987654
No 12
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.2e-22 Score=133.97 Aligned_cols=68 Identities=34% Similarity=0.524 Sum_probs=63.3
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
+|||+||||+++|+.++||++||++++++|||+ .+.+.++|+.|++||++|+||.+|..||..+....
T Consensus 20 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 90 (112)
T 2ctq_A 20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM 90 (112)
T ss_dssp CCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence 489999999999999999999999999999999 34678999999999999999999999999988654
No 13
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.1e-22 Score=128.97 Aligned_cols=68 Identities=35% Similarity=0.653 Sum_probs=62.6
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
+|||+||||+++|+.++||++|+++++++|||+. +.+.++|+.|++||++|+||.+|..||..+....
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (92)
T 2dmx_A 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSW 80 (92)
T ss_dssp CCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSS
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence 4899999999999999999999999999999992 4678999999999999999999999999886543
No 14
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.86 E-value=1.6e-22 Score=131.21 Aligned_cols=67 Identities=34% Similarity=0.713 Sum_probs=62.3
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCC---------HHHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---------SEHQEMFLKINEAWNILKDEKERKLYESQLLSQ 67 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~---------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 67 (134)
.|||+||||+++|+.++||++|+++++++|||+. +.+.+.|+.|++||++|+||.+|..||..+...
T Consensus 16 ~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 91 (94)
T 1wjz_A 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP 91 (94)
T ss_dssp SCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCC
Confidence 4899999999999999999999999999999992 567899999999999999999999999987653
No 15
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=7.5e-22 Score=131.60 Aligned_cols=68 Identities=37% Similarity=0.606 Sum_probs=63.2
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
.+||+||||+++|+.++||++|+++++++|||+ .+.+.++|+.|++||++|+||.+|..||..+....
T Consensus 17 ~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~ 87 (109)
T 2ctw_A 17 ESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL 87 (109)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence 479999999999999999999999999999999 45678999999999999999999999999887654
No 16
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.84 E-value=4.1e-22 Score=131.57 Aligned_cols=68 Identities=32% Similarity=0.592 Sum_probs=63.1
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
.|||+||||+++|+.++||++|+++++++|||+ .+.+.++|+.|++||++|+||.+|..||..+....
T Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 73 (103)
T 1bq0_A 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF 73 (103)
T ss_dssp CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSS
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhh
Confidence 489999999999999999999999999999999 35678999999999999999999999999987654
No 17
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.84 E-value=2.6e-21 Score=128.89 Aligned_cols=66 Identities=27% Similarity=0.453 Sum_probs=61.6
Q ss_pred CCccccccCCCCC-CHHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHHHHhccChHHHHHHHHHhhh
Q psy7114 1 MNHFEILNCNVNS-TLEEIKENYKSLILKYHPDKN------SEHQEMFLKINEAWNILKDEKERKLYESQLLS 66 (134)
Q Consensus 1 ~~~Y~vLgv~~~a-s~~~Ik~ayr~l~~~~HPDk~------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 66 (134)
+|||+||||+++| +.++||++||++++++|||+. +.+.+.|+.|++||++|+||.+|..||..+..
T Consensus 15 ~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp SCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 4899999999999 999999999999999999983 45789999999999999999999999999864
No 18
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.81 E-value=1.6e-20 Score=136.61 Aligned_cols=68 Identities=38% Similarity=0.592 Sum_probs=63.5
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
+|||+||||+++|+.++||+|||++++++|||+ .+.+.++|+.|++||++|+||.+|+.||.++....
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~ 72 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 72 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccc
Confidence 589999999999999999999999999999999 45688999999999999999999999999987654
No 19
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.80 E-value=9.9e-21 Score=135.29 Aligned_cols=68 Identities=24% Similarity=0.382 Sum_probs=61.2
Q ss_pred CCccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114 1 MNHFEILNCNVNS--TLEEIKENYKSLILKYHPDKNS--------EHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~vLgv~~~a--s~~~Ik~ayr~l~~~~HPDk~~--------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
||||+||||++++ +.++||++||++++++|||+.+ .+.+.|..|++||++|+||.+|..||..+....
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~ 78 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFD 78 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCC
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCC
Confidence 6899999999999 9999999999999999999921 245789999999999999999999999877443
No 20
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.79 E-value=1.9e-20 Score=134.19 Aligned_cols=68 Identities=25% Similarity=0.389 Sum_probs=61.1
Q ss_pred CCccccccCCCCCC--HHHHHHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114 1 MNHFEILNCNVNST--LEEIKENYKSLILKYHPDKNS--------EHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~vLgv~~~as--~~~Ik~ayr~l~~~~HPDk~~--------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
+|||+||||+++++ .++||++||++++++|||+.+ .+.+.|..|++||++|+||.+|..||..+....
T Consensus 4 ~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~ 81 (174)
T 3hho_A 4 MNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQGIE 81 (174)
T ss_dssp CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCC
T ss_pred CCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHccCCC
Confidence 58999999999998 999999999999999999921 256899999999999999999999999886543
No 21
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-20 Score=119.99 Aligned_cols=58 Identities=19% Similarity=0.406 Sum_probs=54.1
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHH
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERK 58 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~ 58 (134)
.|||+||||+++|+.++||++||++++++|||+ .+.+.++|+.|++||++|+||.+|.
T Consensus 27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence 489999999999999999999999999999999 4678899999999999999998764
No 22
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.77 E-value=9.7e-20 Score=133.68 Aligned_cols=67 Identities=24% Similarity=0.355 Sum_probs=59.2
Q ss_pred CCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHhccChHHHHHHHHHhhhh
Q psy7114 1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDKNS--------EHQEMFLKINEAWNILKDEKERKLYESQLLSQ 67 (134)
Q Consensus 1 ~~~Y~vLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~--------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 67 (134)
+|||+||||+++ ++.++||++||+|++++|||+.+ .+.++|+.|++||++|+||.+|..||..+...
T Consensus 43 ~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~ 119 (207)
T 3bvo_A 43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGI 119 (207)
T ss_dssp CCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTC
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 589999999986 78999999999999999999921 25678999999999999999999999876643
No 23
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.76 E-value=3.9e-20 Score=144.10 Aligned_cols=66 Identities=33% Similarity=0.629 Sum_probs=0.0
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLS 66 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 66 (134)
+|||+||||+++|+.++||+|||+|++++|||+ .+.+.++|++|++||++|+||.+|+.||.++..
T Consensus 28 ~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 95 (329)
T 3lz8_A 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH 95 (329)
T ss_dssp --------------------------------------------------------------------
T ss_pred cCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence 489999999999999999999999999999999 456788999999999999999999999998544
No 24
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.76 E-value=2.5e-21 Score=129.97 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=58.3
Q ss_pred CCccccccCCCCCCH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHhh
Q psy7114 1 MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLL 65 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 65 (134)
+++|+||||+++|+. ++||+|||+|++++|||+.+. .++|++|++||++|+||.+|+.||.++.
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 368999999999999 999999999999999999554 5789999999999999999999987654
No 25
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.75 E-value=3.7e-20 Score=132.32 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=57.1
Q ss_pred CccccccCCCCCC--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHhhh
Q psy7114 2 NHFEILNCNVNST--LEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLS 66 (134)
Q Consensus 2 ~~Y~vLgv~~~as--~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 66 (134)
|+|+||||+++|+ .++||+|||++++++|||+.+. .++|++|++||++|+||.+|+.||.++..
T Consensus 12 d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~-~e~F~~I~~AYevLsdp~kR~~YD~~G~~ 77 (174)
T 2pf4_E 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGGF 77 (174)
T ss_dssp HHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C-CTTTTHHHHHHHHHHHHHHHHTSCGGGGC
T ss_pred cHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHhccCCc
Confidence 6899999999999 5999999999999999999544 57899999999999999999999998863
No 26
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.73 E-value=3.8e-19 Score=112.15 Aligned_cols=57 Identities=23% Similarity=0.424 Sum_probs=52.4
Q ss_pred CccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHH
Q psy7114 2 NHFEILNCNVN--STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKL 59 (134)
Q Consensus 2 ~~Y~vLgv~~~--as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~ 59 (134)
++|+||||+++ ++.++||++||++++++|||+.. +.++|++|++||++|+|+.+|..
T Consensus 12 ~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~-~~~~f~~i~~AYe~L~~~~~r~~ 70 (79)
T 1faf_A 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-SHALMQELNSLWGTFKTEVYNLR 70 (79)
T ss_dssp HHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC-CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CHHHHHHHHHHHHHHhhHHHHHH
Confidence 57999999999 99999999999999999999854 36789999999999999998876
No 27
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.72 E-value=1.6e-18 Score=124.86 Aligned_cols=64 Identities=23% Similarity=0.432 Sum_probs=58.8
Q ss_pred CCccccc------cCCC-CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHh
Q psy7114 1 MNHFEIL------NCNV-NSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQL 64 (134)
Q Consensus 1 ~~~Y~vL------gv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 64 (134)
+|||+|| |+++ +|+.++||++||++++++|||+.+.+.+.|+.|++||++|+||.+|..||..+
T Consensus 11 ~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 11 STFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 4899999 4665 89999999999999999999995557889999999999999999999999987
No 28
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.71 E-value=1.3e-18 Score=111.72 Aligned_cols=56 Identities=25% Similarity=0.307 Sum_probs=50.9
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHHhccChHHH
Q psy7114 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKER 57 (134)
Q Consensus 2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R 57 (134)
++|+||||+++|+.++||++||++++++|||+. +.+.++|+.|++||++|++...|
T Consensus 17 ~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 579999999999999999999999999999993 34789999999999999987654
No 29
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.70 E-value=1.9e-18 Score=124.21 Aligned_cols=59 Identities=25% Similarity=0.564 Sum_probs=54.2
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CH---HHHHHHHHHHHHHHhccChHHHHHH
Q psy7114 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NS---EHQEMFLKINEAWNILKDEKERKLY 60 (134)
Q Consensus 2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~---~~~~~f~~i~~Ay~~L~d~~~R~~Y 60 (134)
++|+||||+++|+.++||++||++++++|||| .+ .+.+.|+.|++||++|+|+.+|..|
T Consensus 118 d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred chhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 79999999999999999999999999999999 22 2788999999999999999998765
No 30
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.69 E-value=8.5e-18 Score=111.41 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=48.8
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCH----------HHHHHHHHHHHHHHhccChH
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS----------EHQEMFLKINEAWNILKDEK 55 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~~----------~~~~~f~~i~~Ay~~L~d~~ 55 (134)
.+||+|||++. ||.++||+|||++++++||||.+ .+.++|+.|++||++|+|+.
T Consensus 41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 38999999996 99999999999999999999932 35889999999999999975
No 31
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.69 E-value=4.2e-18 Score=110.06 Aligned_cols=52 Identities=23% Similarity=0.486 Sum_probs=47.6
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHhccC
Q psy7114 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS------EHQEMFLKINEAWNILKD 53 (134)
Q Consensus 2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~~------~~~~~f~~i~~Ay~~L~d 53 (134)
++|++|||++.||.++||+|||++++++||||.+ .+.++|+.|++||++|.+
T Consensus 34 ~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999922 378899999999999974
No 32
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.9e-18 Score=106.79 Aligned_cols=55 Identities=31% Similarity=0.390 Sum_probs=49.3
Q ss_pred CccccccCCC-CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHH
Q psy7114 2 NHFEILNCNV-NSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKER 57 (134)
Q Consensus 2 ~~Y~vLgv~~-~as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R 57 (134)
++|+||||++ +|+.++||++||++++++|||+. ++.+.|++|++||++|+++..|
T Consensus 15 ~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~-g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 15 EALQILNLTENTLTKKKLKEVHRKIMLANHPDKG-GSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT-CCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHhhhhhc
Confidence 5799999999 79999999999999999999984 4467999999999999987654
No 33
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=3e-17 Score=104.67 Aligned_cols=57 Identities=28% Similarity=0.703 Sum_probs=52.5
Q ss_pred ccccccCcccccccCCceeEEeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEec
Q psy7114 73 NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITA 133 (134)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~crcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~~ 133 (134)
.+++.+.+++|.|+++...|.++||||+.|.|+.+++..| ..++.|++|||||+|+.
T Consensus 3 ~vydeV~LeDm~~de~~~~y~ypCrCGd~F~IteedLe~g----e~iv~C~sCSL~IkV~y 59 (89)
T 2jr7_A 3 VFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENG----EDVATCPSCSLIIKVIY 59 (89)
T ss_dssp SCSCEEETTTSEEETTTTEEEEECTTSSEEEEEHHHHHHT----CCEEECTTTCCEEEEEC
T ss_pred cceeEEEHHHcEEcCCCCEEEEcCCCCCEEEECHHHHhCC----CEEEECCCCccEEEEEE
Confidence 3567889999999998899999999999999999999988 78999999999999975
No 34
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=99.66 E-value=4.1e-17 Score=103.00 Aligned_cols=56 Identities=36% Similarity=0.775 Sum_probs=52.2
Q ss_pred cccccCcccccccCCceeEEeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEec
Q psy7114 74 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITA 133 (134)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~crcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~~ 133 (134)
+++.+.+++|.|+++.+.|.++||||+.|.|+.+++..| ..++.|++|||||+|+.
T Consensus 4 ~~dev~leDm~~de~~~~y~ypCrCGd~F~it~edL~~g----e~iv~C~sCSL~I~V~~ 59 (83)
T 1yop_A 4 TYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEG----EKVAVCPSCSLMIDVVF 59 (83)
T ss_dssp CSBCCBGGGSEEETTTTEEEEEETTTEEEEEEHHHHHTT----CCEEECSSSCCEEECBC
T ss_pred eeeEEEHHHcEEcCCCCEEEEeCCCCCeEEECHHHHhCC----CEEEECCCCccEEEEEE
Confidence 567889999999998889999999999999999999988 88999999999999975
No 35
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=99.66 E-value=6.8e-17 Score=102.00 Aligned_cols=58 Identities=28% Similarity=0.689 Sum_probs=53.5
Q ss_pred cccccccCcccccccCCceeEEeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEec
Q psy7114 72 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITA 133 (134)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~crcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~~ 133 (134)
+.++..+.+++|.++++...|.|+||||+.|.|+.++|..| ..++.|++|||||+|+.
T Consensus 9 ~~~~dev~LeDm~~de~~~~y~y~CrCGd~F~it~edL~~g----e~iv~C~sCSL~I~V~~ 66 (83)
T 1wge_A 9 AVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENG----EDVATCPSCSLIIKVIY 66 (83)
T ss_dssp CCCSCEEEGGGSCCBTTTTEEEECCSSSSCEEEEHHHHHTT----CCEEECTTTCCEEEEEC
T ss_pred ceeeEEEEHHHceEccCCCEEEEeCCCCCEEEECHHHHhCC----CEEEECCCCceEEEEEe
Confidence 45678899999999998899999999999999999999988 78999999999999975
No 36
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.65 E-value=1e-17 Score=141.68 Aligned_cols=68 Identities=38% Similarity=0.592 Sum_probs=40.7
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
+|||+||||+++||.++||+|||++++++|||+ .+.+.++|+.|++||++|+||.+|+.||.++....
T Consensus 21 ~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~ 91 (780)
T 3apo_A 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 91 (780)
T ss_dssp --CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence 489999999999999999999999999999999 34578899999999999999999999999887554
No 37
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.17 E-value=1.5e-11 Score=95.28 Aligned_cols=62 Identities=31% Similarity=0.590 Sum_probs=53.0
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHhCCCC--C----HHHHHHHHHHHHHHHhccChHHHHHHHH
Q psy7114 1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--N----SEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk--~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
.++|.+||+.+.++.++|+++|+++++++|||+ . ..+.++|+.|.+||++|+||++|..||.
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 378999999999999999999999999999998 2 3478899999999999999999999996
No 38
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.4e-10 Score=70.05 Aligned_cols=50 Identities=22% Similarity=0.211 Sum_probs=43.5
Q ss_pred cccccCCCC---CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccCh
Q psy7114 4 FEILNCNVN---STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDE 54 (134)
Q Consensus 4 Y~vLgv~~~---as~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~ 54 (134)
|.||||+++ ++.++|+++||+|+..+|||+. ++.-....|++|+++|...
T Consensus 7 ~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG-GS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 7 CKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG-GSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHHHH
Confidence 679999999 9999999999999999999983 4456677999999998643
No 39
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.51 E-value=0.047 Score=45.33 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=35.7
Q ss_pred CCccccccCCCCCCH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q psy7114 1 MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNI 50 (134)
Q Consensus 1 ~~~Y~vLgv~~~as~--~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~ 50 (134)
+++|.+||++-++.. .+|+++||++++..+++ .+++..|..|..|
T Consensus 629 ~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-----~~r~~lvd~a~~v 675 (681)
T 2pzi_A 629 ASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-----RHRYTLVDMANKV 675 (681)
T ss_dssp CSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-----HHHHHHHHHHHHH
T ss_pred CCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-----HHHHHHHHHhccc
Confidence 368999999776554 67999999999966665 5678888888865
No 40
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=93.34 E-value=0.025 Score=31.26 Aligned_cols=32 Identities=22% Similarity=0.546 Sum_probs=25.6
Q ss_pred eeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEe
Q psy7114 94 YPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEIT 132 (134)
Q Consensus 94 ~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~ 132 (134)
|.| |||..|.-++-+.-.| +.|+.|-..|...
T Consensus 4 Y~C~rCg~~fs~~el~~lP~-------IrCpyCGyrii~K 36 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPG-------VRCPYCGYKIIFM 36 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSS-------SCCTTTCCSCEEC
T ss_pred EEeeccCCCccHHHHhhCCC-------cccCccCcEEEEE
Confidence 789 9999988877777777 9999998877653
No 41
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=91.01 E-value=0.2 Score=32.00 Aligned_cols=36 Identities=25% Similarity=0.688 Sum_probs=30.8
Q ss_pred EEeeC-CCC--CeEEEecccccCCCCCCceeEeCCCCcceEEE
Q psy7114 92 FTYPC-RCG--AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 131 (134)
Q Consensus 92 ~~~~c-rcg--~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v 131 (134)
..+.| .|+ ....++......| .++|.|++|..+..|
T Consensus 12 l~FTC~~C~tRs~k~iSk~aY~~G----vViv~C~gC~n~HlI 50 (100)
T 2e2z_A 12 IAFTCKKCNTRSSHTMSKQAYEKG----TVLISCPHCKVRHLI 50 (100)
T ss_dssp EEEEETTTTEEEEEEEEHHHHHTS----EEEEECTTTCCEEES
T ss_pred EEEEccCCCCcchhhcCHHHhhCC----EEEEEcCCCccceEe
Confidence 46788 888 5889999999999 999999999988665
No 42
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=86.81 E-value=0.4 Score=34.21 Aligned_cols=28 Identities=29% Similarity=0.745 Sum_probs=23.0
Q ss_pred EeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcc
Q psy7114 93 TYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSL 127 (134)
Q Consensus 93 ~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl 127 (134)
..+| +||+.|.+...+.... ..|+.|..
T Consensus 134 l~~C~~Cgg~fv~~~~~~~~~-------f~Cp~C~~ 162 (192)
T 2avu_E 134 LSSCNCCGGNFITHAHQPVGS-------FACSLCQP 162 (192)
T ss_dssp EEECTTTCCEEEEESSCCSSC-------CCCTTC--
T ss_pred eCcCCCCCCCeeCccCCCCCC-------CcCCCCCC
Confidence 4678 9999999999998777 79999974
No 43
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.59 E-value=1.6 Score=27.55 Aligned_cols=24 Identities=8% Similarity=0.277 Sum_probs=13.4
Q ss_pred EEEecccccCCCCCCcee---EeCCCC
Q psy7114 102 FCIEEQDTEGDGSDDNIL---IACDTC 125 (134)
Q Consensus 102 ~~v~~~~l~~g~~~~~~~---v~C~~C 125 (134)
..|+++|++.|.+.++.+ +.|+.|
T Consensus 8 l~vslee~~~G~~~~i~~~~~~~C~~C 34 (104)
T 2ctt_A 8 MELTFNQAAKGVNKEFTVNIMDTCERC 34 (104)
T ss_dssp CCCCCSSCCSSSCTTCCSSCCEECSSS
T ss_pred EEEEHHHHcCCCEEEEEeeeeeECCCC
Confidence 446666666666555432 555555
No 44
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=63.50 E-value=1.7 Score=25.39 Aligned_cols=31 Identities=29% Similarity=0.693 Sum_probs=22.1
Q ss_pred EEeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEe
Q psy7114 92 FTYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEIT 132 (134)
Q Consensus 92 ~~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~ 132 (134)
..|.| +||..+.+.. .. .+.|+.|...|..+
T Consensus 20 v~Y~C~~Cg~~~~l~~---~~-------~iRC~~CG~RILyK 51 (63)
T 3h0g_L 20 MIYLCADCGARNTIQA---KE-------VIRCRECGHRVMYK 51 (63)
T ss_dssp CCCBCSSSCCBCCCCS---SS-------CCCCSSSCCCCCBC
T ss_pred eEEECCCCCCeeecCC---CC-------ceECCCCCcEEEEE
Confidence 35889 9998877552 22 37999999887654
No 45
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=61.47 E-value=2 Score=25.55 Aligned_cols=32 Identities=19% Similarity=0.698 Sum_probs=22.3
Q ss_pred eEEeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEe
Q psy7114 91 MFTYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEIT 132 (134)
Q Consensus 91 ~~~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~ 132 (134)
.+.|.| .||..|.+...| .+.|+.|-..|..+
T Consensus 26 ~v~Y~C~~CG~~~e~~~~d----------~irCp~CG~RILyK 58 (70)
T 1twf_L 26 TLKYICAECSSKLSLSRTD----------AVRCKDCGHRILLK 58 (70)
T ss_dssp CCCEECSSSCCEECCCTTS----------TTCCSSSCCCCCBC
T ss_pred eEEEECCCCCCcceeCCCC----------CccCCCCCceEeEe
Confidence 356889 999998776221 25899998866543
No 46
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.62 E-value=22 Score=21.16 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHH
Q psy7114 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQ 63 (134)
Q Consensus 19 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 63 (134)
-..+|...+.-||+.. ...+..+.|.+.|..|++.++. .|...
T Consensus 17 ~~e~R~~ik~~~P~~~-~~~eisK~lge~Wk~ls~eeK~-~y~~~ 59 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS-DEADIIKEGMIRFRVLSTEERK-VWANK 59 (81)
T ss_dssp HHHHHHHHHHHCTTCC-SHHHHHHHHHHHHSSSCHHHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCCc-hhHHHHHHHHHHHHcCCHHHHH-HHHHH
Confidence 3456777778899964 3567788999999999966654 45443
No 47
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.43 E-value=29 Score=20.57 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHH
Q psy7114 20 ENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 20 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
...|...+.-||+......+..+.|.+.|..|++.++....+
T Consensus 28 ~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (86)
T 2eqz_A 28 QTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDE 69 (86)
T ss_dssp HHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 344555667799864334567789999999999766544444
No 48
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=54.42 E-value=27 Score=19.68 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHH
Q psy7114 21 NYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 21 ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
..|...+.-||+......+..+.|.+.|..|++.++....+
T Consensus 15 ~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 55 (71)
T 1ckt_A 15 TCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 34555566799864333567789999999999887655444
No 49
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=53.21 E-value=7.1 Score=26.16 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=25.6
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHhCCCC
Q psy7114 4 FEILNCNVNSTLEEIKENYKSLILKYHPDK 33 (134)
Q Consensus 4 Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk 33 (134)
+..|.|....+.++++++-..+..++||+=
T Consensus 35 l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 35 LKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 456677778899999999999999999983
No 50
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=46.51 E-value=39 Score=19.19 Aligned_cols=50 Identities=10% Similarity=0.300 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHH---HHHHHhccC-hH-HHHHHHHHhh
Q psy7114 16 EEIKENYKSLILKYHPDKNSEHQEMFLKI---NEAWNILKD-EK-ERKLYESQLL 65 (134)
Q Consensus 16 ~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i---~~Ay~~L~d-~~-~R~~Yd~~~~ 65 (134)
++..++|.+|.+...=|..-.=++..+.| ..-|.+|.| |. +++.|+.+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~ 57 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLS 57 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHh
Confidence 46778999998888766533334445555 458999997 76 5566887754
No 51
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=45.80 E-value=7.3 Score=24.98 Aligned_cols=25 Identities=24% Similarity=0.646 Sum_probs=16.2
Q ss_pred EEeeC-CCCCeEEEecccccCCCCCCceeEeCCCCc
Q psy7114 92 FTYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCS 126 (134)
Q Consensus 92 ~~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Cs 126 (134)
+.+.| .||-.| .+.+..- ..|+.|.
T Consensus 66 ~p~~C~~CG~~F---~~~~~kP-------srCP~Ck 91 (105)
T 2gmg_A 66 KPAQCRKCGFVF---KAEINIP-------SRCPKCK 91 (105)
T ss_dssp CCCBBTTTCCBC---CCCSSCC-------SSCSSSC
T ss_pred ECcChhhCcCee---cccCCCC-------CCCcCCC
Confidence 45678 788887 3333332 5899885
No 52
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=44.34 E-value=6.7 Score=26.57 Aligned_cols=32 Identities=22% Similarity=0.587 Sum_probs=22.1
Q ss_pred eeEEeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEe
Q psy7114 90 QMFTYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEIT 132 (134)
Q Consensus 90 ~~~~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v~ 132 (134)
..|.+.| .||..|... ..+ ..|+.|-.-+.-.
T Consensus 129 ~~~~y~C~~Cg~~~~~~----~~~-------~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 129 IKWRYVCIGCGRKFSTL----PPG-------GVCPDCGSKVKLI 161 (165)
T ss_dssp CCCCEEESSSCCEESSC----CGG-------GBCTTTCCBEEEC
T ss_pred ccEEEECCCCCCcccCC----CCC-------CcCCCCCCcceeC
Confidence 4578999 799888643 222 4799998776543
No 53
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=42.82 E-value=15 Score=23.50 Aligned_cols=25 Identities=20% Similarity=0.594 Sum_probs=16.5
Q ss_pred EeeC-CCCCeEEEecccccCCCCCCceeE-eCCCCcce
Q psy7114 93 TYPC-RCGAEFCIEEQDTEGDGSDDNILI-ACDTCSLL 128 (134)
Q Consensus 93 ~~~c-rcg~~~~v~~~~l~~g~~~~~~~v-~C~~Csl~ 128 (134)
.+.| .||..|.+.. .. . .||.|-..
T Consensus 73 ~~~C~~CG~~~e~~~--~~---------~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFKPNA--LD---------YGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEECSCC--ST---------TCCCSSSSSC
T ss_pred eEEcCCCCCEEeCCC--CC---------CCcCccccCC
Confidence 4778 7998888732 22 3 79988543
No 54
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=39.86 E-value=34 Score=19.69 Aligned_cols=28 Identities=25% Similarity=0.754 Sum_probs=18.8
Q ss_pred EeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEE
Q psy7114 93 TYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 131 (134)
Q Consensus 93 ~~~crcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i~v 131 (134)
...|-||..+ ..| ...|.|+.|..|.+.
T Consensus 16 ~~~C~C~~~~-------~~g----~~mI~Cd~C~~W~H~ 43 (72)
T 1wee_A 16 KVDCKCGTKD-------DDG----ERMLACDGCGVWHHT 43 (72)
T ss_dssp EECCTTCCCS-------CCS----SCEEECSSSCEEEET
T ss_pred ceEeeCCCcc-------CCC----CcEEECCCCCCccCC
Confidence 3667887642 112 346899999999774
No 55
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=39.77 E-value=48 Score=19.90 Aligned_cols=46 Identities=30% Similarity=0.404 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHhhhhh
Q psy7114 18 IKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68 (134)
Q Consensus 18 Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 68 (134)
||..-.-|.-+-.. .|.+.+....+.+.|. ..+.|+.||..+....
T Consensus 34 vke~v~~l~ekakt--~pqaae~ln~liegyt---~geerklydsalskie 79 (95)
T 1xou_B 34 VKESVNELSEKAKT--DPQAAEKLNKLIEGYT---YGEERKLYDSALSKIE 79 (95)
T ss_dssp HHHHHHHHHHHHHH--CHHHHHHHHHHHHHHH---HSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC--CHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHH
Confidence 44444444433333 4677777777777775 4678999998877543
No 56
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=39.44 E-value=21 Score=23.62 Aligned_cols=14 Identities=29% Similarity=0.904 Sum_probs=10.4
Q ss_pred EeeC-CCCCeEEEec
Q psy7114 93 TYPC-RCGAEFCIEE 106 (134)
Q Consensus 93 ~~~c-rcg~~~~v~~ 106 (134)
...| .||..|.+..
T Consensus 70 ~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 70 VFKCRNCNYEWKLKE 84 (139)
T ss_dssp EEEETTTCCEEEGGG
T ss_pred cEECCCCCCEEeccc
Confidence 3678 7998888755
No 57
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=37.06 E-value=6.9 Score=28.57 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=14.8
Q ss_pred eEEEecccccCCCCCCcee---EeCCCCc
Q psy7114 101 EFCIEEQDTEGDGSDDNIL---IACDTCS 126 (134)
Q Consensus 101 ~~~v~~~~l~~g~~~~~~~---v~C~~Cs 126 (134)
...|+++|++.|.+..+.+ +.|+.|+
T Consensus 17 ~l~vslee~~~G~~k~i~~~r~~~C~~C~ 45 (248)
T 1nlt_A 17 EISASLEELYKGRTAKLALNKQILCKECE 45 (248)
T ss_dssp EEEECTTHHHHCEEEEEEEEEEEECTTTT
T ss_pred EEEecHHHhcCCceEEEEeeEEEeCCCCc
Confidence 4566777777765554432 4565553
No 58
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=36.51 E-value=56 Score=18.16 Aligned_cols=41 Identities=17% Similarity=0.382 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHH
Q psy7114 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 19 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH--NAELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC--HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3456667777899864 3567788999999998666544443
No 59
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=35.59 E-value=35 Score=25.16 Aligned_cols=26 Identities=27% Similarity=0.590 Sum_probs=16.4
Q ss_pred eeC-CCCCeEEEecccccCCCCCCceeEeCCCCc
Q psy7114 94 YPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCS 126 (134)
Q Consensus 94 ~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Cs 126 (134)
.+| +||....-..- .| -....|+.|-
T Consensus 246 ~pC~~CG~~I~~~~~---~g----R~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVV---AG----RGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEE---TT----EEEEECTTTC
T ss_pred CCCCCCCCeEEEEEE---CC----CCeEECCCCC
Confidence 489 89976432221 22 4668999994
No 60
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.25 E-value=82 Score=21.07 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHH
Q psy7114 20 ENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 20 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
...|...+.-||+..-...+..+.|.+.|..|++.++....+.
T Consensus 28 ~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~ 70 (173)
T 2yrq_A 28 QTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 70 (173)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4455666778999523445677899999999998776554443
No 61
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=32.77 E-value=75 Score=18.48 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHhccCh-HHHHHHHHHhhh
Q psy7114 11 VNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDE-KERKLYESQLLS 66 (134)
Q Consensus 11 ~~as~~~Ik~ayr~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~-~~R~~Yd~~~~~ 66 (134)
..+|.++.+++|+.|....+-+- .-...-.-..=..-|.+|.++ .+++.|+.+..+
T Consensus 10 ~~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~ 68 (71)
T 1uzc_A 10 TWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQ 68 (71)
T ss_dssp CCCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHHHH
Confidence 35789999999999999886544 222111111112367788875 455567776543
No 62
>2kzi_A Engineered protein, ZHER2 affibody; protein binding; NMR {Staphylococcus aureus} PDB: 2kzj_A 2otk_E
Probab=32.66 E-value=41 Score=19.71 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=19.1
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCHH
Q psy7114 2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSE 36 (134)
Q Consensus 2 ~~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk~~~ 36 (134)
.||+||.++-- + ++=|..|.+ .++-+|+....
T Consensus 24 AFYeiL~~pnL-t-EeQrngfI~-slkddPs~Sqe 55 (70)
T 2kzi_A 24 AYWEIALLPNL-N-NQQKRAFIR-SLYDDPSQSAN 55 (70)
T ss_dssp SSHHHHHCSSS-C-HHHHHHHHH-HHHHCGGGHHH
T ss_pred HHHHHHcCCCc-c-hhhhhcccc-ccccCccHHHH
Confidence 58999988652 3 334566655 45567765333
No 63
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=32.49 E-value=74 Score=18.34 Aligned_cols=44 Identities=18% Similarity=0.406 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHh
Q psy7114 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQL 64 (134)
Q Consensus 19 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 64 (134)
.+.++...+.-||+.. ..+..+.|.+.|..|++.++...++..-
T Consensus 16 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK~~y~~~A~ 59 (81)
T 1i11_A 16 AKDERRKILQAFPDMH--NSNISKILGSRWKAMTNLEKQPYYEEQA 59 (81)
T ss_dssp HHHHHHHHHTTCSSCC--HHHHHHHHHHHHTTSCSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHhhhhhCCHHHHHHHHHHHH
Confidence 3445666677789864 3566789999999999887665555443
No 64
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.37 E-value=81 Score=18.76 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHH
Q psy7114 20 ENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQ 63 (134)
Q Consensus 20 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 63 (134)
+..|...+.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 20 ~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK~~y~~~A 61 (92)
T 2cs1_A 20 QDHRPQFLIENPKTS--LEDATLQIEELWKTLSEEEKLKYEEKA 61 (92)
T ss_dssp HHHHHHHHHHCCSSC--HHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 445666677899864 356778999999999976665444433
No 65
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=32.35 E-value=81 Score=18.72 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHH
Q psy7114 20 ENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQ 63 (134)
Q Consensus 20 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 63 (134)
..+|...+.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 33 ~~~r~~~k~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~Y~~~A 74 (90)
T 1wgf_A 33 EEKRRQLQEERPELS--ESELTRLLARMWNDLSEKKKAKYKARE 74 (90)
T ss_dssp HHTHHHHHHHCTTSC--HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445666677789853 346678999999999976655444433
No 66
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=30.43 E-value=1.3e+02 Score=21.12 Aligned_cols=41 Identities=20% Similarity=0.422 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHH
Q psy7114 20 ENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 20 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
...|...+.-||+.. ..+..+.+.+.|..|++.++....+.
T Consensus 22 ~~~r~~~k~~~P~~~--~~eisk~lge~Wk~Ls~~EK~~y~~~ 62 (214)
T 3tq6_A 22 KEQLPIFKAQNPDAK--TTELIRRIAQRWRELPDSKKKIYQDA 62 (214)
T ss_dssp HHHHHHHHHHCTTSC--HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC--HHHHHHHHHHHHHccCHHhhhHHHHH
Confidence 345566677899864 46677899999999998766555443
No 67
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=30.28 E-value=1.2e+02 Score=21.62 Aligned_cols=40 Identities=20% Similarity=0.423 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHH
Q psy7114 21 NYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 21 ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
..|...+.-||+.. ..+..+.+.+.|..|++.++....+.
T Consensus 55 e~r~~~k~~~P~~~--~~eisk~lge~Wk~Ls~~EK~~y~~~ 94 (238)
T 3tmm_A 55 EQLPIFKAQNPDAK--TTELIRRIAQRWRELPDSKKKIYQDA 94 (238)
T ss_dssp HHHHHHHHHSTTSC--HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34555667789864 46677889999999998766555443
No 68
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=30.09 E-value=15 Score=24.46 Aligned_cols=23 Identities=30% Similarity=1.001 Sum_probs=13.3
Q ss_pred eC-CCCCeEEEecccccCCCCCCceeEeCCCCcc
Q psy7114 95 PC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSL 127 (134)
Q Consensus 95 ~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl 127 (134)
+| .|+..|+....++ ..|+.|..
T Consensus 29 ~CP~C~seytYeDg~l----------~vCPeC~h 52 (138)
T 2akl_A 29 PCPQCNSEYTYEDGAL----------LVCPECAH 52 (138)
T ss_dssp CCTTTCCCCCEECSSS----------EEETTTTE
T ss_pred CCCCCCCcceEecCCe----------EECCcccc
Confidence 35 6777666654432 45666654
No 69
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=30.01 E-value=83 Score=18.13 Aligned_cols=41 Identities=17% Similarity=0.382 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHH
Q psy7114 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 19 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
...+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 18 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH--NAELSKMLGKSWKALTLAEKRPFVE 58 (83)
T ss_dssp HHHHHHHHHHHCSSSC--HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3456667777899864 3567788999999999666544443
No 70
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=29.76 E-value=91 Score=18.53 Aligned_cols=43 Identities=16% Similarity=0.350 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHH
Q psy7114 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQ 63 (134)
Q Consensus 19 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 63 (134)
.+..|...+.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 19 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK~~Y~~~A 61 (92)
T 2crj_A 19 LNERREQIRTRHPDLP--FPEITKMLGAEWSKLQPAEKQRYLDEA 61 (92)
T ss_dssp HHHHHHHHHHHCTTCC--HHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445666677899864 356678999999999988765554433
No 71
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=29.75 E-value=61 Score=24.46 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=14.5
Q ss_pred ceeEeCCCCcceEEEec
Q psy7114 117 NILIACDTCSLLLEITA 133 (134)
Q Consensus 117 ~~~v~C~~Csl~i~v~~ 133 (134)
.-+-.|..|..++.+..
T Consensus 251 ~r~e~C~~C~~YlK~~~ 267 (309)
T 2fiy_A 251 LRAETCPSCQGYLKQFY 267 (309)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred eEEEEcccccchHhhhh
Confidence 56789999999999864
No 72
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=28.64 E-value=39 Score=20.57 Aligned_cols=21 Identities=5% Similarity=0.094 Sum_probs=17.6
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q psy7114 6 ILNCNVNSTLEEIKENYKSLI 26 (134)
Q Consensus 6 vLgv~~~as~~~Ik~ayr~l~ 26 (134)
++-|++.|+..+||+|-.++.
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 467889999999999988764
No 73
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=28.64 E-value=87 Score=17.93 Aligned_cols=41 Identities=12% Similarity=0.427 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHH
Q psy7114 20 ENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 20 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
+.++...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 15 ~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~eeK~~y~~~ 55 (80)
T 1gt0_D 15 RGQRRKMAQENPKMH--NSEISKRLGAEWKLLSETEKRPFIDE 55 (80)
T ss_dssp HHHHHHHHTTSTTSC--HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 445566667789853 34567899999999997665544443
No 74
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=28.56 E-value=1.1e+02 Score=19.12 Aligned_cols=33 Identities=18% Similarity=0.478 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy7114 16 EEIKENYKSLILKYHPDKNSEHQEMFLKINEAW 48 (134)
Q Consensus 16 ~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay 48 (134)
+++|..||.+.+.|-.+-.....+.=+-|+.|+
T Consensus 12 ~~L~~~YR~ill~YF~~d~~~n~~Id~fVn~aF 44 (102)
T 1r5q_A 12 QQLKSDYRQILLSYFTTDKALKEKIDKFINAVF 44 (102)
T ss_dssp HHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 578999999999997664222233333466665
No 75
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=27.83 E-value=48 Score=19.49 Aligned_cols=20 Identities=15% Similarity=0.028 Sum_probs=17.1
Q ss_pred ccCCCCCCHHHHHHHHHHHH
Q psy7114 7 LNCNVNSTLEEIKENYKSLI 26 (134)
Q Consensus 7 Lgv~~~as~~~Ik~ayr~l~ 26 (134)
=||+++++.++|++.+.+.-
T Consensus 7 ~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp ETCCSSCCHHHHHHHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHhC
Confidence 38999999999999988763
No 76
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=27.72 E-value=97 Score=18.18 Aligned_cols=41 Identities=17% Similarity=0.414 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHH
Q psy7114 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 19 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 29 ~~~~r~~~~~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~y~~ 69 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD--NRAISVILGDRWKKMKNEERRMYTL 69 (87)
T ss_dssp HHHTHHHHHHHCTTSC--HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 3445666677789853 3456778999999999666544433
No 77
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=26.66 E-value=32 Score=20.14 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHH
Q psy7114 21 NYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQ 63 (134)
Q Consensus 21 ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 63 (134)
..|...+.-||+......+..+.|.+.|..|++.++....+..
T Consensus 21 ~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A 63 (83)
T 1aab_A 21 TSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63 (83)
T ss_dssp HHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455556678875321234567899999999987765544433
No 78
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=26.58 E-value=43 Score=20.81 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=16.4
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q psy7114 6 ILNCNVNSTLEEIKENYKSLI 26 (134)
Q Consensus 6 vLgv~~~as~~~Ik~ayr~l~ 26 (134)
++-|++.|+..|||+|-.++.
T Consensus 26 ~F~V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHh
Confidence 456888899999998877653
No 79
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=26.34 E-value=44 Score=20.65 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.2
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q psy7114 6 ILNCNVNSTLEEIKENYKSL 25 (134)
Q Consensus 6 vLgv~~~as~~~Ik~ayr~l 25 (134)
++-|.+.|+..+||+|-.++
T Consensus 31 ~F~V~~~AnK~eIK~AVE~l 50 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKL 50 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46688899999999887765
No 80
>3qwo_C Motavizumab epitope scaffold; immune complex, immune system; HET: EDO; 1.90A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=26.26 E-value=49 Score=18.57 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=17.6
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHhCCCC
Q psy7114 3 HFEILNCNVNSTLEEIKENYKSLILKYHPDK 33 (134)
Q Consensus 3 ~Y~vLgv~~~as~~~Ik~ayr~l~~~~HPDk 33 (134)
||+||.++. -.++=|..|.+ .++-+|++
T Consensus 10 FYeil~lpn--LtEeqRn~yI~-slkdDPs~ 37 (57)
T 3qwo_C 10 SNEIANLPN--LNEEQRSAFLS-SINDDPSQ 37 (57)
T ss_dssp HHHHHHCTT--CCHHHHHHHHH-HHHHCGGG
T ss_pred HHHHHcCCC--cchhhccchHh-hhccCcch
Confidence 688888755 23345666665 44567775
No 81
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=25.90 E-value=95 Score=17.90 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHH
Q psy7114 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 19 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
.+.+|...+.-||+... .+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~~--~eisk~lg~~Wk~ls~~eK~~y~~~ 60 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDN--RGATKILADWWAVLDPKEKQKYTDM 60 (82)
T ss_dssp HHHHHHHHHHHCSSSCT--THHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH--HHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 34556667778898632 3456789999999997665444443
No 82
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.58 E-value=1.2e+02 Score=18.45 Aligned_cols=41 Identities=15% Similarity=0.282 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHH
Q psy7114 20 ENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 20 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
+.+|...+.-||+.. ..+.-+.|.+.|..|++.++....+.
T Consensus 30 ~~~r~~i~~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~Y~~~ 70 (102)
T 2co9_A 30 RDTQAAIKGQNPNAT--FGEVSKIVASMWDGLGEEQKQVYKKK 70 (102)
T ss_dssp HHHHHHHHHHCTTSC--HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 345566667799863 35667789999999997665544443
No 83
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=25.55 E-value=1.3e+02 Score=19.06 Aligned_cols=33 Identities=15% Similarity=0.444 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy7114 16 EEIKENYKSLILKYHPDKNSEHQEMFLKINEAW 48 (134)
Q Consensus 16 ~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay 48 (134)
+++|..||.+.+.|-.+-.....+.=+-|+.|+
T Consensus 19 ~~L~~~YR~ill~YF~~d~~~nq~Id~FVn~aF 51 (111)
T 1v2z_A 19 DELRSIYRTIVLEYFNTDAKVNERIDEFVSKAF 51 (111)
T ss_dssp HHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 578999999999997664333333334466665
No 84
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=24.95 E-value=67 Score=19.37 Aligned_cols=28 Identities=18% Similarity=0.501 Sum_probs=17.2
Q ss_pred EeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceE
Q psy7114 93 TYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLL 129 (134)
Q Consensus 93 ~~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Csl~i 129 (134)
.+.| .||........ . .+..|+.|-..+
T Consensus 27 ~y~Cp~CG~~~v~r~a---t------GiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQG---T------GIWQCSYCDYKF 55 (83)
T ss_dssp CEECSSSCCEEEEEEE---T------TEEEETTTCCEE
T ss_pred cCcCCCCCCcceeccC---C------CeEECCCCCCEe
Confidence 4678 88865443332 2 267888887654
No 85
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=24.72 E-value=48 Score=20.63 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHHHHhCC
Q psy7114 12 NSTLEEIKENYKSLILKYHP 31 (134)
Q Consensus 12 ~as~~~Ik~ayr~l~~~~HP 31 (134)
+-++.+|+.+|+.|++.+|-
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 34677788888888777764
No 86
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.56 E-value=51 Score=20.09 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=16.0
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q psy7114 6 ILNCNVNSTLEEIKENYKSL 25 (134)
Q Consensus 6 vLgv~~~as~~~Ik~ayr~l 25 (134)
++-|.+.|+..+||+|-.++
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~l 46 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEI 46 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHH
Confidence 35578889999999988776
No 87
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=24.55 E-value=34 Score=25.13 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=16.8
Q ss_pred eeC-CCCCeEEEecccccCCCCCCceeEeCCCCc
Q psy7114 94 YPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCS 126 (134)
Q Consensus 94 ~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Cs 126 (134)
.+| +||....-..- .| -+...|+.|-
T Consensus 236 ~pC~~CG~~I~~~~~---~g----R~t~~CP~CQ 262 (266)
T 1ee8_A 236 LPCPACGRPVERRVV---AG----RGTHFCPTCQ 262 (266)
T ss_dssp SBCTTTCCBCEEEES---SS----CEEEECTTTT
T ss_pred CCCCCCCCEeeEEEE---CC----CceEECCCCC
Confidence 578 89976543222 22 4668999995
No 88
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=24.17 E-value=52 Score=20.30 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.0
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q psy7114 6 ILNCNVNSTLEEIKENYKSL 25 (134)
Q Consensus 6 vLgv~~~as~~~Ik~ayr~l 25 (134)
++-|.+.|+..+||+|-.++
T Consensus 25 ~F~V~~~AnK~qIK~aVe~l 44 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETA 44 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 35688899999999887765
No 89
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=24.07 E-value=1.1e+02 Score=17.73 Aligned_cols=40 Identities=10% Similarity=0.359 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHH
Q psy7114 20 ENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 20 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
..++...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 17 ~~~r~~~~~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~y~~ 56 (85)
T 1j46_A 17 RDQRRKMALENPRMR--NSEISKQLGYQWKMLTEAEKWPFFQ 56 (85)
T ss_dssp HHHHHHHHHHSTTSC--HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC--HHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 445666667789863 3456789999999998665544333
No 90
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=23.47 E-value=1.4e+02 Score=18.38 Aligned_cols=42 Identities=14% Similarity=0.370 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHH
Q psy7114 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62 (134)
Q Consensus 19 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 62 (134)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 41 ~~~~r~~~k~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~Y~~~ 82 (106)
T 4euw_A 41 AQAARRKLADQYPHLH--NAELSKTLGKLWRLLNESEKRPFVEE 82 (106)
T ss_dssp HHHHHHHHHHHCTTSC--HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455667777889853 34677899999999996665554443
No 91
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=23.14 E-value=31 Score=25.35 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=16.6
Q ss_pred eeC-CCCCeEEEecccccCCCCCCceeEeCCCCc
Q psy7114 94 YPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCS 126 (134)
Q Consensus 94 ~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Cs 126 (134)
.+| +||....-..- .| -+...|+.|-
T Consensus 243 ~pC~~CG~~I~~~~~---~g----R~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKV---AG----RGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEE---TT----EEEEECTTTS
T ss_pred CCCCCCCCEeeEEEE---CC----CceEECCCCC
Confidence 578 89976443221 22 4668999995
No 92
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=22.98 E-value=32 Score=25.30 Aligned_cols=26 Identities=23% Similarity=0.723 Sum_probs=16.5
Q ss_pred eeC-CCCCeEEEecccccCCCCCCceeEeCCCCc
Q psy7114 94 YPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCS 126 (134)
Q Consensus 94 ~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Cs 126 (134)
.+| +||....-..- .| -+...|+.|-
T Consensus 241 ~pC~~CG~~I~~~~~---~g----R~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKH---AQ----RATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEE---TT----EEEEECTTTC
T ss_pred CCCCCCCCEeeEEEE---CC----CceEECCCCC
Confidence 578 89976443221 22 4668999994
No 93
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.91 E-value=1.3e+02 Score=19.43 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=12.7
Q ss_pred EEeeC-CCCCeEEEecccc
Q psy7114 92 FTYPC-RCGAEFCIEEQDT 109 (134)
Q Consensus 92 ~~~~c-rcg~~~~v~~~~l 109 (134)
.-..| +||..+.+....+
T Consensus 89 ~HliC~~Cg~v~~~~~~~~ 107 (145)
T 3eyy_A 89 IHLVCRDCTNVIEADLSVA 107 (145)
T ss_dssp EEEEESSSSCEEEECGGGG
T ss_pred eEEEECCCCCEEEecCccH
Confidence 33678 9998888865543
No 94
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=22.80 E-value=1.2e+02 Score=17.61 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHH
Q psy7114 20 ENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 20 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
..++...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 15 ~~~r~~~~~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~y~~ 54 (86)
T 2lef_A 15 KEMRANVVAESTLKE--SAAINQILGRRWHALSREEQAKYYE 54 (86)
T ss_dssp HHHHHHHHHHSSCCC--HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 445666667789863 3566789999999999666544433
No 95
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=22.13 E-value=34 Score=25.04 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=16.3
Q ss_pred eeC-CCCCeEEEecccccCCCCCCceeEeCCCCc
Q psy7114 94 YPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCS 126 (134)
Q Consensus 94 ~~c-rcg~~~~v~~~~l~~g~~~~~~~v~C~~Cs 126 (134)
.+| +||+...-..- .| -+...|+.|-
T Consensus 235 ~pC~~CG~~I~~~~~---~g----R~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTL---SS----RPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEE---TT----EEEEECTTTC
T ss_pred CCCCCCCCEeEEEEE---CC----CCeEECCCCC
Confidence 478 89976432221 12 4568999994
No 96
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=21.33 E-value=79 Score=17.23 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=15.3
Q ss_pred ccCCCCCCHHHHHHHHHHH
Q psy7114 7 LNCNVNSTLEEIKENYKSL 25 (134)
Q Consensus 7 Lgv~~~as~~~Ik~ayr~l 25 (134)
=||+++.+.++|+..+.+.
T Consensus 5 ~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 3788889999998888764
No 97
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=20.79 E-value=1.3e+02 Score=17.05 Aligned_cols=41 Identities=20% Similarity=0.450 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHH
Q psy7114 19 KENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61 (134)
Q Consensus 19 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 61 (134)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH--NAEISKRLGKRWKLLKDSDKIPFIQ 54 (79)
T ss_dssp HHHHHHHHHTTSTTSC--HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC--HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455666777789863 3467788999999998666544433
No 98
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=20.78 E-value=1.2e+02 Score=16.94 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHh
Q psy7114 20 ENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQL 64 (134)
Q Consensus 20 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 64 (134)
+.+|...+.-||+.. ..+..+.|.+.|..|++ |..|...-
T Consensus 16 ~~~r~~~~~~~p~~~--~~eisk~lg~~Wk~ls~---K~~y~~~A 55 (73)
T 3nm9_A 16 NSARESIKRENPGIK--VTEVAKRGGELWRAMKD---KSEWEAKA 55 (73)
T ss_dssp HHHHHHHHHHSSSCC--HHHHHHHHHHHHHHCSC---CHHHHHHH
T ss_pred HHHHHHHHHHCCCCC--HHHHHHHHHHHHHcCCc---hHHHHHHH
Confidence 445666777899864 35677899999999997 66665443
No 99
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=20.61 E-value=1.5e+02 Score=17.88 Aligned_cols=43 Identities=14% Similarity=0.246 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccChHHHHHHHHHh
Q psy7114 20 ENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQL 64 (134)
Q Consensus 20 ~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 64 (134)
+..|...+.-||+.. ..+..+.|.+.|..|++.++....+...
T Consensus 23 ~~~r~~ik~~~P~~~--~~eisk~lg~~Wk~ls~eeK~~Y~~~A~ 65 (99)
T 1k99_A 23 MEKRAKYAKLHPEMS--NLDLTKILSKKYKELPEKKKMKYIQDFQ 65 (99)
T ss_dssp HHHHHHHHTTCTTSC--SHHHHHHHHHHHHHSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345566666789863 3456779999999999887765555443
No 100
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=20.06 E-value=1.9e+02 Score=18.81 Aligned_cols=39 Identities=5% Similarity=0.182 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcc
Q psy7114 14 TLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILK 52 (134)
Q Consensus 14 s~~~Ik~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~ 52 (134)
+.+++......+.....|--.+...+.|..+.++|.-+|
T Consensus 173 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 211 (212)
T 3rh2_A 173 SKASLYEGLLRVLMIFKAYSTPDSLANFDRLEQHFRSQS 211 (212)
T ss_dssp CHHHHHHHHHHHHHHHHTTBCHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHhhcc
Confidence 445555555444444444444444455555555555443
Done!