BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7115
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 2 FLKINEAWNILKDEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCG 60
F++I++AW IL +E+ ++ Y+ Q ++ + V L +M F CRCG
Sbjct: 59 FIEIDQAWKILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCG 118
Query: 61 AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
++ + + D +++ LI+CDTCSL++E+
Sbjct: 119 GKYSVSK-----DEAEEVSLISCDTCSLIIEL 145
>pdb|1YWS|A Chain A, Solution Structure Of Ybl071w-A From Saccharomyces
Cerevisiae
Length = 82
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 33 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDT-EGDGSDDNILIACDTCSLLLE 91
M+ Y + + DM + E+QMFTYPC CG F I D EG+ + C +CSL+++
Sbjct: 1 MSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEK-----VAVCPSCSLMID 55
Query: 92 IT 93
+
Sbjct: 56 VV 57
>pdb|1YOP|A Chain A, The Solution Structure Of Kti11p
Length = 83
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 33 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDT-EGDGSDDNILIACDTCSLLLE 91
++ Y + + DM + E+QMFTYPC CG F I D EG+ + C +CSL+++
Sbjct: 2 VSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEK-----VAVCPSCSLMID 56
Query: 92 IT 93
+
Sbjct: 57 VV 58
>pdb|2JR7|A Chain A, Solution Structure Of Human Desr1
Length = 89
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 35 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
+ V + D ++ +S+ + YPC CG F I ++D E +G D + C +CSL++++
Sbjct: 4 FHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLE-NGED---VATCPSCSLIIKV 57
>pdb|1WGE|A Chain A, Solution Structure Of The Mouse Desr1
Length = 83
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 27 SQQQTHMNIYKS-VSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDT 85
S + M ++ V + D ++ +S+ + YPC CG F I ++D E +G D + C +
Sbjct: 2 SSGSSGMAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLE-NGED---VATCPS 57
Query: 86 CSLLLEI 92
CSL++++
Sbjct: 58 CSLIIKV 64
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 31.2 bits (69), Expect = 0.18, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 2 FLKINEAWNILKDEKERKLYE 22
FLKIN A+ +LKDE RK Y+
Sbjct: 64 FLKINRAYEVLKDEDLRKKYD 84
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 2 FLKINEAWNILKDEKERKLYE 22
FLKIN A+ +LKDE RK Y+
Sbjct: 45 FLKINRAYEVLKDEDLRKKYD 65
>pdb|1D5Y|A Chain A, Crystal Structure Of The E. Coli Rob Transcription Factor
In Complex With Dna
pdb|1D5Y|B Chain B, Crystal Structure Of The E. Coli Rob Transcription Factor
In Complex With Dna
pdb|1D5Y|C Chain C, Crystal Structure Of The E. Coli Rob Transcription Factor
In Complex With Dna
pdb|1D5Y|D Chain D, Crystal Structure Of The E. Coli Rob Transcription Factor
In Complex With Dna
Length = 292
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 19/117 (16%)
Query: 13 KDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 72
KD+++ Y + L Q + Y M GE MFTY + G
Sbjct: 188 KDDEQEVFYTTAL---AQDQADGYVLTGHPVMLQGGEYVMFTY-------------EGLG 231
Query: 73 DGSDDNILIACDTCSLLLEITARCGAEFCIEEQDTKGDSSEGNILIACDTCSLLLEI 129
G + IL TC +L +T R G + IE D+ G+ I C LL+ I
Sbjct: 232 TGVQEFILTVYGTCMPMLNLTRRKGQD--IERYYPAEDAKAGDRPINL-RCELLIPI 285
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
Query: 2 FLKINEAWNILKDEKERKLYESQLLS---------QQQTHMNIYKSVSLSDM 44
F + EAW +LKDE+ R Y+ QL Q+QTH Y D+
Sbjct: 70 FKDLAEAWEVLKDEQRRAEYD-QLWQHRNDPGFGRQRQTHEQSYSQQDFDDI 120
>pdb|3I3F|A Chain A, Hypothetical Protein From Giardia Lamblia Gl50803_14299
pdb|3I3F|B Chain B, Hypothetical Protein From Giardia Lamblia Gl50803_14299
pdb|3I3F|C Chain C, Hypothetical Protein From Giardia Lamblia Gl50803_14299
Length = 141
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 12/48 (25%)
Query: 33 MNIYKSVSLSDMEHKGESQMF--------TYPCRCGAEFCIEEQDTEG 72
+NI+ S SLSD E ++++ T PCRC C+ Q EG
Sbjct: 85 LNIFLSTSLSDSEEARFNELYREVFCVPATRPCRC----CVRAQLQEG 128
>pdb|1N5N|A Chain A, Crystal Structure Of Peptide Deformylase From
Pseudomonas Aeruginosa
pdb|1N5N|B Chain B, Crystal Structure Of Peptide Deformylase From
Pseudomonas Aeruginosa
pdb|1S17|A Chain A, Identification Of Novel Potent Bicyclic Peptide
Deformylase Inhibitors
pdb|1S17|B Chain B, Identification Of Novel Potent Bicyclic Peptide
Deformylase Inhibitors
Length = 180
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 5 INEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDM-EHKGESQMFTYP 56
+++A L D+ +YE+ + T +N++K + + D+ E K E ++F P
Sbjct: 36 VDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPRVFINP 88
>pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
Length = 167
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 5 INEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDM-EHKGESQMFTYP 56
+++A L D+ +YE+ + T +N++K + + D+ E K E ++F P
Sbjct: 23 VDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPRVFINP 75
>pdb|1IX1|A Chain A, Crystal Structure Of P.Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
pdb|1IX1|B Chain B, Crystal Structure Of P.Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
Length = 171
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 5 INEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDM-EHKGESQMFTYP 56
+++A L D+ +YE+ + T +N++K + + D+ E K E ++F P
Sbjct: 24 VDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPRVFINP 76
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 18/21 (85%)
Query: 2 FLKINEAWNILKDEKERKLYE 22
F +I++A+ +L DEK+R++Y+
Sbjct: 48 FKQISQAYEVLSDEKKRQIYD 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,665,523
Number of Sequences: 62578
Number of extensions: 128163
Number of successful extensions: 256
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 29
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)