RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7115
(132 letters)
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 74.9 bits (184), Expect = 2e-18
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 2 FLKINEAWNILKDEKERKLYESQLLSQQQTHM-NIYKSVSLSDMEHKGESQMFTYPCRCG 60
F++I++AW IL +E+ ++ Y+ Q ++ + V L +M F CRCG
Sbjct: 59 FIEIDQAWKILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCG 118
Query: 61 AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
++ + + + E + LI+CDTCSL++E+
Sbjct: 119 GKYSVSKDEAE-----EVSLISCDTCSLIIEL 145
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces
cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Length = 83
Score = 55.6 bits (134), Expect = 1e-11
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 33 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
++ Y + + DM + E+QMFTYPC CG F I D + + C +CSL++++
Sbjct: 2 VSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMF----EGEKVAVCPSCSLMIDV 57
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger,
ADP-ribosylating toxin, structural genomics, NPPSFA;
NMR {Mus musculus} SCOP: g.41.17.1
Length = 83
Score = 54.1 bits (130), Expect = 5e-11
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 27 SQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTC 86
S + V + D ++ +S+ + YPC CG F I ++D E + + C +C
Sbjct: 3 SGSSGMAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLE----NGEDVATCPSC 58
Query: 87 SLLLEI 92
SL++++
Sbjct: 59 SLIIKV 64
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR
{Homo sapiens}
Length = 89
Score = 53.0 bits (127), Expect = 1e-10
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 35 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
+ V + D ++ +S+ + YPC CG F I ++D E + + C +CSL++++
Sbjct: 4 FHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLE----NGEDVATCPSCSLIIKV 57
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 36.4 bits (83), Expect = 0.001
Identities = 6/21 (28%), Positives = 17/21 (80%)
Query: 1 MFLKINEAWNILKDEKERKLY 21
+F+++N+AW+ +++ ++ LY
Sbjct: 162 IFMELNDAWSEFENQGQKPLY 182
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 31.6 bits (72), Expect = 0.024
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 2 FLKINEAWNILKDEKERKLYESQLLSQQQTHMNIY 36
F I A+ LKD++ + Y+ L Q N Y
Sbjct: 62 FRVIATAYETLKDDEAKTNYDYYLDHPDQRFYNYY 96
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 32.2 bits (74), Expect = 0.032
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F + EAW +LKDE+ R Y
Sbjct: 70 FKDLAEAWEVLKDEQRRAEY 89
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 30.5 bits (69), Expect = 0.052
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F++I++AW IL +E+ +K Y
Sbjct: 65 FIEIDQAWKILGNEETKKKY 84
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor
protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 29.4 bits (66), Expect = 0.19
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 2 FLKINEAWNILKDEKERKLYE 22
K+N + ++D +
Sbjct: 49 MKKMNTLYKKMEDGVKYAHQP 69
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ
domain, endoplasmic reticulum, oxidor; 1.84A {Mus
musculus}
Length = 210
Score = 29.4 bits (66), Expect = 0.23
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 2 FLKINEAWNILKDEKERKLY 21
FLKIN A+ +LKDE RK Y
Sbjct: 45 FLKINRAYEVLKDEDLRKKY 64
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 28.5 bits (64), Expect = 0.24
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F++I++A+ IL +E++R Y
Sbjct: 59 FIQISKAYEILSNEEKRTNY 78
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 28.0 bits (63), Expect = 0.37
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F ++ EA+ +L DE +RK Y
Sbjct: 50 FSQLAEAYEVLSDEVKRKQY 69
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 27.7 bits (62), Expect = 0.45
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F +I+EA+ IL D ++R++Y
Sbjct: 48 FKEISEAFEILNDPQKREIY 67
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 27.8 bits (62), Expect = 0.50
Identities = 3/21 (14%), Positives = 5/21 (23%)
Query: 2 FLKINEAWNILKDEKERKLYE 22
F + A L +
Sbjct: 69 FKAVVNARTALLKNIKSGPSS 89
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 112
Score = 27.8 bits (62), Expect = 0.57
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F K+ +A IL +E+ R Y
Sbjct: 63 FQKLQKAKEILTNEESRARY 82
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 27.8 bits (62), Expect = 0.58
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F +I++A+ +L R+ Y
Sbjct: 60 FTRISQAYVVLGSATLRRKY 79
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 27.7 bits (62), Expect = 0.61
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F +IN A IL D +R +Y
Sbjct: 60 FKEINNAHAILTDATKRNIY 79
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 28.3 bits (63), Expect = 0.62
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 2 FLKINEAWNILKDEKERKLYE 22
K+N + ++D +
Sbjct: 52 MKKMNTLYKKMEDGVKYAHQP 72
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 27.3 bits (61), Expect = 0.67
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F ++ EA+ +L D+ +R++Y
Sbjct: 46 FKEVAEAYEVLSDKHKREIY 65
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 28.0 bits (62), Expect = 0.69
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 1 MFLKINEAWNILKDEKERKLYESQL 25
IN+AW L+ R Y L
Sbjct: 50 QSATINQAWQTLRHPLMRAEYLLSL 74
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 27.3 bits (61), Expect = 0.71
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F ++EA+ +L D K+R LY
Sbjct: 53 FKLVSEAYEVLSDSKKRSLY 72
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 26.8 bits (60), Expect = 0.76
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F I A+ +L + ++RK Y
Sbjct: 49 FKAIGTAYAVLSNPEKRKQY 68
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 0.79
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 16/63 (25%)
Query: 66 EEQDTEGDGSDDNILIACDTCSLLLEITARCGAEFCIEEQDTKGDSSEGNILIACDTCSL 125
++ G + NI++ C C I E+ ++GD + C C L
Sbjct: 7 IDKRAGRRGPNLNIVLTCPECK---------VYPPKIVERFSEGD-------VVCALCGL 50
Query: 126 LLE 128
+L
Sbjct: 51 VLS 53
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 28.0 bits (62), Expect = 0.88
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 1 MFLKINEAWNILKDEKERKLYESQL 25
+IN+A+ LKD R Y L
Sbjct: 53 QAAQINDAYQTLKDPLRRAEYLLSL 77
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 26.8 bits (60), Expect = 0.93
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F ++ EA+ +L D K+R +Y
Sbjct: 53 FKQVAEAYEVLSDAKKRDIY 72
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 26.4 bits (59), Expect = 1.00
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F +I++A+ +L DEK+R++Y
Sbjct: 48 FKQISQAYEVLSDEKKRQIY 67
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 26.8 bits (59), Expect = 1.0
Identities = 5/28 (17%), Positives = 7/28 (25%)
Query: 2 FLKINEAWNILKDEKERKLYESQLLSQQ 29
++N W K E Q
Sbjct: 52 MQELNSLWGTFKTEVYNLRMNLGGTGFQ 79
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 27.8 bits (61), Expect = 1.1
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 2 FLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKG 48
FLKIN A+ +LKDE RK Y+ + + G
Sbjct: 64 FLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFG 110
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 26.4 bits (59), Expect = 1.1
Identities = 7/20 (35%), Positives = 16/20 (80%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F +I EA+++L D ++R+++
Sbjct: 45 FKEIAEAYDVLSDPRKREIF 64
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 26.5 bits (59), Expect = 1.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F +I EA+ L D RK Y
Sbjct: 49 FREIAEAYETLSDANRRKEY 68
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 26.4 bits (59), Expect = 1.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 2 FLKINEAWNILKDEKERKLY 21
F +I EA+ +L D ++R Y
Sbjct: 46 FKEIKEAYEVLTDSQKRAAY 65
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 26.9 bits (59), Expect = 2.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 1 MFLKINEAWNILKDEKERKLYESQL 25
+N+A++ LKD R Y +L
Sbjct: 57 QSSTLNQAYHTLKDPLRRSQYMLKL 81
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 25.4 bits (56), Expect = 2.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 1 MFLKINEAWNILKDEKERK 19
+ KINEA + L+ K
Sbjct: 53 LATKINEAKDFLEKRGISK 71
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 26.6 bits (59), Expect = 2.8
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 1 MFLKINEAWNILKDEKERKLY 21
F+ I A +L D + RK +
Sbjct: 427 KFIDIAAAKEVLSDPEMRKKF 447
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 25.7 bits (56), Expect = 3.0
Identities = 4/14 (28%), Positives = 12/14 (85%)
Query: 2 FLKINEAWNILKDE 15
F+++N+AW+ +++
Sbjct: 79 FMELNDAWSEFENQ 92
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 4.0
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 3 LKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCR 58
L+I+ L+ + K YE+ LL + L ++++ F C+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLL--------V-----LLNVQNAKAWNAFNLSCK 267
>1wg2_A Zinc finger (AN1-like) family protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, DNA binding protein; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 64
Score = 24.4 bits (53), Expect = 4.6
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 52 MFTYPCRCGAEFC 64
+ + C+CG+ FC
Sbjct: 27 VMGFKCKCGSTFC 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 4.7
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 10/43 (23%)
Query: 5 INEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHK 47
++ N+L K +K+ +L KS+SL ++E
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQ----------KSLSLEEVEGH 1894
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.80.1.1
Length = 85
Score = 24.9 bits (54), Expect = 4.9
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 55 YPCRCGAEFC 64
+ CRCG FC
Sbjct: 41 FECRCGNNFC 50
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Length = 74
Score = 24.5 bits (53), Expect = 5.3
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 52 MFTYPCRCGAEFC 64
+ + CRCG FC
Sbjct: 37 LTGFDCRCGNLFC 49
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc
binding, structural genomics, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 74
Score = 24.5 bits (53), Expect = 5.7
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 52 MFTYPCRCGAEFC 64
+ + CRCG+ FC
Sbjct: 37 VTGFKCRCGSTFC 49
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc
binding, structural genomics, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 64
Score = 24.4 bits (53), Expect = 5.8
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 52 MFTYPCRCGAEFC 64
+ + CRCG FC
Sbjct: 27 LTGFMCRCGTTFC 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.395
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,792,154
Number of extensions: 88716
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 77
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)