RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7115
         (132 letters)



>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3,
          DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 82

 Score = 55.5 bits (134), Expect = 5e-12
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 33 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
          M+ Y  + + DM  + E+QMFTYPC CG  F I   D      +   +  C +CSL++++
Sbjct: 1  MSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMF----EGEKVAVCPSCSLMIDV 56


>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 70

 Score = 52.8 bits (127), Expect = 4e-11
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 35 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
           +  V + D ++  +S+ + YPC CG  F I ++D E    +   +  C +CSL++++
Sbjct: 4  FHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLE----NGEDVATCPSCSLIIKV 57


>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
          9913]}
          Length = 98

 Score = 32.2 bits (73), Expect = 0.005
 Identities = 6/21 (28%), Positives = 17/21 (80%)

Query: 1  MFLKINEAWNILKDEKERKLY 21
          +F+++N+AW+  +++ ++ LY
Sbjct: 78 IFMELNDAWSEFENQGQKPLY 98


>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
          (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 94

 Score = 32.0 bits (72), Expect = 0.006
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 1  MFLKINEAWNILKDEKERKLYESQ 24
           F++I++AW IL +E+ +K Y+ Q
Sbjct: 64 KFIEIDQAWKILGNEETKKKYDLQ 87


>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
          {Murine polyomavirus [TaxId: 10634]}
          Length = 79

 Score = 30.0 bits (67), Expect = 0.020
 Identities = 4/21 (19%), Positives = 7/21 (33%)

Query: 1  MFLKINEAWNILKDEKERKLY 21
          +  ++N  W   K E      
Sbjct: 51 LMQELNSLWGTFKTEVYNLRM 71


>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
          {Escherichia coli [TaxId: 562]}
          Length = 76

 Score = 28.5 bits (63), Expect = 0.087
 Identities = 8/25 (32%), Positives = 10/25 (40%)

Query: 1  MFLKINEAWNILKDEKERKLYESQL 25
              IN+AW  L+    R  Y   L
Sbjct: 50 QSATINQAWQTLRHPLMRAEYLLSL 74


>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
          {Escherichia coli [TaxId: 562]}
          Length = 75

 Score = 25.4 bits (55), Expect = 1.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 1  MFLKINEAWNILKDEKERKLYE 22
           F +I EA+ +L D ++R  Y+
Sbjct: 45 KFKEIKEAYEVLTDSQKRAAYD 66


>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
          protein At2g36320 {Thale cress (Arabidopsis thaliana)
          [TaxId: 3702]}
          Length = 64

 Score = 24.0 bits (52), Expect = 2.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 52 MFTYPCRCGAEFC 64
          +  + CRCG  FC
Sbjct: 27 LTGFMCRCGTTFC 39


>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 74

 Score = 23.7 bits (51), Expect = 3.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 52 MFTYPCRCGAEFC 64
          +  + CRCG  FC
Sbjct: 37 LTGFDCRCGNLFC 49


>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog)
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 85

 Score = 23.7 bits (51), Expect = 5.0
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 55 YPCRCGAEFC 64
          + CRCG  FC
Sbjct: 41 FECRCGNNFC 50


>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
          protein At1g12440 {Thale cress (Arabidopsis thaliana)
          [TaxId: 3702]}
          Length = 74

 Score = 22.9 bits (49), Expect = 8.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 52 MFTYPCRCGAEFC 64
          +  + CRCG+ FC
Sbjct: 37 VTGFKCRCGSTFC 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 451,201
Number of extensions: 18248
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 31
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)