BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7121
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Q107|MED6_ANOGA Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles
gambiae GN=MED6 PE=3 SV=3
Length = 267
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 48/65 (73%), Positives = 56/65 (86%)
Query: 13 EPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISS 72
E + NMTG+EYI LHVQ+PILYVIRKQHRHS + TP+ADYYIIAG VYQAPDLASV +S
Sbjct: 64 ELLNNMTGVEYIPLHVQDPILYVIRKQHRHSPTEATPMADYYIIAGTVYQAPDLASVFNS 123
Query: 73 RLVGT 77
R++ T
Sbjct: 124 RILST 128
>sp|Q8MSX2|MED6_DROME Mediator of RNA polymerase II transcription subunit 6 OS=Drosophila
melanogaster GN=MED6 PE=1 SV=1
Length = 249
Score = 101 bits (252), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/65 (70%), Positives = 55/65 (84%)
Query: 13 EPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISS 72
E + NM GLEYI+LHV EPILYVIRKQHRH+ + TPIADYYII G VY+APDLA+VI+S
Sbjct: 58 EHLHNMIGLEYILLHVAEPILYVIRKQHRHNPSEATPIADYYIIGGTVYKAPDLANVINS 117
Query: 73 RLVGT 77
R++ T
Sbjct: 118 RILNT 122
>sp|Q6IQ63|MED6_DANRE Mediator of RNA polymerase II transcription subunit 6 OS=Danio
rerio GN=med6 PE=2 SV=1
Length = 254
Score = 91.3 bits (225), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/59 (71%), Positives = 48/59 (81%)
Query: 15 ILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSR 73
+ + G+EYI+LH QEPILY+IRKQ R S Q P+ADYYIIAGVVYQAPDL SVISSR
Sbjct: 60 LTQLVGVEYILLHTQEPILYIIRKQQRQSPTQVIPLADYYIIAGVVYQAPDLGSVISSR 118
>sp|Q921D4|MED6_MOUSE Mediator of RNA polymerase II transcription subunit 6 OS=Mus
musculus GN=Med6 PE=2 SV=2
Length = 246
Score = 90.5 bits (223), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 13 EPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISS 72
E + M G+EYI+LH QEPIL++IRKQ R S Q P+ADYYIIAGV+YQAPDL SVI+S
Sbjct: 58 EHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINS 117
Query: 73 RLV 75
R++
Sbjct: 118 RVL 120
>sp|O75586|MED6_HUMAN Mediator of RNA polymerase II transcription subunit 6 OS=Homo
sapiens GN=MED6 PE=1 SV=2
Length = 246
Score = 90.5 bits (223), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 13 EPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISS 72
E + M G+EYI+LH QEPIL++IRKQ R S Q P+ADYYIIAGV+YQAPDL SVI+S
Sbjct: 58 EHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINS 117
Query: 73 RLV 75
R++
Sbjct: 118 RVL 120
>sp|Q5RD94|MED6_PONAB Mediator of RNA polymerase II transcription subunit 6 OS=Pongo
abelii GN=MED6 PE=2 SV=1
Length = 246
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 49/58 (84%)
Query: 18 MTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSRLV 75
M G+EYI+LH QEPIL++IRKQ R S Q P+ADYYIIAGV+YQAPDL SVI+SR++
Sbjct: 63 MVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVL 120
>sp|Q3SZY9|MED6_BOVIN Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus
GN=MED6 PE=2 SV=1
Length = 246
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 49/58 (84%)
Query: 18 MTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSRLV 75
M G+EYI+LH QEPIL++IRKQ R S Q P+ADYYIIAGV+YQAPDL SVI+SR++
Sbjct: 63 MVGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVL 120
>sp|Q6C3T0|MED6_YARLI Mediator of RNA polymerase II transcription subunit 6 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MED6 PE=3 SV=1
Length = 227
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 52/69 (75%)
Query: 10 HVQEPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASV 69
H ++ + MTG+E+++ HV+EP L+VI+KQ+R + +QTTPI+ Y++I VY AP +A++
Sbjct: 63 HFEQELQKMTGIEFVITHVREPDLWVIKKQNRLNPQQTTPISTYFVINENVYMAPTVAAI 122
Query: 70 ISSRLVGTG 78
+ SR++ T
Sbjct: 123 MQSRVLSTS 131
>sp|Q4PHA6|MED6_USTMA Mediator of RNA polymerase II transcription subunit 6 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=MED6 PE=3 SV=1
Length = 254
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 48/66 (72%)
Query: 12 QEPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVIS 71
++ + TGLE++++H +EP +V++K+ R S +TTP+A YY+I +YQAPDL S+++
Sbjct: 101 EQELKRFTGLEFVLVHSREPTCFVVQKRWRTSPTETTPLAAYYVINDSIYQAPDLYSILA 160
Query: 72 SRLVGT 77
+RL T
Sbjct: 161 TRLQST 166
>sp|Q5A2Z1|MED6_CANAL Mediator of RNA polymerase II transcription subunit 6 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MED6 PE=3
SV=1
Length = 263
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 10 HVQEPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASV 69
+ Q + MTG+E+++ + +EP ++IRKQ R + T + DYYII VYQAP + V
Sbjct: 64 YFQSRLSEMTGIEFVIAYTKEPDFWIIRKQKRQDPQNTVTLQDYYIIGANVYQAPRIYDV 123
Query: 70 ISSRLVGT 77
+SSRL+ +
Sbjct: 124 LSSRLLAS 131
>sp|Q60WM1|MED6_CAEBR Mediator of RNA polymerase II transcription subunit 6
OS=Caenorhabditis briggsae GN=mdt-6 PE=3 SV=1
Length = 246
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 11 VQEPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVI 70
V E + NM G++Y++ + Q P LY++ KQ R++ +PIA YY+I G V+QAPD+ +++
Sbjct: 67 VDECLRNMQGIQYVLWYSQPP-LYIVCKQRRNNATNVSPIAYYYVINGSVHQAPDMHTLV 125
Query: 71 SSRLVG 76
SRL+G
Sbjct: 126 QSRLLG 131
>sp|Q6CTT6|MED6_KLULA Mediator of RNA polymerase II transcription subunit 6
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MED6 PE=3
SV=1
Length = 268
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 11 VQEPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVI 70
+++ ++ M G+EYI++ V+EP L++IRKQ R +TT + DYY+I VYQ+P + +I
Sbjct: 97 LEKELMKMKGIEYILVLVREPDLWIIRKQQRDGPTKTTTLRDYYVIGSAVYQSPTVYKII 156
Query: 71 SSRLVGTG 78
+RL+ T
Sbjct: 157 QNRLLSTN 164
>sp|F4IXJ7|MED6_ARATH Mediator of RNA polymerase II transcription subunit 6
OS=Arabidopsis thaliana GN=MED6 PE=1 SV=1
Length = 298
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 18 MTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSRLVGT 77
MTGLEY++ EP L+V RKQ R E+ TP+ YYI+ G +YQAP L SV ++R+ T
Sbjct: 89 MTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRT 148
>sp|Q9N337|MED6_CAEEL Mediator of RNA polymerase II transcription subunit 6
OS=Caenorhabditis elegans GN=mdt-6 PE=1 SV=1
Length = 250
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 11 VQEPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVI 70
V+E + M G++Y++ + Q P L++I KQ R+++ +PIA YY+I G V+QAPD+ S++
Sbjct: 67 VEECLRTMPGIQYVLWYSQPP-LFIICKQRRNNVTNVSPIAYYYVINGSVHQAPDMYSLV 125
Query: 71 SSRLVG 76
SRL+G
Sbjct: 126 QSRLLG 131
>sp|Q75EY3|MED6_ASHGO Mediator of RNA polymerase II transcription subunit 6 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=MED6 PE=3 SV=1
Length = 235
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 11 VQEPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVI 70
+++ + + G+EY++ HV+EP +V+RKQ R + ++ T + DYYII VYQAP SV+
Sbjct: 86 LEQELAKLKGIEYVLAHVREPDFWVVRKQRR-AGDRVTALNDYYIIGANVYQAPTAYSVV 144
Query: 71 SSRLVGTG 78
+RL+ TG
Sbjct: 145 QNRLLSTG 152
>sp|Q6FW12|MED6_CANGA Mediator of RNA polymerase II transcription subunit 6 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MED6 PE=3 SV=1
Length = 302
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 4 LEYIVLH--VQEPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVY 61
LE V+H ++ ++ + G+EY++ +V+EP +VI+KQ R S P+ YYI+ VY
Sbjct: 94 LEKYVVHAFLERELMKVRGIEYVLANVREPDFWVIKKQRRTSPTAIEPLQTYYIVGANVY 153
Query: 62 QAPDLASVISSRLVGTGS 79
Q+P + ++ SRL+ S
Sbjct: 154 QSPTVFKIVQSRLLACSS 171
>sp|P38782|MED6_YEAST Mediator of RNA polymerase II transcription subunit 6
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MED6 PE=1 SV=1
Length = 295
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 9 LHVQEPILNMTGLEYIVLHVQEPILYVIRKQHRHSME--------QTTPIADYYIIAGVV 60
+ ++E ++ + G EY++ V+EP +VIRKQ R + + P+ DYYII +
Sbjct: 101 MQLEEELMKLDGTEYVLSSVREPDFWVIRKQRRTNNSGVGSAKGPEIIPLQDYYIIGANI 160
Query: 61 YQAPDLASVISSRLVGT 77
YQ+P + ++ SRL+ T
Sbjct: 161 YQSPTIFKIVQSRLMST 177
>sp|Q6BIH7|MED6_DEBHA Mediator of RNA polymerase II transcription subunit 6
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=MED6 PE=3 SV=2
Length = 257
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 10 HVQEPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASV 69
++Q ++ MTG+E+I+ +EP ++IRKQ R S +Q DYYII +YQAP + +
Sbjct: 64 YLQSKLVEMTGIEFIIAASREPDFWIIRKQTRLSPKQVNIEQDYYIIGANIYQAPKVYDI 123
>sp|Q9US45|MED6_SCHPO Mediator of RNA polymerase II transcription subunit 6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=med6 PE=1 SV=1
Length = 216
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 41/59 (69%)
Query: 18 MTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSRLVG 76
+TG++++++H + P L+VI+KQ+R + + P+ Y++ +Y AP+ +++++R++
Sbjct: 73 LTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNAYTLLATRMLN 131
>sp|A3LQ10|MED6_PICST Mediator of RNA polymerase II transcription subunit 6
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=MED6 PE=3 SV=2
Length = 263
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 12 QEPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAP 64
QE + MTG+ +++ + +EP ++IRKQ + + + DYYII VYQAP
Sbjct: 68 QEKLREMTGVVFVIAYNREPDFWIIRKQLQLDPQNAVTLQDYYIIGANVYQAP 120
>sp|Q54PN3|MED6_DICDI Putative mediator of RNA polymerase II transcription subunit 6
OS=Dictyostelium discoideum GN=med6 PE=3 SV=1
Length = 267
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 17 NMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSRL 74
NM GLEY ++ EP ++I KQ R S YY+I G +YQAP+L V SR+
Sbjct: 118 NMDGLEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRV 175
>sp|P0CO74|MED6_CRYNJ Mediator of RNA polymerase II transcription subunit 6
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=MED6 PE=3 SV=1
Length = 357
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 10 HVQEPI-LN--MTGLEYIVLHVQEPILYVI-RKQHRHSMEQTTPIADYYIIAGVVYQAPD 65
H +E + LN M+G EY+V H Q P L+VI R++ S ++ ++I+ +YQ P
Sbjct: 69 HAEEKVELNAFMSGFEYVVAHSQPPDLFVIHRREVESSGKRDRVTGAWFILHEKIYQCPT 128
Query: 66 LASVISSRL 74
L V+S+RL
Sbjct: 129 LFDVMSTRL 137
>sp|P0CO75|MED6_CRYNB Mediator of RNA polymerase II transcription subunit 6
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=MED6 PE=3 SV=1
Length = 357
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 10 HVQEPI-LN--MTGLEYIVLHVQEPILYVI-RKQHRHSMEQTTPIADYYIIAGVVYQAPD 65
H +E + LN M+G EY+V H Q P L+VI R++ S ++ ++I+ +YQ P
Sbjct: 69 HAEEKVELNAFMSGFEYVVAHSQPPDLFVIHRREVESSGKRDRVTGAWFILHEKIYQCPT 128
Query: 66 LASVISSRL 74
L V+S+RL
Sbjct: 129 LFDVMSTRL 137
>sp|Q2U9E7|MED6_ASPOR Mediator of RNA polymerase II transcription subunit 6
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=med6 PE=3 SV=1
Length = 328
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 1 MTGLEYIVLHVQEPILNMTGLEYIVLHVQEPI-LYVIRKQHRHSM----EQTTPIADYYI 55
M GLE++V + +P+ E H EP ++VIRKQ R ++ ++ Y++
Sbjct: 78 MQGLEFVVAY--DPLQAAAQTETSFAH--EPSNIWVIRKQTRRKRAGLEDEVVVLSTYFV 133
Query: 56 IAGVVYQAPDLASVISSRLV 75
+ +Y AP +ASV+ +RL+
Sbjct: 134 VGDCIYMAPSVASVVGNRLL 153
>sp|Q5AYT1|MED6_EMENI Mediator of RNA polymerase II transcription subunit 6 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=med6 PE=3 SV=2
Length = 325
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 1 MTGLEYIVLHVQEPILNMTGLEYIVLHVQEPI-LYVIRKQHRHSM----EQTTPIADYYI 55
M GLE++V + +P+ G +H EP ++VIRKQ R ++ +A +++
Sbjct: 79 MQGLEFMVAY--DPLQAAAGANAQFVH--EPSNVWVIRKQTRRKRSGFEDEVVVLATFFV 134
Query: 56 IAGVVYQAPDLASVISSRLV 75
+ +Y AP ASVI +R++
Sbjct: 135 VGDCIYMAPSAASVIGNRIL 154
>sp|A2R4I0|MED6_ASPNC Mediator of RNA polymerase II transcription subunit 6
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=med6 PE=3 SV=2
Length = 323
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 1 MTGLEYIVLHVQEPILNMTGLEYIVLHVQEPI-LYVIRKQHRHSM----EQTTPIADYYI 55
M GLE++V + +PI + H EP ++VIRKQ+R ++ ++ Y+I
Sbjct: 78 MQGLEFVVSY--DPIQAAAQPDGRFAH--EPSNIWVIRKQNRRKRTGLDDEVAVLSTYFI 133
Query: 56 IAGVVYQAPDLASVISSRLV 75
+ +Y AP +ASV+ +R++
Sbjct: 134 VGDCIYMAPSVASVVGNRIL 153
>sp|Q9HED8|MED6_NEUCR Mediator of RNA polymerase II transcription subunit 6 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=med-6 PE=3 SV=1
Length = 360
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 24/79 (30%)
Query: 18 MTGLEYIVLHVQEPI---------LYVIRKQHRHSMEQTTPI-------------ADYYI 55
M+GLE+IV QEP ++VI KQ R T P + Y++
Sbjct: 79 MSGLEFIV--AQEPAETGPGMGTGVWVINKQTRRKRPPTNPARPEDGPPDEIIVHSVYFV 136
Query: 56 IAGVVYQAPDLASVISSRL 74
+ +Y AP LA V+SSR+
Sbjct: 137 VGENIYMAPTLADVLSSRI 155
>sp|Q4WDH9|MED6_ASPFU Mediator of RNA polymerase II transcription subunit 6
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=med6 PE=3 SV=1
Length = 324
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 1 MTGLEYIVLHVQEPILNMTGLEYIVLHVQEPI-LYVIRKQHRHSM----EQTTPIADYYI 55
M GLE++V + +P+ + H EP ++VIRKQ R ++ +A +++
Sbjct: 78 MQGLEFVVAY--DPLQAAAQTDTQFAH--EPSNVWVIRKQMRRKRAGQEDEVVVLATFFV 133
Query: 56 IAGVVYQAPDLASVISSRLV 75
+ +Y AP +ASV+ +R++
Sbjct: 134 VGDCIYMAPSVASVVGNRIL 153
>sp|Q1E3Z7|MED6_COCIM Mediator of RNA polymerase II transcription subunit 6
OS=Coccidioides immitis (strain RS) GN=MED6 PE=3 SV=2
Length = 353
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 1 MTGLEYIVLHVQEPILNMTGLEYIVLHVQEPI-----LYVIRKQHRH------SMEQTTP 49
M GLE+IV H +P+L + E ++VIRKQ R +
Sbjct: 78 MQGLEFIVAH--DPLLEAAAANAAAVARGEQPKEASNVWVIRKQMRRRSAAMGGQDDVQV 135
Query: 50 IADYYIIAGVVYQAPDLASVISSRLVGT 77
+A Y+++ V+ AP + SV+ R++ T
Sbjct: 136 LATYFVVGDSVFMAPSVWSVVGRRMLST 163
>sp|Q0CH76|MED6_ASPTN Mediator of RNA polymerase II transcription subunit 6
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=med6 PE=3 SV=2
Length = 324
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 18/76 (23%)
Query: 18 MTGLEYIVLH-------------VQEPI-LYVIRKQHRHSM----EQTTPIADYYIIAGV 59
M GLE++V + EP ++VI KQ R ++ ++ ++++
Sbjct: 78 MQGLEFVVSYDPLQAAAQSNGQFAHEPSNIWVIHKQTRRKRPGLEDEVEVLSTFFVVGDC 137
Query: 60 VYQAPDLASVISSRLV 75
+Y AP +ASV+ +R++
Sbjct: 138 IYMAPSVASVVGNRIL 153
>sp|Q9FGN3|FB290_ARATH F-box protein At5g51380 OS=Arabidopsis thaliana GN=At5g51380 PE=2
SV=1
Length = 479
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 15 ILNMTGLEYIVLHVQE-PILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSR 73
IL +GLE ++LH +E + V+ ++ E + ++ + + + PD S +SS
Sbjct: 403 ILTTSGLESVILHWEELESMRVVSCKNIKDSEISAALSSLFSLLKELTWRPDTRSHLSSS 462
Query: 74 LVGTG 78
L GTG
Sbjct: 463 LEGTG 467
>sp|A0AJM3|PURL_LISW6 Phosphoribosylformylglycinamidine synthase 2 OS=Listeria welshimeri
serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
GN=purL PE=3 SV=1
Length = 739
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 2 TGLEYIVLHVQEPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVV 60
GLE I+ V + LNMT E ++ QE +L ++K H +++ + D Y + VV
Sbjct: 293 AGLELIMDDVPQRELNMTPYEMLLSESQERMLLCVKKGH---VDEIQALFDRYGLEAVV 348
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,882,372
Number of Sequences: 539616
Number of extensions: 937162
Number of successful extensions: 1961
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1911
Number of HSP's gapped (non-prelim): 54
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)