Query psy7121
Match_columns 79
No_of_seqs 105 out of 159
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 18:41:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h61_A Mediator of RNA polymer 100.0 2.4E-34 8.3E-39 204.9 6.4 70 9-78 59-128 (175)
2 4gwp_G Mediator of RNA polymer 100.0 4.1E-34 1.4E-38 216.5 -0.7 70 9-78 101-178 (295)
3 1tp6_A Hypothetical protein PA 44.3 23 0.0008 22.0 3.3 41 2-42 50-94 (128)
4 3o71_B Peptide of deleted in c 33.5 15 0.00052 18.8 0.9 16 28-43 9-24 (27)
5 2dla_A 397AA long hypothetical 24.9 19 0.00065 26.3 0.5 16 47-62 149-164 (222)
6 3mcb_A Nascent polypeptide-ass 22.5 49 0.0017 18.9 1.9 27 14-40 6-32 (54)
7 2z30_B TK-subtilisin; thermoco 22.3 32 0.0011 19.4 1.1 14 12-25 44-57 (65)
8 3mce_A Nascent polypeptide-ass 22.0 51 0.0017 19.4 1.9 27 14-40 12-38 (61)
9 3mtw_A L-arginine carboxypepti 21.9 41 0.0014 21.6 1.6 12 53-64 392-403 (403)
10 1vqt_A Orotidine 5'-phosphate 20.2 22 0.00076 24.5 0.1 22 50-71 185-206 (213)
11 3cnq_P Subtilisin BPN'; unclea 20.1 37 0.0013 19.3 1.0 16 10-25 53-68 (80)
No 1
>4h61_A Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 2.70A {Schizosaccharomyces pombe} PDB: 4h63_F
Probab=100.00 E-value=2.4e-34 Score=204.94 Aligned_cols=70 Identities=23% Similarity=0.612 Sum_probs=67.2
Q ss_pred hhhhhhcccCcceeEEEeecCCCceEEEEEeeecCCCCceeeeEEEEecCeEeeCCChHHHHhhhhccCC
Q psy7121 9 LHVQEPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSRLVGTG 78 (79)
Q Consensus 9 ~~~~~~L~~m~GiEy~l~~~~eP~lfVIrKq~R~sp~~~~~la~YYIi~g~VYQAP~l~~vl~sRl~s~~ 78 (79)
..++++|++|+|+||+|+|++||+|||||||+|++|++++|+|+||||||+||||||+++|++|||++++
T Consensus 59 ~~~e~~L~~m~GiEy~l~~~~~p~lfvI~Kq~R~~~~~~~~la~YyIi~g~IYqAP~l~~vl~sRl~s~~ 128 (175)
T 4h61_A 59 GDLNSQLKRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNAYTLLATRMLNAT 128 (175)
T ss_dssp CCHHHHHHTCCEEEEEEEEEETTTEEEEEEEEECSSSCEEEEEEEEEETTEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEeecCCCceEEEEEEEEcCCCcceEEEEEEEECCEEccCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999999999874
No 2
>4gwp_G Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae S288C} PDB: 3rj1_G 4gwq_G
Probab=99.97 E-value=4.1e-34 Score=216.55 Aligned_cols=70 Identities=37% Similarity=0.773 Sum_probs=66.2
Q ss_pred hhhhhhcccCcceeEEEeecCCCceEEEEEeeecCCC--------CceeeeEEEEecCeEeeCCChHHHHhhhhccCC
Q psy7121 9 LHVQEPILNMTGLEYIVLHVQEPILYVIRKQHRHSME--------QTTPIADYYIIAGVVYQAPDLASVISSRLVGTG 78 (79)
Q Consensus 9 ~~~~~~L~~m~GiEy~l~~~~eP~lfVIrKq~R~sp~--------~~~~la~YYIi~g~VYQAP~l~~vl~sRl~s~~ 78 (79)
..++++|++|+||||+|+|++||+|||||||+|+||+ +++|||+||||||+||||||+++||+|||++++
T Consensus 101 ~~~e~~L~~m~GiEyvl~~~~eP~lwVIrKQ~R~s~~~~~~~~~~ev~pLa~YYIig~~IYqAPsl~~Vl~sRlls~~ 178 (295)
T 4gwp_G 101 MQLEEELMKLDGTEYVLSSVREPDFWVIRKQRRTNNSGVGSAKGPEIIPLQDYYIIGANIYQSPTIFKIVQSRLMSTS 178 (295)
T ss_dssp HHHHHHHHHHSCEEETTEEECSSEEEEEEETTEEEEEEEEECCCTTCCCEEEEEEEEETTEEECCCTTHHHHHHHHHH
T ss_pred hhhHHHHhhCCCeEEEEeecCCCceEEEEeeeccCCcccccccCcceeEeEEEEEECCEEecCCCHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999874 899999999999999999999999999999874
No 3
>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12
Probab=44.34 E-value=23 Score=21.99 Aligned_cols=41 Identities=5% Similarity=-0.242 Sum_probs=33.3
Q ss_pred cchhhhhhhhhhhcccCcceeEEEeecCC----CceEEEEEeeec
Q psy7121 2 TGLEYIVLHVQEPILNMTGLEYIVLHVQE----PILYVIRKQHRH 42 (79)
Q Consensus 2 ~~~e~~~~~~~~~L~~m~GiEy~l~~~~e----P~lfVIrKq~R~ 42 (79)
.|.+.+...+...+...+|+.|.+...+. ++.++++=+..+
T Consensus 50 ~g~~~~~~~~~~~~g~~pgl~i~i~~l~~~~~~~d~~vv~y~~~~ 94 (128)
T 1tp6_A 50 LDKTALGELFRSKGGTRPGLRIEIDGESLLASGVDGATLAYREIQ 94 (128)
T ss_dssp EEHHHHHHHHHHHTTCSTTCEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCHHHHHHHHHHhhCCCCCeEEEEEEEEEEeecCCEEEEEEEEEe
Confidence 37788889999999999999999988643 788888865444
No 4
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=33.48 E-value=15 Score=18.79 Aligned_cols=16 Identities=13% Similarity=0.355 Sum_probs=11.7
Q ss_pred cCCCceEEEEEeeecC
Q psy7121 28 VQEPILYVIRKQHRHS 43 (79)
Q Consensus 28 ~~eP~lfVIrKq~R~s 43 (79)
..+|+|||=+-|.-.+
T Consensus 9 lkppdlwihhe~~elk 24 (27)
T 3o71_B 9 LRPPDLWIHHEEMEMK 24 (27)
T ss_pred CCCcceeeehhhhccc
Confidence 4689999987765444
No 5
>2dla_A 397AA long hypothetical protein; helix bundle, twisted beta-sheet, replication; 2.90A {Pyrococcus horikoshii}
Probab=24.94 E-value=19 Score=26.34 Aligned_cols=16 Identities=44% Similarity=0.829 Sum_probs=13.9
Q ss_pred ceeeeEEEEecCeEee
Q psy7121 47 TTPIADYYIIAGVVYQ 62 (79)
Q Consensus 47 ~~~la~YYIi~g~VYQ 62 (79)
...|.+|||-+|++|-
T Consensus 149 ~~sLk~~YIr~G~vYL 164 (222)
T 2dla_A 149 DEKLANYYIYEGRVYL 164 (222)
T ss_dssp TSCGGGSEEETTEEEE
T ss_pred ccccceEEEEcCeEEe
Confidence 3578999999999996
No 6
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=22.49 E-value=49 Score=18.92 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=20.0
Q ss_pred hcccCcceeEEEeecCCCceEEEEEee
Q psy7121 14 PILNMTGLEYIVLHVQEPILYVIRKQH 40 (79)
Q Consensus 14 ~L~~m~GiEy~l~~~~eP~lfVIrKq~ 40 (79)
-|+.++||+=+-.--..-.+|+|.|-.
T Consensus 6 glk~v~gI~rVti~K~~~~lf~i~~P~ 32 (54)
T 3mcb_A 6 GLRQVTGVTRVTIRKSKNILFVITKPD 32 (54)
T ss_dssp TCEECTTEEEEEEESSSSEEEEESSCE
T ss_pred CCEECCCEEEEEEEeCCCEEEEECCCc
Confidence 377889998888766566788887633
No 7
>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B
Probab=22.27 E-value=32 Score=19.38 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=11.7
Q ss_pred hhhcccCcceeEEE
Q psy7121 12 QEPILNMTGLEYIV 25 (79)
Q Consensus 12 ~~~L~~m~GiEy~l 25 (79)
-+.|++.+||+|+=
T Consensus 44 ~~~L~~~p~V~yVE 57 (65)
T 2z30_B 44 VGKLKKMPGVEKVE 57 (65)
T ss_dssp HHHHHTSTTEEEEE
T ss_pred HHHHhcCCCceEEe
Confidence 46799999999974
No 8
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=22.00 E-value=51 Score=19.40 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=20.5
Q ss_pred hcccCcceeEEEeecCCCceEEEEEee
Q psy7121 14 PILNMTGLEYIVLHVQEPILYVIRKQH 40 (79)
Q Consensus 14 ~L~~m~GiEy~l~~~~eP~lfVIrKq~ 40 (79)
-|+.++||+=+-.--..-.+|+|.|-.
T Consensus 12 glk~v~gI~rVtirK~~~~lf~i~~Pd 38 (61)
T 3mce_A 12 GLRQVTGVTRVTIRKSKNILFVITKPD 38 (61)
T ss_dssp TCEECSSEEEEEEEETTTEEEEESSCE
T ss_pred CCeECCCEEEEEEEecCCEEEEECCCc
Confidence 477899999888776666788887633
No 9
>3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides}
Probab=21.90 E-value=41 Score=21.63 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=10.3
Q ss_pred EEEecCeEeeCC
Q psy7121 53 YYIIAGVVYQAP 64 (79)
Q Consensus 53 YYIi~g~VYQAP 64 (79)
+=|+||.||-||
T Consensus 392 ~Vi~~G~vvkap 403 (403)
T 3mtw_A 392 FVMKGGAVVKAP 403 (403)
T ss_dssp EEEETTEEEECC
T ss_pred EEEECCEEEeCc
Confidence 457899999998
No 10
>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3
Probab=20.17 E-value=22 Score=24.47 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=18.3
Q ss_pred eeEEEEecCeEeeCCChHHHHh
Q psy7121 50 IADYYIIAGVVYQAPDLASVIS 71 (79)
Q Consensus 50 la~YYIi~g~VYQAP~l~~vl~ 71 (79)
-++|.|+|-+||||+|-...+.
T Consensus 185 Gad~iVvGR~I~~a~dP~~aa~ 206 (213)
T 1vqt_A 185 IANFAVLGREIYLSENPREKIK 206 (213)
T ss_dssp TCSEEEESHHHHTSSCHHHHHH
T ss_pred CCCEEEEChhhcCCCCHHHHHH
Confidence 4789999999999999766543
No 11
>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B
Probab=20.13 E-value=37 Score=19.26 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=13.0
Q ss_pred hhhhhcccCcceeEEE
Q psy7121 10 HVQEPILNMTGLEYIV 25 (79)
Q Consensus 10 ~~~~~L~~m~GiEy~l 25 (79)
..-++|++++|++|+-
T Consensus 53 ~~~~~L~~~p~V~~Ve 68 (80)
T 3cnq_P 53 KAVEELKKDPSVAYVE 68 (80)
T ss_dssp HHHHHHHTCTTEEEEE
T ss_pred HHHHHHHhCCCccEEE
Confidence 4467899999999885
Done!