Query psy7121
Match_columns 79
No_of_seqs 105 out of 159
Neff 4.2
Searched_HMMs 13730
Date Fri Aug 16 18:41:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7121.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7121hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jgta2 d.153.1.1 (A:4-209) be 59.1 20 0.0014 23.3 7.0 55 12-73 108-162 (206)
2 d1gph12 d.153.1.1 (1:1-234) Gl 31.3 56 0.0041 20.4 6.6 55 9-70 145-199 (234)
3 d1iwga1 d.58.44.1 (A:38-134) M 31.1 31 0.0023 19.4 3.8 32 9-40 26-57 (97)
4 d1ct9a2 d.153.1.1 (A:1-192) As 26.3 69 0.005 19.8 5.4 57 10-71 109-166 (192)
5 d1ooya2 c.124.1.2 (A:1-242) Su 24.1 24 0.0018 23.4 2.7 31 14-44 149-179 (242)
6 d1osda_ d.58.17.1 (A:) Mercuri 20.8 18 0.0013 19.2 1.2 30 10-39 20-49 (72)
7 d3dxoa1 d.17.4.19 (A:1-117) Un 20.0 21 0.0015 19.8 1.4 26 2-27 45-70 (117)
8 d2fnua1 c.67.1.4 (A:2-372) Spo 19.3 12 0.0009 24.8 0.3 22 6-27 31-52 (371)
9 d1qupa2 d.58.17.1 (A:2-73) Cop 19.1 53 0.0039 17.3 3.1 27 9-35 21-47 (72)
10 d2fkla1 d.230.3.1 (A:126-189) 18.2 17 0.0012 20.5 0.7 11 15-25 51-61 (64)
No 1
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}
Probab=59.12 E-value=20 Score=23.32 Aligned_cols=55 Identities=9% Similarity=0.169 Sum_probs=39.2
Q ss_pred hhhcccCcceeEEEeecCCCceEEEEEeeecCCCCceeeeEEEEecCeEeeCCChHHHHhhh
Q psy7121 12 QEPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSR 73 (79)
Q Consensus 12 ~~~L~~m~GiEy~l~~~~eP~lfVIrKq~R~sp~~~~~la~YYIi~g~VYQAP~l~~vl~sR 73 (79)
++.|+.+.|. |.++-...-.+|++|-+. -..|| +|+..++.++-|.++..++..+
T Consensus 108 ~~~l~~l~G~-Fa~vi~d~~~l~laRD~~-----G~KPL-yy~~~~~~~~fASe~kaLl~~~ 162 (206)
T d1jgta2 108 LHAFRLVNGR-FATVVRTGDRVLLATDHA-----GSVPL-YTCVAPGEVRASTEAKALAAHR 162 (206)
T ss_dssp GGGGGTCCEE-EEEEEEETTEEEEEECTT-----CCSCC-EEEEETTEEEEESCHHHHHTC-
T ss_pred HHHHHHHHhh-hheeeeecceEEEEEecc-----cceeE-EEEEcCCceEechhhHHHHhCC
Confidence 5788888896 444444445688876533 34677 7888899999999999887653
No 2
>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=31.34 E-value=56 Score=20.38 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=38.6
Q ss_pred hhhhhhcccCcceeEEEeecCCCceEEEEEeeecCCCCceeeeEEEEecCeEeeCCChHHHH
Q psy7121 9 LHVQEPILNMTGLEYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVI 70 (79)
Q Consensus 9 ~~~~~~L~~m~GiEy~l~~~~eP~lfVIrKq~R~sp~~~~~la~YYIi~g~VYQAP~l~~vl 70 (79)
+.+++.++++.| .|.++-.....++++|. +..+.|| .|+.-++.++-|-....+.
T Consensus 145 ~ai~~~~~~l~G-~~a~~i~~~~~~~~~rD-----~~G~~PL-~~g~~~~~~~~aSE~~al~ 199 (234)
T d1gph12 145 DQIKNSLSMLKG-AYAFLIMTETEMIVALD-----PNGLRPL-SIGMMGDAYVVASETCAFD 199 (234)
T ss_dssp HHHHHHHTTCCE-EEEEEEECSSCEEEEEC-----TTCCSCC-EEEEETTEEEEESSTHHHH
T ss_pred HHHHHHHHhcCC-ceEEEEeecCceeEEEc-----CCCCcCE-EEEecCCEEEEEECHHHHh
Confidence 356778889999 45666666677888874 3345677 4567788888888877664
No 3
>d1iwga1 d.58.44.1 (A:38-134) Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia coli [TaxId: 562]}
Probab=31.08 E-value=31 Score=19.40 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=23.0
Q ss_pred hhhhhhcccCcceeEEEeecCCCceEEEEEee
Q psy7121 9 LHVQEPILNMTGLEYIVLHVQEPILYVIRKQH 40 (79)
Q Consensus 9 ~~~~~~L~~m~GiEy~l~~~~eP~lfVIrKq~ 40 (79)
.-+|++|+.+.|++++-..+.+-..-.|.=..
T Consensus 26 ~plE~~l~~v~gi~~i~S~S~~~G~~~i~v~f 57 (97)
T d1iwga1 26 QVIEQNMNGIDNLMYMSSNSDSTGTVQITLTF 57 (97)
T ss_dssp HHHHHHCCCCSSCCEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHHhCCCCcEEEEEEEccCCcEEEEEEE
Confidence 35799999999999999887643444444333
No 4
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.33 E-value=69 Score=19.76 Aligned_cols=57 Identities=14% Similarity=0.277 Sum_probs=37.6
Q ss_pred hhhhhcccCcce-eEEEeecCCCceEEEEEeeecCCCCceeeeEEEEecCeEeeCCChHHHHh
Q psy7121 10 HVQEPILNMTGL-EYIVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVIS 71 (79)
Q Consensus 10 ~~~~~L~~m~Gi-Ey~l~~~~eP~lfVIrKq~R~sp~~~~~la~YYIi~g~VYQAP~l~~vl~ 71 (79)
.-++.++++.|. -|++....+..|++.|-+. -+.||-+.+-=+|.++-|-.+..+++
T Consensus 109 ~g~~~~~~l~G~fa~~i~d~~~~~l~~aRD~~-----G~kPLyy~~~~~g~~~fsSE~k~L~~ 166 (192)
T d1ct9a2 109 KGPEFLDDLQGMFAFALYDSEKDAYLIGRDHL-----GIIPLYMGYDEHGQLYVASEMKALVP 166 (192)
T ss_dssp HTTTTGGGCCEEEEEEEEETTTTEEEEEECTT-----CCSCCEEEECTTCCEEEESSGGGTTT
T ss_pred cchhhhhhhhhheEEEEEecCcceeEEEEccc-----cceeEEEEEecCcEEEEEeCHHHHHH
Confidence 346678899998 4455556777899988533 35566444444667888887776653
No 5
>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=24.13 E-value=24 Score=23.37 Aligned_cols=31 Identities=6% Similarity=0.160 Sum_probs=26.0
Q ss_pred hcccCcceeEEEeecCCCceEEEEEeeecCC
Q psy7121 14 PILNMTGLEYIVLHVQEPILYVIRKQHRHSM 44 (79)
Q Consensus 14 ~L~~m~GiEy~l~~~~eP~lfVIrKq~R~sp 44 (79)
++.++.|-||.+..+..|++-+||=+.=...
T Consensus 149 ~~~~~~Gee~l~~~a~~~DvAlI~at~ADe~ 179 (242)
T d1ooya2 149 EVREFNGQHFILEEAIRGDFALVKAWKADQA 179 (242)
T ss_dssp CEEEETTEEEEEEECCCEEEEEEEEEEEETT
T ss_pred eeEeeCCceEEEEeccCCCEEEEEecccCCC
Confidence 3456899999999999999999998876543
No 6
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}
Probab=20.79 E-value=18 Score=19.17 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=23.7
Q ss_pred hhhhhcccCcceeEEEeecCCCceEEEEEe
Q psy7121 10 HVQEPILNMTGLEYIVLHVQEPILYVIRKQ 39 (79)
Q Consensus 10 ~~~~~L~~m~GiEy~l~~~~eP~lfVIrKq 39 (79)
..+..|++++|++.+-+......+.|....
T Consensus 20 ~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~ 49 (72)
T d1osda_ 20 TVKKAISKVEGVSKVDVTFETRQAVVTFDD 49 (72)
T ss_dssp HHHHHHHTSTTEEEEEEETTTTEEEEEEET
T ss_pred HHHHHHHcCCCcEEEEEEcCCCEEEEEECC
Confidence 468899999999999988776666666543
No 7
>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=20.02 E-value=21 Score=19.83 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=22.7
Q ss_pred cchhhhhhhhhhhcccCcceeEEEee
Q psy7121 2 TGLEYIVLHVQEPILNMTGLEYIVLH 27 (79)
Q Consensus 2 ~~~e~~~~~~~~~L~~m~GiEy~l~~ 27 (79)
+|.|.+...++.-++..+|+.|.+.+
T Consensus 45 ~G~~ai~~~~~~~~~~~~~~~~~~~~ 70 (117)
T d3dxoa1 45 EGQQGIAAMIEAARQKFPGYRFVLAG 70 (117)
T ss_dssp EHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 57788888899999999999998875
No 8
>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}
Probab=19.35 E-value=12 Score=24.80 Aligned_cols=22 Identities=14% Similarity=0.227 Sum_probs=18.8
Q ss_pred hhhhhhhhhcccCcceeEEEee
Q psy7121 6 YIVLHVQEPILNMTGLEYIVLH 27 (79)
Q Consensus 6 ~~~~~~~~~L~~m~GiEy~l~~ 27 (79)
.+...||++|.++.|.+|+++-
T Consensus 31 ~~v~~fE~~~~~~~g~k~ai~~ 52 (371)
T d2fnua1 31 KRSLLFEEALCEFLGVKHALVF 52 (371)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHHHHCcCeEEEE
Confidence 3567899999999999998865
No 9
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.10 E-value=53 Score=17.30 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=21.8
Q ss_pred hhhhhhcccCcceeEEEeecCCCceEE
Q psy7121 9 LHVQEPILNMTGLEYIVLHVQEPILYV 35 (79)
Q Consensus 9 ~~~~~~L~~m~GiEy~l~~~~eP~lfV 35 (79)
..++..|.+++|++-+-+......+-|
T Consensus 21 ~~Iek~l~~~~gV~~v~vdl~~~~v~V 47 (72)
T d1qupa2 21 NDIKACLKNVPGINSLNFDIEQQIMSV 47 (72)
T ss_dssp HHHHHHHTTCTTEEEEEEETTTTEEEE
T ss_pred HHHHHHHhcCCCeeEEEEECCCCEEEE
Confidence 467899999999999888877666655
No 10
>d2fkla1 d.230.3.1 (A:126-189) Amyloid beta a4 protein copper binding domain (domain 2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.16 E-value=17 Score=20.46 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=8.5
Q ss_pred cccCcceeEEE
Q psy7121 15 ILNMTGLEYIV 25 (79)
Q Consensus 15 L~~m~GiEy~l 25 (79)
+..++|+|||=
T Consensus 51 ~d~F~GvEfVC 61 (64)
T d2fkla1 51 IDKFRGVEFVC 61 (64)
T ss_dssp TTEEEEEEEEE
T ss_pred cCceeceeEEc
Confidence 45689999983
Done!