BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7128
(2056 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VT28|FRY_DROME Protein furry OS=Drosophila melanogaster GN=fry PE=1 SV=2
Length = 3479
Score = 467 bits (1202), Expect = e-130, Method: Compositional matrix adjust.
Identities = 280/585 (47%), Positives = 367/585 (62%), Gaps = 84/585 (14%)
Query: 1499 CSYPTRGENVEQSSRLCTQELRNWIR----PSEQPPWPSCSEHADQNVIDVIDKACPDIL 1554
C+Y T + + + L +E++N +R P +PP +IDV+D+ P I+
Sbjct: 1042 CNYRTY---LRKLAALILKEVKNLMRALGIPETEPP-----------LIDVMDRCVPGII 1087
Query: 1555 DQCMSQLTCADKTAALSASCIDLQWIADRSASIWTAGIHEDSNRNG-SVLNLSPSCSAP- 1612
++C+ QL +KTA L+A+CIDLQWIA+RS+ +W AG+ +D++++ S LNLS S S P
Sbjct: 1088 EKCLPQLPQTEKTAILNANCIDLQWIAERSSGVWLAGLTDDNSKSSTSTLNLSQSSSTPN 1147
Query: 1613 -------------DPWGFCLFQFLQKGRVLTYCPSAVAQAWPIVYSRLHTLFPTIGKKTS 1659
DPW CLF L++ VL CPSAVAQAWPI ++RL+ L+
Sbjct: 1148 ASATAASSPQLPFDPWATCLFGLLERQNVLQQCPSAVAQAWPICFTRLNALY-------- 1199
Query: 1660 YCALTYYFLLSSLTDPTPVSDNRASLLRSSAPPRK--PVSERDSFLSLWRYLAIFSARVV 1717
S+ DPTPVSDNRASLLRSSAP +K S++DS+L LWR + R+V
Sbjct: 1200 -----------SVIDPTPVSDNRASLLRSSAPTKKVPTESQKDSYLRLWRNQVACAMRLV 1248
Query: 1718 PPVPYPTPRCASPDLSLSWSPENVGGERGGAGVENKPAPTASPPPSPTGLYKLLVPLLRC 1777
P +P RCASPDLSLS SP+++ +R +A SP LYKL+VPLLRC
Sbjct: 1249 PQIPSVAVRCASPDLSLSSSPDSLNADRSDK--------SAMGSASPQALYKLVVPLLRC 1300
Query: 1778 DTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDRKTENMRRRRRRDALRLQLVRVF 1837
+ DVRDA V+ALG IN +ALKDLMEEL VYIREAVD K ENMRRRRRRDALRLQ+VRV
Sbjct: 1301 EVVDVRDAAVNALGLINHDALKDLMEELVVYIREAVDCKQENMRRRRRRDALRLQVVRVL 1360
Query: 1838 ELIAEHGTFGACSPTMP----GLLSPLAEYVDGARLCLELEADKQIL--REIKAHFCNFV 1891
E IAE+GTFG + + L Y+ GA L E DK L RE+KAHFCNF+
Sbjct: 1361 EKIAENGTFGVSTCVLERDTMSLHPTFVLYISGAMGYLTSETDKDNLSIREVKAHFCNFI 1420
Query: 1892 CKMIHSFPLESRQTLLKRDLRRNLFSLFTSWAGQYGRNLNITQSYSVSMPNPPASNPGPE 1951
KMI +FPLE+ TLL R L+RNLF+LF +W G + + L T ++
Sbjct: 1421 RKMIKNFPLEACATLLSRVLKRNLFNLFAAWCGSFSKPLGYTMQSDHTL----------- 1469
Query: 1952 ALKTSEEELQLTSLSAMSAVLTCGPVFDPSTLLAEDGVLYPWLDMLLASSEEKTYQIGCQ 2011
EE+LQ ++L AMSA+L CG +F+PS L +D ++Y WLDMLL S EK YQ+
Sbjct: 1470 ----EEEKLQFSALQAMSALLCCGQIFNPS-YLQDDSIIYKWLDMLLTSKNEKIYQLARD 1524
Query: 2012 TVILLLECNPDMGPLLDWVVDRCYTASVQVADGCFLALATLFSAR 2056
TV+LLLE NPD+G LL+WV+DRCYT++ + AD CFLALA++FSA+
Sbjct: 1525 TVVLLLESNPDIGQLLEWVIDRCYTSTPREADACFLALASIFSAK 1569
Score = 292 bits (747), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/175 (78%), Positives = 156/175 (89%), Gaps = 1/175 (0%)
Query: 717 ERRDLAVEFVFCLILIEVLKQLPFHPGHDNLVTYIETVAFKHFKYREGIQNDPNATNIHT 776
+RR+ AVEF+FCL LIE+LKQLP+HPGH++LV IE +AFKHFKY++G+QN+PNA NIH
Sbjct: 389 QRREAAVEFIFCLALIEILKQLPYHPGHEDLVRSIENLAFKHFKYKDGLQNNPNALNIHM 448
Query: 777 VADLYAEVLGVLAQSRFQSVRKRFMSELKELRFKEPNTHTTQSIISLLMGMKFFRVKMVP 836
+ADLYAEV+GVLAQSRF SVRKRFMSELKELR KE + TTQSIISLLMGMKFFRVKMVP
Sbjct: 449 IADLYAEVIGVLAQSRFASVRKRFMSELKELRGKEVSPTTTQSIISLLMGMKFFRVKMVP 508
Query: 837 IEEFEASFQFMQECAQYFTDVKDKDVKHALAGLFVEILVPVAATVKNEVKFIPIV 891
IEEFEASFQFM EC QYF +VKDKD+KHALAGLFVEILVPVAA VKNEV +P V
Sbjct: 509 IEEFEASFQFMHECGQYFLEVKDKDIKHALAGLFVEILVPVAAAVKNEVN-VPCV 562
Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/143 (86%), Positives = 130/143 (90%), Gaps = 4/143 (2%)
Query: 1141 ESLYRLLWVYMIRIKCESNSATQSRLQSIVNSLFPKGSKAVVPRDTPLNIFVKIIQFIAQ 1200
ESL+RLLWVYMIRIKCESNSAT SRLQSIVNSLFPKGSK VVPRDTPLNIFVKIIQFIAQ
Sbjct: 630 ESLFRLLWVYMIRIKCESNSATHSRLQSIVNSLFPKGSKGVVPRDTPLNIFVKIIQFIAQ 689
Query: 1201 ERLDFAMREIVFDLLSVGRPIKLILTPERMSIGLRAFLVVADSLQQKEGEPPMPRTSGVL 1260
ERLDFAMREIV+DLL VGR IKLIL PERMSIGLRAFLVVADSLQQK GEPPMPRT VL
Sbjct: 690 ERLDFAMREIVYDLLCVGRSIKLILNPERMSIGLRAFLVVADSLQQKAGEPPMPRTVPVL 749
Query: 1261 PSGNTLRVKKTYLNKVSKTYLIL 1283
PSGNTLRVKKT+ +K Y++L
Sbjct: 750 PSGNTLRVKKTF----NKMYVLL 768
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 74/88 (84%), Gaps = 1/88 (1%)
Query: 951 EEPDEMITGERKPRIDLFRTCVAAVPRLIPDAMTGGELVDLLSRLTLHMDEELRALAYQS 1010
+EPDEM++GERKPRIDLFRTCVAAVPRLIPD MT ELVD+LSRL++HMDEELR L +QS
Sbjct: 814 KEPDEMLSGERKPRIDLFRTCVAAVPRLIPDTMTPHELVDMLSRLSVHMDEELRILTHQS 873
Query: 1011 LQTLVIDFPDWRHDVLAVF-YFGTHDMT 1037
L TLVIDFPDWR DV+ + F D+T
Sbjct: 874 LTTLVIDFPDWRQDVVHGYTQFLVRDVT 901
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 503 RDSSVTVLPWAGGQRGGRAATCGTAADSSNNVRPGEYVMRSLFADFTAQAEKKLDQVLAE 562
R S + VLP + Q A A+ ++ RPGE VMR+LF+DFTAQAEKK++ V+ E
Sbjct: 248 RSSIINVLP-SYTQAEMHALAARVASVETSAPRPGEIVMRNLFSDFTAQAEKKIELVMLE 306
Query: 563 PQEKPLSKVLQRGEDPVFDQLLIAFGSVAEHCLPSILRALFAWYERQM 610
+K LSK+LQRGED FDQLL A GSVAEHCLPS+L L AW+ RQ+
Sbjct: 307 SADKNLSKLLQRGEDQQFDQLLSALGSVAEHCLPSLLHTLLAWHRRQL 354
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 61/97 (62%), Gaps = 15/97 (15%)
Query: 1038 IDLQWIADRSASIWTAGIHEDSNRNG-SVLNLSPSCSAP--------------DPWGFCL 1082
IDLQWIA+RS+ +W AG+ +D++++ S LNLS S S P DPW CL
Sbjct: 1108 IDLQWIAERSSGVWLAGLTDDNSKSSTSTLNLSQSSSTPNASATAASSPQLPFDPWATCL 1167
Query: 1083 FQFLQKGRVLTYCPSAVAQAWPIVYSRLHTLFPTIVP 1119
F L++ VL CPSAVAQAWPI ++RL+ L+ I P
Sbjct: 1168 FGLLERQNVLQQCPSAVAQAWPICFTRLNALYSVIDP 1204
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 27/117 (23%)
Query: 123 MGDSESRSDVTDGSSQVTSRTDCDTPDSSV----TVLPWAGGQR---------------- 162
+GD E S VT S V+ ++ P + ++LPW R
Sbjct: 205 VGDVEQSSAVTYQSLPVSRQSYASPPALIIPQRQSLLPWGAHSRSSIINVLPSYTQAEMH 264
Query: 163 --GGRAATCGTAADSGNNVRPGEYVMRSLFADFTAQAEKKLDQVLAEPQVQIISKYV 217
R A+ T+A RPGE VMR+LF+DFTAQAEKK++ V+ E + +SK +
Sbjct: 265 ALAARVASVETSAP-----RPGEIVMRNLFSDFTAQAEKKIELVMLESADKNLSKLL 316
>sp|O94915|FRYL_HUMAN Protein furry homolog-like OS=Homo sapiens GN=FRYL PE=1 SV=2
Length = 3013
Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 121/171 (70%), Positives = 146/171 (85%), Gaps = 1/171 (0%)
Query: 715 LQERRDLAVEFVFCLILIEVLKQLPFHPGHDNLVTYIETVAFKHFKYREGIQNDPNATNI 774
L ERRDLAV+F+FCL+L+EVLKQ+P HP D LV + +AFKHFK++EG N N+
Sbjct: 115 LLERRDLAVDFIFCLVLVEVLKQIPVHPVPDPLVHEVLNLAFKHFKHKEGYSG-TNTGNV 173
Query: 775 HTVADLYAEVLGVLAQSRFQSVRKRFMSELKELRFKEPNTHTTQSIISLLMGMKFFRVKM 834
H +ADLYAEV+GVLAQS+FQ+VRK+F++ELKELR KE + H QS+ISL+MGMKFFRVKM
Sbjct: 174 HIIADLYAEVIGVLAQSKFQAVRKKFVTELKELRQKEQSPHVVQSVISLIMGMKFFRVKM 233
Query: 835 VPIEEFEASFQFMQECAQYFTDVKDKDVKHALAGLFVEILVPVAATVKNEV 885
P+E+FEASFQFMQECAQYF +VKDKD+KHALAGLFVEIL+PVAA VKNEV
Sbjct: 234 YPVEDFEASFQFMQECAQYFLEVKDKDIKHALAGLFVEILIPVAAAVKNEV 284
Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 180/530 (33%), Positives = 276/530 (52%), Gaps = 69/530 (13%)
Query: 1539 DQNVIDVIDKACPDILDQCMSQLTCADKTAALSA-SCIDLQWIADRSASIWTAGIHEDSN 1597
D+ IDV+D+ P IL+ + LT AD+T L S IDLQ +A+ ++S + D
Sbjct: 727 DELAIDVMDRLSPSILESFI-HLTGADQTTLLYCPSSIDLQTLAEWNSSPISHQF--DVI 783
Query: 1598 RNGSVLNLSPSCSAPDPWGFCLFQFLQKGRVLTYCPSAVAQAWPIVYSRLHTLFPTIGKK 1657
+ + DPW L FL++ + +C +AV+ AW Y+RL L P +
Sbjct: 784 SPSHIWIFAHVTQGQDPWIISLSSFLKQENLPKHCSTAVSYAWMFAYTRLQLLSPQVDIN 843
Query: 1658 TSYCALTYYFLLSSLTDPTPVSDNRASLLRSSAPPRKPVSERDSFLSLWRYLAIF---SA 1714
+ P++ + + SS DS++ LWR I +A
Sbjct: 844 S------------------PINAKKVNTTTSS----------DSYIGLWRNYLILCCSAA 875
Query: 1715 RVVPPVPYPTPRCASPDLSLSWSPENVGGERGGAGVENKPAPTASPPPSPTGLYKLLVPL 1774
+ RC+ P+ +L+ +P++ G +++K PSP+ L+K +VP+
Sbjct: 876 TSSSSTSAGSVRCSPPE-TLASTPDS------GYSIDSKIIGI----PSPSSLFKHIVPM 924
Query: 1775 LRCDTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDRKTENMRRRRRRDALRLQLV 1834
+R ++ ++ +++V LG N A ++L+EEL I+EA++R+ ENM+RRRRRD LR+QLV
Sbjct: 925 MRSESMEITESLVLGLGRTNPGAFRELIEELHPIIKEALERRPENMKRRRRRDILRVQLV 984
Query: 1835 RVFELIAE-----HGTFGACSPTMPGLLSPLAEYVDGARLCLEL--EADKQILREIKAHF 1887
R+FEL+A+ H G L + L EYVD R LE E D L++I+ HF
Sbjct: 985 RIFELLADAGVISHSASGGLDNETHFLNNTLLEYVDLTRQLLEAENEKDSDTLKDIRCHF 1044
Query: 1888 CNFVCKMIHSFPLESRQTLL-KRDLRRNLFSLFTSWAGQYGRNLNITQSYSVSMPNPPAS 1946
V +I + P+ R+++ ++ LR +LF LF+ WAG + S+ P
Sbjct: 1045 SALVANIIQNVPVHQRRSIFPQQSLRHSLFMLFSHWAGPF------------SIMFTPLD 1092
Query: 1947 NPGPEALKTSEEELQLTSLSAMSAVLTCGPVFDPSTLLAEDGVLYPWLDMLLASSEEKTY 2006
++ + Q +L AMSAVL CGPV D + L+ DG LY WLD +L S ++K +
Sbjct: 1093 RYSDRNMQINRH--QYCALKAMSAVLCCGPVAD-NVGLSSDGYLYKWLDNILDSLDKKVH 1149
Query: 2007 QIGCQTVILLLECNPDMGPLLDWVVDRCYTASVQVADGCFLALATLFSAR 2056
Q+GC+ V LLLE NPD L+ W VDRCYT S +VA GCF A+A +F R
Sbjct: 1150 QLGCEAVTLLLELNPDQSNLMYWAVDRCYTGSGRVAAGCFKAIANVFQNR 1199
Score = 228 bits (581), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 108/136 (79%), Positives = 123/136 (90%), Gaps = 1/136 (0%)
Query: 1141 ESLYRLLWVYMIRIKCESNSATQSRLQSIVNSLFPKGSKAVVPRDTPLNIFVKIIQFIAQ 1200
ESLYRLLWVY+IRIKCESN+ TQSRL SIV++LFPKGS++VVPRDTPLNIFVKIIQFIAQ
Sbjct: 357 ESLYRLLWVYVIRIKCESNTVTQSRLMSIVSALFPKGSRSVVPRDTPLNIFVKIIQFIAQ 416
Query: 1201 ERLDFAMREIVFDLLSVGRPIK-LILTPERMSIGLRAFLVVADSLQQKEGEPPMPRTSGV 1259
ERLDFAM+EI+FDLLSVG+ K + PERM+IGLR FLV+ADSLQQK+GEPPMP T +
Sbjct: 417 ERLDFAMKEIIFDLLSVGKSTKTFTINPERMNIGLRVFLVIADSLQQKDGEPPMPTTGVI 476
Query: 1260 LPSGNTLRVKKTYLNK 1275
LPSGNTLRVKK +LNK
Sbjct: 477 LPSGNTLRVKKIFLNK 492
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 82/103 (79%), Gaps = 5/103 (4%)
Query: 936 PTSRSDVQCINHCTTEEPDEMITGERKPRIDLFRTCVAAVPRLIPDAMTGGELVDLLSRL 995
P + VQ N +EP++MITGERKP+IDLFRTC+AA+PRLIPD M+ +L++LL+RL
Sbjct: 529 PMCMTSVQMSN----KEPEDMITGERKPKIDLFRTCIAAIPRLIPDGMSRTDLIELLARL 584
Query: 996 TLHMDEELRALAYQSLQTLVIDFPDWRHDVLAVF-YFGTHDMT 1037
T+HMDEELRALA+ +LQ L++DFPDWR DVL+ F YF ++T
Sbjct: 585 TIHMDEELRALAFNTLQALMLDFPDWREDVLSGFVYFIVREVT 627
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 63/77 (81%)
Query: 533 NVRPGEYVMRSLFADFTAQAEKKLDQVLAEPQEKPLSKVLQRGEDPVFDQLLIAFGSVAE 592
+V+PGEYV++SLFA+F QAEKK++ V+AEP EK LS+ LQRGED FDQL+ + SVAE
Sbjct: 9 DVKPGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQFDQLISSMSSVAE 68
Query: 593 HCLPSILRALFAWYERQ 609
HCLPS+LR LF WY RQ
Sbjct: 69 HCLPSLLRTLFDWYRRQ 85
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 36/48 (75%)
Query: 178 NVRPGEYVMRSLFADFTAQAEKKLDQVLAEPQVQIISKYVFHTRTMSF 225
+V+PGEYV++SLFA+F QAEKK++ V+AEP +++S+ + + F
Sbjct: 9 DVKPGEYVIKSLFAEFAVQAEKKIEVVMAEPLEKLLSRSLQRGEDLQF 56
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1076 DPWGFCLFQFLQKGRVLTYCPSAVAQAWPIVYSRLHTLFPTI---VPFLTTHSFTLISAN 1132
DPW L FL++ + +C +AV+ AW Y+RL L P + P T S++
Sbjct: 799 DPWIISLSSFLKQENLPKHCSTAVSYAWMFAYTRLQLLSPQVDINSPINAKKVNTTTSSD 858
Query: 1133 SFI 1135
S+I
Sbjct: 859 SYI 861
>sp|Q5TBA9|FRY_HUMAN Protein furry homolog OS=Homo sapiens GN=FRY PE=1 SV=1
Length = 3013
Score = 254 bits (648), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 119/171 (69%), Positives = 144/171 (84%), Gaps = 1/171 (0%)
Query: 715 LQERRDLAVEFVFCLILIEVLKQLPFHPGHDNLVTYIETVAFKHFKYREGIQNDPNATNI 774
L ERRDLA++F+F L+LIEVLKQ+P HP D+L+ + +AFKHFKY+EG PN N+
Sbjct: 163 LMERRDLAIDFIFSLVLIEVLKQIPLHPVIDSLIHDVINLAFKHFKYKEGYLG-PNTGNM 221
Query: 775 HTVADLYAEVLGVLAQSRFQSVRKRFMSELKELRFKEPNTHTTQSIISLLMGMKFFRVKM 834
H VADLYAEV+GVLAQ++F +V+K+FM+ELKELR KE N + QSIISL+MGMKFFR+KM
Sbjct: 222 HIVADLYAEVIGVLAQAKFPAVKKKFMAELKELRHKEQNPYVVQSIISLIMGMKFFRIKM 281
Query: 835 VPIEEFEASFQFMQECAQYFTDVKDKDVKHALAGLFVEILVPVAATVKNEV 885
P+E+FEAS QFMQECA YF +VKDKD+KHALAGLFVEILVPVAA VKNEV
Sbjct: 282 YPVEDFEASLQFMQECAHYFLEVKDKDIKHALAGLFVEILVPVAAAVKNEV 332
Score = 254 bits (648), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 189/556 (33%), Positives = 287/556 (51%), Gaps = 77/556 (13%)
Query: 1512 SRLCTQELRNWIRPSEQPPWPSCSEHADQNVIDVIDKACPDILDQCMSQLTCADKTAALS 1571
S L +E+R QP E D+ +IDV+D+ IL+ + T L+
Sbjct: 760 SVLILKEIRALFIALGQP------EDDDRPMIDVMDQLSSSILESFIHVAVSDSATLPLT 813
Query: 1572 ASCIDLQWIADRSASIWTAGIHEDSNRNGSVLNLSPSCSAPDPWGFCLFQFLQKGRVLTY 1631
+ +DLQW+ + +A + + H D V + S DPW CLF FL++ + +
Sbjct: 814 HN-VDLQWLVEWNAVLVNS--HYDVKSPSHVWIFAQSVK--DPWVLCLFSFLRQENLPKH 868
Query: 1632 CPSAVAQAWPIVYSRLHTLFPTIGKKTSYCALTYYFLLSSLTDP-TPVSDNRASLLRSSA 1690
CP+A++ AWP ++RL ++ P L DP +P++ + S S
Sbjct: 869 CPTALSYAWPYAFTRLQSVMP-------------------LVDPNSPINAKKTSTAGSG- 908
Query: 1691 PPRKPVSERDSFLSLWR-YLAIFSARVVPPVPYPTP-RCASPDLSLSWSPENVGGERGGA 1748
D++++LWR YL + P + P R ++P++ ++ +P+ G
Sbjct: 909 ---------DNYVTLWRNYLILCFGVAKPSIMSPGHLRASTPEI-MATTPD------GTV 952
Query: 1749 GVENKPAPTASPPPSPTGLYKLLVPLLRCDTTDVRDAVVHALGNINSEALKDLMEELSVY 1808
+NK T PS L K LVPL+R ++ ++ +++V G NS ++L+EEL
Sbjct: 953 SYDNKAIGT----PSVGVLLKQLVPLMRLESIEITESLVLGFGRTNSLVFRELVEELHPL 1008
Query: 1809 IREAVDRKTENMRRRRRRDALRLQLVRVFELIAEHG-----TFGACSPTMPGLLSPLAEY 1863
++EA++R+ EN +RR RRD LRLQL+R+FEL+A+ G T GA L + EY
Sbjct: 1009 MKEALERRPENKKRRERRDLLRLQLLRIFELLADAGVISDSTNGALERDTLALGALFLEY 1068
Query: 1864 VDGARLCLELEADKQ--ILREIKAHFCNFVCKMIHSFPLESRQTLL-KRDLRRNLFSLFT 1920
VD R+ LE E DK+ IL++I+AHF V +I P+ R+ L ++ LR +LF LF+
Sbjct: 1069 VDLTRMLLEAENDKEVEILKDIRAHFSAMVANLIQCVPVHHRRFLFPQQSLRHHLFILFS 1128
Query: 1921 SWAGQYGRNLNITQSYSVSMPNPPASNPGPEALKTSEEELQLTSLSAMSAVLTCGPVFDP 1980
WAG + YS Q +L AMSAVL CGPVFD
Sbjct: 1129 QWAGPFSIMFTPLDRYS--------------DRNHQITRYQYCALKAMSAVLCCGPVFD- 1173
Query: 1981 STLLAEDGVLYPWLDMLLASSEEKTYQIGCQTVILLLECNPDMGPLLDWVVDRCYTASVQ 2040
+ L+ DG LY WLD +LA + + +Q+GC+ V+LLLE NPD L +W +DRCYT S Q
Sbjct: 1174 NVGLSPDGYLYKWLDNILACQDLRVHQLGCEVVVLLLELNPDQINLFNWAIDRCYTGSYQ 1233
Query: 2041 VADGCFLALATLFSAR 2056
+A GCF A+AT+ +R
Sbjct: 1234 LASGCFKAIATVCGSR 1249
Score = 230 bits (587), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 110/136 (80%), Positives = 122/136 (89%), Gaps = 1/136 (0%)
Query: 1141 ESLYRLLWVYMIRIKCESNSATQSRLQSIVNSLFPKGSKAVVPRDTPLNIFVKIIQFIAQ 1200
ESLYRLLWVYMIRIKCESN+ATQSRL +I+ +LFPKGS+ VVPRD PLNIFVKIIQFIAQ
Sbjct: 405 ESLYRLLWVYMIRIKCESNTATQSRLITIITTLFPKGSRGVVPRDMPLNIFVKIIQFIAQ 464
Query: 1201 ERLDFAMREIVFDLLSVGRPIKLI-LTPERMSIGLRAFLVVADSLQQKEGEPPMPRTSGV 1259
ERLDFAM+EI+FD L VG+P K L PERM+IGLRAFLV+ADSLQQK+GEPPMP T V
Sbjct: 465 ERLDFAMKEIIFDFLCVGKPAKAFSLNPERMNIGLRAFLVIADSLQQKDGEPPMPVTGAV 524
Query: 1260 LPSGNTLRVKKTYLNK 1275
LPSGNTLRVKKTYL+K
Sbjct: 525 LPSGNTLRVKKTYLSK 540
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 74/90 (82%), Gaps = 4/90 (4%)
Query: 940 SDVQCINHCTTEEPDEMITGERKPRIDLFRTCVAAVPRLIPDAMTGGELVDLLSRLTLHM 999
++VQ +N +EP++MITGERKP+IDLFRTCVAA+PRL+PD M+ EL+DLL+RL++HM
Sbjct: 581 TNVQMLN----KEPEDMITGERKPKIDLFRTCVAAIPRLLPDGMSKLELIDLLARLSIHM 636
Query: 1000 DEELRALAYQSLQTLVIDFPDWRHDVLAVF 1029
D+ELR +A SLQ L++DF DWR DVL F
Sbjct: 637 DDELRHIAQNSLQGLLVDFSDWREDVLFGF 666
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 63/75 (84%)
Query: 535 RPGEYVMRSLFADFTAQAEKKLDQVLAEPQEKPLSKVLQRGEDPVFDQLLIAFGSVAEHC 594
+PGEYV++SLF +FT QAE+K+ ++AEP EKPL+K LQRGEDP FDQ++ + S++E+C
Sbjct: 61 KPGEYVLKSLFVNFTTQAERKIRIIMAEPLEKPLTKSLQRGEDPQFDQVISSMSSLSEYC 120
Query: 595 LPSILRALFAWYERQ 609
LPSILR LF WY+RQ
Sbjct: 121 LPSILRTLFDWYKRQ 135
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 1033 THDMTIDLQWIADRSASIWTAGIHEDSNRNGSVLNLSPSCSAPDPWGFCLFQFLQKGRVL 1092
TH+ +DLQW+ + +A + + H D V + S DPW CLF FL++ +
Sbjct: 813 THN--VDLQWLVEWNAVLVNS--HYDVKSPSHVWIFAQSVK--DPWVLCLFSFLRQENLP 866
Query: 1093 TYCPSAVAQAWPIVYSRLHTLFPTIVP 1119
+CP+A++ AWP ++RL ++ P + P
Sbjct: 867 KHCPTALSYAWPYAFTRLQSVMPLVDP 893
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 1427 VFHQVEGFALVMLCNVRLTPRRLSVHILREVKMLNKVLGLGLEPPTSRSDVQCIDHCTTD 1486
V H VEGFALV+LC+ ++ R+LSV IL+E++ L + LG R + +D ++
Sbjct: 737 VLHAVEGFALVLLCSFQVATRKLSVLILKEIRAL--FIALGQPEDDDRPMIDVMDQLSSS 794
Query: 1487 VMQCKTHTS 1495
+++ H +
Sbjct: 795 ILESFIHVA 803
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 29/36 (80%)
Query: 180 RPGEYVMRSLFADFTAQAEKKLDQVLAEPQVQIISK 215
+PGEYV++SLF +FT QAE+K+ ++AEP + ++K
Sbjct: 61 KPGEYVLKSLFVNFTTQAERKIRIIMAEPLEKPLTK 96
>sp|E9Q8I9|FRY_MOUSE Protein furry homolog OS=Mus musculus GN=Fry PE=1 SV=1
Length = 3020
Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 189/556 (33%), Positives = 285/556 (51%), Gaps = 77/556 (13%)
Query: 1512 SRLCTQELRNWIRPSEQPPWPSCSEHADQNVIDVIDKACPDILDQCMSQLTCADKTAALS 1571
S L +E+R QP E D+ +IDV+D+ IL+ + + +D
Sbjct: 760 SVLILKEIRALFLALGQP------EDDDRPMIDVMDQLSSSILESFI-HVAVSDSATLPP 812
Query: 1572 ASCIDLQWIADRSASIWTAGIHEDSNRNGSVLNLSPSCSAPDPWGFCLFQFLQKGRVLTY 1631
+DLQW+ + +A + + H D V + S DPW CLF FL++ + +
Sbjct: 813 THNVDLQWLVEWNAVLVNS--HYDVKSPSHVWIFAQSVK--DPWVLCLFSFLRQENLPKH 868
Query: 1632 CPSAVAQAWPIVYSRLHTLFPTIGKKTSYCALTYYFLLSSLTDP-TPVSDNRASLLRSSA 1690
CP+A++ AWP ++RL ++ P L DP +PV+ + S
Sbjct: 869 CPTALSYAWPYAFTRLQSVMP-------------------LVDPNSPVNAKKTS------ 903
Query: 1691 PPRKPVSERDSFLSLWR-YLAIFSARVVPPVPYPTP-RCASPDLSLSWSPENVGGERGGA 1748
S D++++LWR YL + P + P R ++P++ ++ +P+ G
Sbjct: 904 ----TASSGDNYVTLWRNYLILCFGVAKPSIMSPGHLRASTPEI-MATTPD------GTV 952
Query: 1749 GVENKPAPTASPPPSPTGLYKLLVPLLRCDTTDVRDAVVHALGNINSEALKDLMEELSVY 1808
+NK T PS L K LVPL+R ++ ++ +++V G NS ++L+EEL
Sbjct: 953 SYDNKAIGT----PSVGVLLKQLVPLMRLESIEITESLVLGFGRTNSLVFRELVEELHPL 1008
Query: 1809 IREAVDRKTENMRRRRRRDALRLQLVRVFELIAEHG-----TFGACSPTMPGLLSPLAEY 1863
++EA++R+ EN +RR RRD LRLQL+R+FEL+A+ G T GA L + EY
Sbjct: 1009 MKEALERRPENKKRRERRDLLRLQLLRIFELLADAGVISDSTNGALERDTLALGALFLEY 1068
Query: 1864 VDGARLCLELEADKQ--ILREIKAHFCNFVCKMIHSFPLESRQTLL-KRDLRRNLFSLFT 1920
VD R+ LE E DK+ IL++I+AHF V +I P+ R+ L ++ LR +LF LF+
Sbjct: 1069 VDLTRMLLEAENDKEVEILKDIRAHFSAMVANLIQCVPVHHRRFLFPQQSLRHHLFILFS 1128
Query: 1921 SWAGQYGRNLNITQSYSVSMPNPPASNPGPEALKTSEEELQLTSLSAMSAVLTCGPVFDP 1980
WAG + YS Q +L AMSAVL CGPVFD
Sbjct: 1129 QWAGPFSIMFTPLDRYSDR--------------NHQITRYQYCALKAMSAVLCCGPVFD- 1173
Query: 1981 STLLAEDGVLYPWLDMLLASSEEKTYQIGCQTVILLLECNPDMGPLLDWVVDRCYTASVQ 2040
+ L+ DG LY WLD +LA + + +Q+GC+ V+LLLE NPD L +W +DRCYT S Q
Sbjct: 1174 NVGLSPDGYLYKWLDNILACQDLRVHQLGCEVVMLLLELNPDQINLFNWAIDRCYTGSYQ 1233
Query: 2041 VADGCFLALATLFSAR 2056
+A GCF A+AT+ R
Sbjct: 1234 LASGCFKAIATVCGNR 1249
Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 119/171 (69%), Positives = 144/171 (84%), Gaps = 1/171 (0%)
Query: 715 LQERRDLAVEFVFCLILIEVLKQLPFHPGHDNLVTYIETVAFKHFKYREGIQNDPNATNI 774
L ERRDLA++F+F L+LIEVLKQ+P HP D+L+ I +AFKHFKY+EG PN N+
Sbjct: 163 LMERRDLAIDFIFSLVLIEVLKQIPLHPVIDSLIHDIINLAFKHFKYKEGYLG-PNTGNM 221
Query: 775 HTVADLYAEVLGVLAQSRFQSVRKRFMSELKELRFKEPNTHTTQSIISLLMGMKFFRVKM 834
H VADLYAEV+GVLAQ++F +V+K+FM+ELKELR KE + + QSIISL+MGMKFFR+KM
Sbjct: 222 HIVADLYAEVIGVLAQAKFPAVKKKFMAELKELRHKEQSPYVVQSIISLIMGMKFFRIKM 281
Query: 835 VPIEEFEASFQFMQECAQYFTDVKDKDVKHALAGLFVEILVPVAATVKNEV 885
P+E+FEAS QFMQECA YF +VKDKD+KHALAGLFVEILVPVAA VKNEV
Sbjct: 282 YPVEDFEASLQFMQECAHYFLEVKDKDIKHALAGLFVEILVPVAAAVKNEV 332
Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/136 (80%), Positives = 121/136 (88%), Gaps = 1/136 (0%)
Query: 1141 ESLYRLLWVYMIRIKCESNSATQSRLQSIVNSLFPKGSKAVVPRDTPLNIFVKIIQFIAQ 1200
ESLYRLLWVYMIRIKCESN+ATQSRL +I +LFPKGS+ VVPRD PLNIFVKIIQFIAQ
Sbjct: 405 ESLYRLLWVYMIRIKCESNTATQSRLITITTTLFPKGSRGVVPRDMPLNIFVKIIQFIAQ 464
Query: 1201 ERLDFAMREIVFDLLSVGRPIKLI-LTPERMSIGLRAFLVVADSLQQKEGEPPMPRTSGV 1259
ERLDFAM+EI+FD L VG+P K L PERM+IGLRAFLV+ADSLQQK+GEPPMP T V
Sbjct: 465 ERLDFAMKEIIFDFLCVGKPAKAFSLNPERMNIGLRAFLVIADSLQQKDGEPPMPVTGAV 524
Query: 1260 LPSGNTLRVKKTYLNK 1275
LPSGNTLRVKKTYL+K
Sbjct: 525 LPSGNTLRVKKTYLSK 540
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 74/90 (82%), Gaps = 4/90 (4%)
Query: 940 SDVQCINHCTTEEPDEMITGERKPRIDLFRTCVAAVPRLIPDAMTGGELVDLLSRLTLHM 999
++VQ +N +EP++MITGERKP+IDLFRTCVAA+PRL+PD M+ EL+DLL+RL++HM
Sbjct: 581 TNVQMLN----KEPEDMITGERKPKIDLFRTCVAAIPRLLPDGMSKLELIDLLARLSIHM 636
Query: 1000 DEELRALAYQSLQTLVIDFPDWRHDVLAVF 1029
D+ELR +A SLQ L++DF DWR DVL F
Sbjct: 637 DDELRHIAQNSLQGLLVDFSDWREDVLFGF 666
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 63/75 (84%)
Query: 535 RPGEYVMRSLFADFTAQAEKKLDQVLAEPQEKPLSKVLQRGEDPVFDQLLIAFGSVAEHC 594
+PGEYV++SLF +FT QAE+K+ ++AEP EKPL+K LQRGEDP FDQ++ + S++E+C
Sbjct: 61 KPGEYVLKSLFVNFTTQAERKIRIIMAEPLEKPLTKSLQRGEDPQFDQVISSMSSLSEYC 120
Query: 595 LPSILRALFAWYERQ 609
LPSILR LF WY+RQ
Sbjct: 121 LPSILRTLFDWYKRQ 135
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 1033 THDMTIDLQWIADRSASIWTAGIHEDSNRNGSVLNLSPSCSAPDPWGFCLFQFLQKGRVL 1092
TH+ +DLQW+ + +A + + H D V + S DPW CLF FL++ +
Sbjct: 813 THN--VDLQWLVEWNAVLVNS--HYDVKSPSHVWIFAQSVK--DPWVLCLFSFLRQENLP 866
Query: 1093 TYCPSAVAQAWPIVYSRLHTLFPTIVP 1119
+CP+A++ AWP ++RL ++ P + P
Sbjct: 867 KHCPTALSYAWPYAFTRLQSVMPLVDP 893
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 1427 VFHQVEGFALVMLCNVRLTPRRLSVHILREVKMLNKVLGLGLEPPTSRSDVQCIDHCTTD 1486
V H VEGFALV+LC+ ++ R+LSV IL+E++ L L LG R + +D ++
Sbjct: 737 VLHAVEGFALVLLCSFQVATRKLSVLILKEIRAL--FLALGQPEDDDRPMIDVMDQLSSS 794
Query: 1487 VMQCKTHTS 1495
+++ H +
Sbjct: 795 ILESFIHVA 803
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 29/36 (80%)
Query: 180 RPGEYVMRSLFADFTAQAEKKLDQVLAEPQVQIISK 215
+PGEYV++SLF +FT QAE+K+ ++AEP + ++K
Sbjct: 61 KPGEYVLKSLFVNFTTQAERKIRIIMAEPLEKPLTK 96
>sp|Q7Q107|MED6_ANOGA Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles
gambiae GN=MED6 PE=3 SV=3
Length = 267
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 93/161 (57%), Positives = 115/161 (71%), Gaps = 6/161 (3%)
Query: 217 VFHTRTMSFAIFHTMLYLCLWVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQA 276
+ + S + + M + LHVQ+PILYVIRKQHRHS + TP+ADYYIIAG VYQA
Sbjct: 55 IVRMQRQSLELLNNMTGVEYIPLHVQDPILYVIRKQHRHSPTEATPMADYYIIAGTVYQA 114
Query: 277 PDLASVISSRLLSTVHHLQSAFEEVNSLSKYNPNKGYSWD----SKMLPQGKDTVKKEI- 331
PDLASV +SR+LSTVHHLQ+AF+E +S S+Y+P+KGYSWD + + K KKE
Sbjct: 115 PDLASVFNSRILSTVHHLQTAFDEASSYSRYHPSKGYSWDFSSNKAIAEKTKTQTKKEAP 174
Query: 332 IKEEPSSIFQRQRVDMLLSELTRHFPVPPVPQAPQQNTQGN 372
+KEEPSSIFQRQRVDMLL +L R FP+ P+PQ T GN
Sbjct: 175 VKEEPSSIFQRQRVDMLLGDLLRKFPL-PLPQMTNNPTGGN 214
>sp|Q8MSX2|MED6_DROME Mediator of RNA polymerase II transcription subunit 6 OS=Drosophila
melanogaster GN=MED6 PE=1 SV=1
Length = 249
Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/141 (58%), Positives = 107/141 (75%), Gaps = 7/141 (4%)
Query: 228 FHTMLYLCLWVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSRL 287
H M+ L +LHV EPILYVIRKQHRH+ + TPIADYYII G VY+APDLA+VI+SR+
Sbjct: 60 LHNMIGLEYILLHVAEPILYVIRKQHRHNPSEATPIADYYIIGGTVYKAPDLANVINSRI 119
Query: 288 LSTVHHLQSAFEEVNSLSKYNPNKGYSWD---SKMLPQGKDTVKKEI--IKEEPS-SIFQ 341
L+TV +LQSAFEE +S ++Y+PNKGY+WD +K+ + KK+ K+E S ++FQ
Sbjct: 120 LNTVVNLQSAFEEASSYARYHPNKGYTWDFSSNKVFSDRSKSDKKDANSAKDENSGTLFQ 179
Query: 342 RQRVDMLLSELTRHFPVPPVP 362
+QRVDMLL+EL R FP PP+P
Sbjct: 180 KQRVDMLLAELLRKFP-PPIP 199
>sp|Q921D4|MED6_MOUSE Mediator of RNA polymerase II transcription subunit 6 OS=Mus
musculus GN=Med6 PE=2 SV=2
Length = 246
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 104/160 (65%), Gaps = 4/160 (2%)
Query: 217 VFHTRTMSFAIFHTMLYLCLWVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQA 276
V + ++ + M+ + +LH QEPIL++IRKQ R S Q P+ADYYIIAGV+YQA
Sbjct: 49 VVKMQRLTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQA 108
Query: 277 PDLASVISSRLLSTVHHLQSAFEEVNSLSKYNPNKGYSWDSKMLPQGKDTVKKEIIKEEP 336
PDL SVI+SR+L+ VH +QSAF+E S +Y+P+KGY W K + + K KEEP
Sbjct: 109 PDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKAKRKEEP 168
Query: 337 SSIFQRQRVDMLLSELTRHFPVPPVPQAPQQNTQGNSVPM 376
SSIFQRQRVD LL +L + FP P+ QQ + VP+
Sbjct: 169 SSIFQRQRVDALLIDLRQKFP----PRFVQQKSGEKPVPV 204
>sp|Q3SZY9|MED6_BOVIN Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus
GN=MED6 PE=2 SV=1
Length = 246
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 108/161 (67%), Gaps = 6/161 (3%)
Query: 217 VFHTRTMSFAIFHTMLYLCLWVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQA 276
V + ++ + M+ + +LH QEPIL++IRKQ R S Q P+ADYYIIAGV+YQA
Sbjct: 49 VVKMQRLTLEHLNQMVGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQA 108
Query: 277 PDLASVISSRLLSTVHHLQSAFEEVNSLSKYNPNKGYSWDSKMLPQGKDTVKKEII-KEE 335
PDL SVI+SR+L+ VH +QSAF+E S +Y+P+KGY W K + +D VK ++ KEE
Sbjct: 109 PDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDH-EEQDKVKPKVKRKEE 167
Query: 336 PSSIFQRQRVDMLLSELTRHFPVPPVPQAPQQNTQGNSVPM 376
PSSIFQRQRVD LL +L + FP P+ QQ + VP+
Sbjct: 168 PSSIFQRQRVDALLLDLRQKFP----PKFVQQKSGEKPVPV 204
>sp|Q6IQ63|MED6_DANRE Mediator of RNA polymerase II transcription subunit 6 OS=Danio
rerio GN=med6 PE=2 SV=1
Length = 254
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/120 (61%), Positives = 86/120 (71%)
Query: 238 VLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSRLLSTVHHLQSA 297
+LH QEPILY+IRKQ R S Q P+ADYYIIAGVVYQAPDL SVISSR LS VH +QSA
Sbjct: 70 LLHTQEPILYIIRKQQRQSPTQVIPLADYYIIAGVVYQAPDLGSVISSRALSAVHGIQSA 129
Query: 298 FEEVNSLSKYNPNKGYSWDSKMLPQGKDTVKKEIIKEEPSSIFQRQRVDMLLSELTRHFP 357
F+E S +Y+P+KGY W K + + K KEEPSS+FQRQRVD LL +L FP
Sbjct: 130 FDEAMSFCRYHPSKGYWWHFKDQEEKERVKPKSKRKEEPSSLFQRQRVDTLLLDLRNKFP 189
>sp|Q5RD94|MED6_PONAB Mediator of RNA polymerase II transcription subunit 6 OS=Pongo
abelii GN=MED6 PE=2 SV=1
Length = 246
Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 95/141 (67%)
Query: 217 VFHTRTMSFAIFHTMLYLCLWVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQA 276
V + ++ + M+ + +LH QEPIL++IRKQ R S Q P+ADYYIIAGV+YQA
Sbjct: 49 VVKMQRLTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQA 108
Query: 277 PDLASVISSRLLSTVHHLQSAFEEVNSLSKYNPNKGYSWDSKMLPQGKDTVKKEIIKEEP 336
PDL SVI+SR+L+ VH +QSAF+E S +Y+P+KGY W K + K KEEP
Sbjct: 109 PDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKEHEEQDKVRPKAKRKEEP 168
Query: 337 SSIFQRQRVDMLLSELTRHFP 357
SSIFQRQRVD LL +L + FP
Sbjct: 169 SSIFQRQRVDALLLDLRQKFP 189
>sp|O75586|MED6_HUMAN Mediator of RNA polymerase II transcription subunit 6 OS=Homo
sapiens GN=MED6 PE=1 SV=2
Length = 246
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 95/141 (67%)
Query: 217 VFHTRTMSFAIFHTMLYLCLWVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQA 276
V + ++ + M+ + +LH QEPIL++IRKQ R S Q P+ADYYIIAGV+YQA
Sbjct: 49 VVKMQRLTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQA 108
Query: 277 PDLASVISSRLLSTVHHLQSAFEEVNSLSKYNPNKGYSWDSKMLPQGKDTVKKEIIKEEP 336
PDL SVI+SR+L+ VH +QSAF+E S +Y+P+KGY W K + K KEEP
Sbjct: 109 PDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEP 168
Query: 337 SSIFQRQRVDMLLSELTRHFP 357
SSIFQRQRVD LL +L + FP
Sbjct: 169 SSIFQRQRVDALLLDLRQKFP 189
>sp|P40468|TAO3_YEAST Cell morphogenesis protein PAG1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=TAO3 PE=1 SV=1
Length = 2376
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 173/383 (45%), Gaps = 63/383 (16%)
Query: 536 PGEYVMRSLFADFTAQAEKKLDQVLAEPQ--EKPLSKVLQRGEDPVFDQLLIAFGSVAEH 593
P EY + LF F AE KL+ L + E P+ ++L G DP FD+++ + G +A+
Sbjct: 161 PSEYALHILFTKFIRYAENKLNMCLQQLDMAEPPIVEILGEGVDPSFDEIIKSLGHIAKK 220
Query: 594 CLPSILRALFAW--------------YERQMRPSVEAAANPHISSNNNNNNNNNNNNNNN 639
++ A+ W E+ ++ A+P + N + +++N
Sbjct: 221 KPKPVIDAMMFWRKTKSEAANSASEEMEKLLKEYEFEKAHPSQAHFLMNRRLSRSSSNTT 280
Query: 640 NNNNNNNNNNNNPVVIFLDKAYKGPSHVAKSGRKCFGTESGPSKILMLRPFRRVQE---- 695
+ +NNN NN P G K + S +K+ +++
Sbjct: 281 SKYKHNNNTNNLP------------------GMKRHVSSSFNNKVPLIKASSSNNSATSS 322
Query: 696 ----HTVLHEQYFRLRTKEAETILQERRDLAVEFVFCLILIEVLKQLPFHPGHDNLVTYI 751
++ L + + E L +R+ L ++ C +L E++KQ + D L +
Sbjct: 323 PSIANSQLKSLENTIEVAKEEAFLADRKSLISIYILCRVLNEIVKQASSNEEED-LSDKL 381
Query: 752 ETVAFKHFKYREGIQNDPNATNIHTVA----DLYAEVLGVLAQSRFQSVRKRFMSELKEL 807
E + F K DP + + + + +AE+LG +++ +F SV RF+++L+++
Sbjct: 382 EEIVFTQLK-----TTDPLSISTSLIKSSNWNSFAELLGSMSEKKFLSVSDRFIADLEKI 436
Query: 808 RFK-----EPNTHTTQSIISLLMGMKFFRVKMVPIEEFEASFQFMQECAQYFTDVKDKDV 862
EP+TH L++GM++ +++ P+E+FE S FM+ +++F ++ V
Sbjct: 437 PAYIPPELEPSTHL------LILGMRYLKLRNYPLEKFEESADFMKSLSKFFAKTENFPV 490
Query: 863 KHALAGLFVEILVPVAATVKNEV 885
A A + ++L+P+A ++ EV
Sbjct: 491 CLAYAEVTNQLLLPLAGSLTAEV 513
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 119/293 (40%), Gaps = 38/293 (12%)
Query: 1763 SPTGLYKLLVPLLRCDTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDRKTENMRR 1822
S ++K+++PLL +RDA++ L ++N K +E + V++ + + N
Sbjct: 1157 SAKSIFKMVLPLLNAKYIMIRDAIITGLSSMNINIFKAYVEAIDVFLVAWKEGSSNNQ-- 1214
Query: 1823 RRRRDALRLQLVRVFELIAEHGTFGACSPTMPGLLSPLAEYVDGARLCLELEADKQILRE 1882
+R+++ + +++ + +L L+E++ + LE ++ QI E
Sbjct: 1215 ------IRVEMFHILTILSPYLKSDMIFND-EWILRKLSEFLQKTKQFLEKDS-VQISYE 1266
Query: 1883 IKAHFCNFVCKMIHSFPLESRQTLLKRDL-----RRNLFSLFTSWAGQYGRNLNITQSYS 1937
++ ++ +I S+ + R+ L +L R + F+ W G YG I++
Sbjct: 1267 YQS-LRSYFAGLILSYYMAVREHPLIDELFPFQARASCFNFLKEWCG-YGEYEPISEERY 1324
Query: 1938 VSMPNPPASNPGPEALKTSEE----ELQLTSLSAMSAVLTCGPVFDPSTLLAEDGVLYP- 1992
M S A+ T E LQ+ L M V+ C DP T +D + P
Sbjct: 1325 AIMIKNTESGRDRTAITTGIEFQKNRLQMIVLETM--VVLCS---DPITQTLDDDLELPI 1379
Query: 1993 -----------WLDMLLASSEEKTYQIGCQTVILLLECNPDMGPLLDWVVDRC 2034
W++ L S +G + + LL+ N + L V +C
Sbjct: 1380 VISFDTEDLLAWIEALFDSDNTTVKNLGVRALENLLDKNRENFKLFRDVAFQC 1432
>sp|Q9N337|MED6_CAEEL Mediator of RNA polymerase II transcription subunit 6
OS=Caenorhabditis elegans GN=mdt-6 PE=1 SV=1
Length = 250
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
Query: 237 WVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSRLLSTVHHLQS 296
+VL +P L++I KQ R+++ +PIA YY+I G V+QAPD+ S++ SRLL + L++
Sbjct: 79 YVLWYSQPPLFIICKQRRNNVTNVSPIAYYYVINGSVHQAPDMYSLVQSRLLGALEPLRN 138
Query: 297 AFEEVNSLSKYNPNKGYSWDSKMLPQ-----GKDTVKKEIIKEEPSSIFQRQRVDMLLSE 351
AF EV + S+YN KGY W+ K P + +E E+ S+ FQ+ R MLL++
Sbjct: 139 AFGEVTNYSRYNTAKGYYWEFKNKPNVKKREEEKKEDEEEKLEDRSTNFQKTRTMMLLNQ 198
Query: 352 LTRHFPV 358
L P
Sbjct: 199 LFSEMPA 205
>sp|Q60WM1|MED6_CAEBR Mediator of RNA polymerase II transcription subunit 6
OS=Caenorhabditis briggsae GN=mdt-6 PE=3 SV=1
Length = 246
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 75/127 (59%), Gaps = 5/127 (3%)
Query: 237 WVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSRLLSTVHHLQS 296
+VL +P LY++ KQ R++ +PIA YY+I G V+QAPD+ +++ SRLL + L++
Sbjct: 79 YVLWYSQPPLYIVCKQRRNNATNVSPIAYYYVINGSVHQAPDMHTLVQSRLLGALEPLRN 138
Query: 297 AFEEVNSLSKYNPNKGYSWDSKMLPQ-----GKDTVKKEIIKEEPSSIFQRQRVDMLLSE 351
AF EV + S+YN KGY W+ K P + + E EE S+ FQ+ R MLL++
Sbjct: 139 AFGEVTNYSRYNTAKGYYWEFKNKPSMKKKEEEKKEEDERKLEERSTNFQKARTMMLLNQ 198
Query: 352 LTRHFPV 358
L P
Sbjct: 199 LFTEMPA 205
>sp|Q6C3T0|MED6_YARLI Mediator of RNA polymerase II transcription subunit 6 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MED6 PE=3 SV=1
Length = 227
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
Query: 238 VLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSRLLSTVHHLQSA 297
+ HV+EP L+VI+KQ+R + +QTTPI+ Y++I VY AP +A+++ SR+LST L+ A
Sbjct: 78 ITHVREPDLWVIKKQNRLNPQQTTPISTYFVINENVYMAPTVAAIMQSRVLSTSMFLKRA 137
Query: 298 FEEVNSLSKYNPNKGYSW-DSKMLPQGKDTVKKEIIKEE 335
EE L Y+P++GY++ DS++ G D + K E
Sbjct: 138 LEEAIELPSYSPSQGYTYEDSQLTTAGDDDSTPQASKAE 176
>sp|Q6CTT6|MED6_KLULA Mediator of RNA polymerase II transcription subunit 6
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MED6 PE=3
SV=1
Length = 268
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 51/75 (68%)
Query: 241 VQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSRLLSTVHHLQSAFEE 300
V+EP L++IRKQ R +TT + DYY+I VYQ+P + +I +RLLST +HL + +
Sbjct: 114 VREPDLWIIRKQQRDGPTKTTTLRDYYVIGSAVYQSPTVYKIIQNRLLSTNYHLSHSLSQ 173
Query: 301 VNSLSKYNPNKGYSW 315
+N L +++P +G S+
Sbjct: 174 LNKLVEFHPAQGASF 188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 780,049,105
Number of Sequences: 539616
Number of extensions: 34192887
Number of successful extensions: 317917
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 138894
Number of HSP's gapped (non-prelim): 73775
length of query: 2056
length of database: 191,569,459
effective HSP length: 133
effective length of query: 1923
effective length of database: 119,800,531
effective search space: 230376421113
effective search space used: 230376421113
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)