Query psy7128
Match_columns 2056
No_of_seqs 485 out of 554
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 18:52:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gwp_G Mediator of RNA polymer 100.0 1.4E-43 4.7E-48 408.3 2.5 202 149-366 7-251 (295)
2 4h61_A Mediator of RNA polymer 100.0 7.5E-42 2.6E-46 368.9 9.5 152 149-321 7-158 (175)
3 3tpo_A Importin subunit alpha- 55.4 80 0.0027 39.0 13.3 92 1958-2052 307-404 (529)
4 4hxt_A De novo protein OR329; 55.0 96 0.0033 33.1 12.3 197 1766-2025 44-248 (252)
5 3ul1_B Importin subunit alpha- 45.3 87 0.003 38.6 11.4 92 1958-2052 288-385 (510)
6 4fdd_A Transportin-1; heat rep 43.5 2.7E+02 0.0091 36.3 15.9 238 1764-2053 213-470 (852)
7 1b3u_A Protein (protein phosph 41.5 1.3E+02 0.0046 36.3 12.0 220 1765-2053 323-547 (588)
8 1b3u_A Protein (protein phosph 41.0 96 0.0033 37.5 10.7 218 1765-2053 86-309 (588)
9 2jdq_A Importin alpha-1 subuni 37.7 73 0.0025 37.3 8.7 230 1767-2054 108-347 (450)
10 4b8j_A Importin subunit alpha- 31.9 5.1E+02 0.017 31.4 15.0 223 1767-2054 161-400 (528)
11 4ady_A RPN2, 26S proteasome re 31.8 3.7E+02 0.013 36.7 14.5 249 1767-2054 393-676 (963)
12 2bpt_A Importin beta-1 subunit 30.8 5.8E+02 0.02 32.5 15.9 201 1764-2021 452-671 (861)
13 4fdd_A Transportin-1; heat rep 28.1 5.9E+02 0.02 33.1 15.5 87 1959-2052 336-427 (852)
14 1ibr_B P95, importin beta-1 su 27.5 7.8E+02 0.027 28.6 19.3 231 1765-2021 171-440 (462)
15 3ltm_A Alpha-REP4; protein eng 23.6 1.8E+02 0.006 30.8 7.9 41 1765-1805 18-59 (211)
No 1
>4gwp_G Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae S288C} PDB: 3rj1_G 4gwq_G
Probab=100.00 E-value=1.4e-43 Score=408.30 Aligned_cols=202 Identities=23% Similarity=0.239 Sum_probs=120.5
Q ss_pred CCceEeeccccccCCCccccccccCCCCCCCccccccccCccccccchhhHHHhHHhhcccc------------------
Q psy7128 149 DSSVTVLPWAGGQRGGRAATCGTAADSGNNVRPGEYVMRSLFADFTAQAEKKLDQVLAEPQV------------------ 210 (2056)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aleYFa~SPFYDrtSNNe~~~NqvL~~qQ~------------------ 210 (2056)
|..-|+-|.+++++| + ++ || +||||++||||||+||||++++|.+.++..
T Consensus 7 dEiqWr~P~wiq~~g-L--------~s-~N--VLdYFa~SPFyDktSNNevlrmQ~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (295)
T 4gwp_G 7 DELQWKSPEWIQVFG-L--------RT-EN--VLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNAAVNMTQNIMTLPDG 74 (295)
T ss_dssp SCCBCCSTTTTTCCS-S--------TH-HH--HHHHHHHSCCCSHHHHHHHHHHHCCSCCCCCSCC--------------
T ss_pred cceeecCHHHHHhcC-C--------Cc-ch--HHHHhhcCCccccccchHHHHHHHHhccccccccchhccccccccccc
Confidence 568899999999986 6 55 33 779999999999999977777776543211
Q ss_pred -----------------cccccccccccccchhhccccceeEEEEEEecCCceEEEEEeeecCCC--------ccceeee
Q psy7128 211 -----------------QIISKYVFHTRTMSFAIFHTMLYLCLWVLHVQEPILYVIRKQHRHSME--------QTTPIAD 265 (2056)
Q Consensus 211 -----------------q~~~~~~~~~~~e~~~~L~~M~GiEy~l~h~qEP~LfVIrKQ~R~sp~--------~v~pLa~ 265 (2056)
++..++..+..++ ++|++|+||||+|+|++||+|||||||+|++|+ +++||++
T Consensus 75 ~~~~~~~~~~~~~~~r~~i~~~~~~~~~~e--~~L~~m~GiEyvl~~~~eP~lwVIrKQ~R~s~~~~~~~~~~ev~pLa~ 152 (295)
T 4gwp_G 75 KNGNLEEEFAYVDPARRQILFKYPMYMQLE--EELMKLDGTEYVLSSVREPDFWVIRKQRRTNNSGVGSAKGPEIIPLQD 152 (295)
T ss_dssp --------CCCCCCHHHHHHCCCSTHHHHH--HHHHHHSCEEETTEEECSSEEEEEEETTEEEEEEEEECCCTTCCCEEE
T ss_pred cccchhhccccccchhhhhhhhcchhhhhH--HHHhhCCCeEEEEeecCCCceEEEEeeeccCCcccccccCcceeEeEE
Confidence 1122233333333 369999999999999999999999999999874 8999999
Q ss_pred EEEecCeEecCCChhHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCccccCCCCCCCCccchhhhhccCCCchHHHHHH
Q psy7128 266 YYIIAGVVYQAPDLASVISSRLLSTVHHLQSAFEEVNSLSKYNPNKGYSWDSKMLPQGKDTVKKEIIKEEPSSIFQRQRV 345 (2056)
Q Consensus 266 YYII~GnIYQAP~l~sVlsSRLlsa~~~L~~af~~~~s~~~f~Ps~Gy~w~~k~~~~~~~~~kk~~~~e~~~~~fQ~~Rv 345 (2056)
||||||+|||||++++||+|||++++++|+++|+.++++++|+|++||+|.++..+..+ ..+......+.+.+|+.++
T Consensus 153 YYIig~~IYqAPsl~~Vl~sRlls~~~~L~~a~~~~~~~~~f~Ps~G~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~ 230 (295)
T 4gwp_G 153 YYIIGANIYQSPTIFKIVQSRLMSTSYHLNSTLESLYDLIEFQPSQGVHYKVPTDTSTT--ATAATNGNNAGGGSNKSSV 230 (295)
T ss_dssp EEEEEETTEEECCCTTHHHHHHHHHHHHHHHHHHHHTCCC----------------------------------------
T ss_pred EEEECCEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHccCcccCCCCccccCCCCCccc--cccccCCCCCCccccccCC
Confidence 99999999999999999999999999999999999999999999999999876543322 2222334567889999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCC
Q psy7128 346 DMLLSELTRHFPVPPVPQAPQ 366 (2056)
Q Consensus 346 D~LL~~L~~kfP~~~~~~~~~ 366 (2056)
+.....+.+++|.+.++....
T Consensus 231 ~~~~~~~~~~~p~~~~~~~~~ 251 (295)
T 4gwp_G 231 RPTGGANMATVPSTTNVNMTV 251 (295)
T ss_dssp ---------------------
T ss_pred CCccccccccCCCCCCccccc
Confidence 999999999999876654433
No 2
>4h61_A Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 2.70A {Schizosaccharomyces pombe} PDB: 4h63_F
Probab=100.00 E-value=7.5e-42 Score=368.87 Aligned_cols=152 Identities=21% Similarity=0.331 Sum_probs=115.3
Q ss_pred CCceEeeccccccCCCccccccccCCCCCCCccccccccCccccccchhhHHHhHHhhcccccccccccccccccchhhc
Q psy7128 149 DSSVTVLPWAGGQRGGRAATCGTAADSGNNVRPGEYVMRSLFADFTAQAEKKLDQVLAEPQVQIISKYVFHTRTMSFAIF 228 (2056)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aleYFa~SPFYDrtSNNe~~~NqvL~~qQ~q~~~~~~~~~~~e~~~~L 228 (2056)
|..-|+-|-+++++||+ +.-+|||||++||||||+||||++++|.+..+. + ...++ ++|
T Consensus 7 ~~i~wr~p~wi~~~~~L-----------~~~nvLdYF~~SPFyD~tsnNe~lrmQ~~~~~~-------~-~~~~e--~~L 65 (175)
T 4h61_A 7 TSIQWRMPEWVQSMGGL-----------RTENVLEYFSQSPFYSHKSNNEMLKMQSQFNAL-------D-LGDLN--SQL 65 (175)
T ss_dssp GGCCBCCHHHHHHTTSC-----------CTTTHHHHHHTSTTCCTTSHHHHHHHHHHHTTC-------C-CCCHH--HHH
T ss_pred cccEEcCHHHHHhcCCC-----------CccHHHHHhhcCCcccccchHHHHHHhhccCcc-------c-hHHHH--HHH
Confidence 35679999999999998 444568999999999999996666665543211 1 11223 469
Q ss_pred cccceeEEEEEEecCCceEEEEEeeecCCCccceeeeEEEecCeEecCCChhHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy7128 229 HTMLYLCLWVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSRLLSTVHHLQSAFEEVNSLSKYN 308 (2056)
Q Consensus 229 ~~M~GiEy~l~h~qEP~LfVIrKQ~R~sp~~v~pLa~YYII~GnIYQAP~l~sVlsSRLlsa~~~L~~af~~~~s~~~f~ 308 (2056)
++|+|+||+|+|++||+|||||||+|++|++++|||+||||||+|||||++++||++||++++++|++||+.++++++|+
T Consensus 66 ~~m~GiEy~l~~~~~p~lfvI~Kq~R~~~~~~~~la~YyIi~g~IYqAP~l~~vl~sRl~s~~~~L~~a~~~~~~~~~~~ 145 (175)
T 4h61_A 66 KRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNAYTLLATRMLNATYCFQKALTKIEKFPQYN 145 (175)
T ss_dssp HTCCEEEEEEEEEETTTEEEEEEEEECSSSCEEEEEEEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHTTCC------
T ss_pred hcCCCceEEEeecCCCceEEEEEEEEcCCCcceEEEEEEEECCEEccCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCC
Q psy7128 309 PNKGYSWDSKMLP 321 (2056)
Q Consensus 309 Ps~Gy~w~~k~~~ 321 (2056)
|++||+|+++..+
T Consensus 146 ps~Gy~~~~~~~~ 158 (175)
T 4h61_A 146 PQEGYTYPKLSND 158 (175)
T ss_dssp -------------
T ss_pred CcCCeeCCCCCcc
Confidence 9999999887653
No 3
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=55.42 E-value=80 Score=38.98 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhccCCCcCCCcccCCCcchHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCch------hHHHHH
Q psy7128 1958 EELQLTSLSAMSAVLTCGPVFDPSTLLAEDGVLYPWLDMLLASSEEKTYQIGCQTVILLLECNPDMGP------LLDWVV 2031 (2056)
Q Consensus 1958 ~~Lq~aAL~AMAAvLC~GPifd~~~~~~edG~ll~WID~If~S~s~r~~~igr~AL~nLL~~N~d~~~------LLe~~I 2031 (2056)
..++..|+.|+.. |++|.-.... .+.+.|. +..|-.++.++++.+..-|..||.||..+|+++.. +++..|
T Consensus 307 ~~v~~~a~~aL~n-l~~~~~~~~~-~i~~~g~-l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv 383 (529)
T 3tpo_A 307 LPIVTPALRAIGN-IVTGTDEQTQ-KVIDAGA-LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 383 (529)
T ss_dssp HHHHHHHHHHHHH-HTTSCHHHHH-HHHHTTG-GGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHH-HHccchHHHH-HHhhccc-HHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHH
Confidence 4678889999988 6665432211 1223343 34556788899999999999999999888876433 556667
Q ss_pred HhhcCCCccchhhHHHHHHHH
Q psy7128 2032 DRCYTASVQVADGCFLALATL 2052 (2056)
Q Consensus 2032 drCYt~~~~vA~GcF~aLa~V 2052 (2056)
.....++..+-...-.||+++
T Consensus 384 ~lL~~~~~~v~~~A~~aL~nl 404 (529)
T 3tpo_A 384 GVLSKADFKTQKAAAWAITNY 404 (529)
T ss_dssp HHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHH
Confidence 766666665544444455544
No 4
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=55.05 E-value=96 Score=33.06 Aligned_cols=197 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHhcccccCChhhHHHHHHHhcCCC---HHHHHHHHHH--HHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHHh
Q psy7128 1766 GLYKLLVPLLRCDTTDVRDAVVHALGNIN---SEALKDLMEE--LSVYIREAVDRKTENMRRRRRRDALRLQLVRVFELI 1840 (2056)
Q Consensus 1766 ~LFklvvPlLr~e~~~IRdAvV~ALGsIN---~~ayr~LLEE--L~~~v~EA~dRk~sn~RRrrRrD~LRleI~hV~elt 1840 (2056)
.....++.+|+.+...+|..++.+||.+- ...-+.+++. +..+++ -=+...+.+|.....++..+
T Consensus 44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~----------ll~~~~~~v~~~a~~~L~~l 113 (252)
T 4hxt_A 44 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK----------LLTSTDSEVQKEAARALANI 113 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH----------HTTCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHH----------HHcCCCHHHHHHHHHHHHHH
Q ss_pred h-ccCccCCCCCCCcchhHHHHHH--HHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhcCCCccccccCCHHHHHHHHH
Q psy7128 1841 A-EHGTFGACSPTMPGLLSPLAEY--VDGARLCLELEADKQILREIKAHFCNFVCKMIHSFPLESRQTLLKRDLRRNLFS 1917 (2056)
Q Consensus 1841 A-e~gvf~~~~~~~~~l~~~lvey--Ikd~R~fL~~E~d~D~lq~LR~hFc~lve~Li~~~~~~~~~~~f~~elRksLF~ 1917 (2056)
+ .. +.....+++- +.-+..+|..+. ..+|..-|..+.++..+ .............=..|..
T Consensus 114 ~~~~----------~~~~~~~~~~~~i~~L~~~l~~~~-----~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ 177 (252)
T 4hxt_A 114 ASGP----------DEAIKAIVDAGGVEVLVKLLTSTD-----SEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVK 177 (252)
T ss_dssp TTSC----------HHHHHHHHHTTHHHHHHHHTTCSC-----HHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHH
T ss_pred HcCC----------HHHHHHHHHCCCHHHHHHHHcCCC-----HHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHH
Q ss_pred HHHhhhcCCCCCccccccccccCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHhccCCCcCCCcccCCCcchHHHHHHH
Q psy7128 1918 LFTSWAGQYGRNLNITQSYSVSMPNPPASNPGPEALKTSEEELQLTSLSAMSAVLTCGPVFDPSTLLAEDGVLYPWLDML 1997 (2056)
Q Consensus 1918 Lf~~WcG~~g~~~~~~~rre~~mr~~~~s~r~~aa~e~e~~~Lq~aAL~AMAAvLC~GPifd~~~~~~edG~ll~WID~I 1997 (2056)
++. ++. ..++..|+.|++. ||.|.--... .+.+.| ++..|=.+
T Consensus 178 ll~--~~~--------------------------------~~v~~~a~~~L~~-l~~~~~~~~~-~l~~~~-~i~~L~~l 220 (252)
T 4hxt_A 178 LLT--STD--------------------------------SEVQKEAARALAN-IASGPTSAIK-AIVDAG-GVEVLQKL 220 (252)
T ss_dssp HTT--CSC--------------------------------HHHHHHHHHHHHH-HTTSBHHHHH-HHHHTT-HHHHHHHG
T ss_pred HHC--CCC--------------------------------HHHHHHHHHHHHH-HHcCCHHHHH-HHHHCC-CHHHHHHH
Q ss_pred hcCCchhHHHHHHHHHHHHHHhCCCCch
Q psy7128 1998 LASSEEKTYQIGCQTVILLLECNPDMGP 2025 (2056)
Q Consensus 1998 f~S~s~r~~~igr~AL~nLL~~N~d~~~ 2025 (2056)
+.++++++...|..||.||..+.+...+
T Consensus 221 l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 248 (252)
T 4hxt_A 221 LTSTDSEVQKEAQRALENIKSGGWLEHH 248 (252)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHTCBCCC-
T ss_pred HCCCcHHHHHHHHHHHHHHHcCCCcccc
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=45.25 E-value=87 Score=38.56 Aligned_cols=92 Identities=13% Similarity=0.131 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhccCCCcCCCcccCCCcchHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCch------hHHHHH
Q psy7128 1958 EELQLTSLSAMSAVLTCGPVFDPSTLLAEDGVLYPWLDMLLASSEEKTYQIGCQTVILLLECNPDMGP------LLDWVV 2031 (2056)
Q Consensus 1958 ~~Lq~aAL~AMAAvLC~GPifd~~~~~~edG~ll~WID~If~S~s~r~~~igr~AL~nLL~~N~d~~~------LLe~~I 2031 (2056)
..++..|+.|+.. |++|.-.... .+.+.|. +.-|-.++.++++.+..-+..||.||...|+++.. +++.+|
T Consensus 288 ~~v~~~al~aL~n-l~~~~~~~~~-~i~~~g~-l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv 364 (510)
T 3ul1_B 288 LPIVTPALRAIGN-IVTGTDEQTQ-KVIDAGA-LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364 (510)
T ss_dssp HHHHHHHHHHHHH-HTTSCHHHHH-HHHHTTG-GGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred hhhhhHHHHHHHH-hhcCCHHHHH-HHhhccc-hHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHH
Confidence 4678889999988 6665422111 1222232 33445677889999999999999999887776432 556677
Q ss_pred HhhcCCCccchhhHHHHHHHH
Q psy7128 2032 DRCYTASVQVADGCFLALATL 2052 (2056)
Q Consensus 2032 drCYt~~~~vA~GcF~aLa~V 2052 (2056)
+....++..+..-.-.||+++
T Consensus 365 ~lL~~~~~~v~~~Aa~aL~Nl 385 (510)
T 3ul1_B 365 GVLSKADFKTQKEAAWAITNY 385 (510)
T ss_dssp HHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHH
Confidence 777777766554444455544
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=43.48 E-value=2.7e+02 Score=36.26 Aligned_cols=238 Identities=16% Similarity=0.178 Sum_probs=124.3
Q ss_pred hHHHHHHHhcccccCChhhHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHHh
Q psy7128 1764 PTGLYKLLVPLLRCDTTDVRDAVVHALGNINS---EALKDLMEELSVYIREAVDRKTENMRRRRRRDALRLQLVRVFELI 1840 (2056)
Q Consensus 1764 ar~LFklvvPlLr~e~~~IRdAvV~ALGsIN~---~ayr~LLEEL~~~v~EA~dRk~sn~RRrrRrD~LRleI~hV~elt 1840 (2056)
...++..++.++..+.+.+|.+|.-+|+.+=. ..++..++.+-+++-+.... .-+.+|.+....+..+
T Consensus 213 ~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~---------~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 213 IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD---------QDENVALEACEFWLTL 283 (852)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC---------SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC---------CcHHHHHHHHHHHHHH
Confidence 35677888888889999999999999986533 23333334443333333211 1356777777666666
Q ss_pred hccCccCCC-CCCCcchhHHHHHHH---HHHHHHhcchhhhHH-------HHHHHHHHHHHHHHHHhcCCCccccccCCH
Q psy7128 1841 AEHGTFGAC-SPTMPGLLSPLAEYV---DGARLCLELEADKQI-------LREIKAHFCNFVCKMIHSFPLESRQTLLKR 1909 (2056)
Q Consensus 1841 Ae~gvf~~~-~~~~~~l~~~lveyI---kd~R~fL~~E~d~D~-------lq~LR~hFc~lve~Li~~~~~~~~~~~f~~ 1909 (2056)
++......- ......+...+++.+ ++--.+++.+.+.|+ --.+|..-+..+..+...++..
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~-------- 355 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-------- 355 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG--------
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH--------
Confidence 653111000 000011222222211 111111122211110 1135666666666666555311
Q ss_pred HHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHhccCCCcCCCcccCCCcc
Q psy7128 1910 DLRRNLFSLFTSWAGQYGRNLNITQSYSVSMPNPPASNPGPEALKTSEEELQLTSLSAMSAVLTCGPVFDPSTLLAEDGV 1989 (2056)
Q Consensus 1910 elRksLF~Lf~~WcG~~g~~~~~~~rre~~mr~~~~s~r~~aa~e~e~~~Lq~aAL~AMAAvLC~GPifd~~~~~~edG~ 1989 (2056)
.-..++.++.+.... ..-..+.+|+.|+++ ++.|.--. ....-..
T Consensus 356 -~~~~l~~~l~~~l~~------------------------------~~~~~R~aa~~alg~-i~~~~~~~---~~~~l~~ 400 (852)
T 4fdd_A 356 -LLPHILPLLKELLFH------------------------------HEWVVKESGILVLGA-IAEGCMQG---MIPYLPE 400 (852)
T ss_dssp -GHHHHHHHHHHHHTC------------------------------SSHHHHHHHHHHHHH-TTTTTHHH---HGGGHHH
T ss_pred -HHHHHHHHHHHHhcC------------------------------CCHHHHHHHHHHHHH-HHhcchHH---HHHHHHH
Confidence 122344444444321 113456789999988 65554210 1111133
Q ss_pred hHHHHHHHhcCCchhHHHHHHHHHHHHHHhCC------CCchhHHHHHHhhcCCCccchhhHHHHHHHHh
Q psy7128 1990 LYPWLDMLLASSEEKTYQIGCQTVILLLECNP------DMGPLLDWVVDRCYTASVQVADGCFLALATLF 2053 (2056)
Q Consensus 1990 ll~WID~If~S~s~r~~~igr~AL~nLL~~N~------d~~~LLe~~IdrCYt~~~~vA~GcF~aLa~Vf 2053 (2056)
++.-|=..+..++.+++..+..||.++-.... -...+++..+...-..+..|......+|.++.
T Consensus 401 ~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 401 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE 470 (852)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 56666677788888999999999988776432 23345555555444456677777777777654
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=41.51 E-value=1.3e+02 Score=36.29 Aligned_cols=220 Identities=12% Similarity=0.136 Sum_probs=106.8
Q ss_pred HHHHHHHhcccccCChhhHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHHhhcc
Q psy7128 1765 TGLYKLLVPLLRCDTTDVRDAVVHALGNINSEALKD-LMEELSVYIREAVDRKTENMRRRRRRDALRLQLVRVFELIAEH 1843 (2056)
Q Consensus 1765 r~LFklvvPlLr~e~~~IRdAvV~ALGsIN~~ayr~-LLEEL~~~v~EA~dRk~sn~RRrrRrD~LRleI~hV~eltAe~ 1843 (2056)
..++..+..++...+..+|.+++.+||.+-...-+. .++.|.+.+.+.+... .+.+|.....-+..+...
T Consensus 323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~---------~~~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE---------CPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCS---------CHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC---------chHHHHHHHHHHHHHHHh
Confidence 346667777788889999999999999985433222 2345555555444211 134555544433333331
Q ss_pred CccCCCCCCCcchhHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHhhh
Q psy7128 1844 GTFGACSPTMPGLLSPLAEYVDGARLCLELEADKQILREIKAHFCNFVCKMIHSFPLESRQTLLKRDLRRNLFSLFTSWA 1923 (2056)
Q Consensus 1844 gvf~~~~~~~~~l~~~lveyIkd~R~fL~~E~d~D~lq~LR~hFc~lve~Li~~~~~~~~~~~f~~elRksLF~Lf~~Wc 1923 (2056)
++. +.+...++..+ ..++ .|.--++|...+..+..+.+.+..+ .+. ..+..++..|-
T Consensus 394 --~~~-----~~~~~~~lp~l---~~~~-----~d~~~~vr~~~~~~l~~l~~~~~~~----~~~----~~l~~~l~~~l 450 (588)
T 1b3u_A 394 --IGI-----RQLSQSLLPAI---VELA-----EDAKWRVRLAIIEYMPLLAGQLGVE----FFD----EKLNSLCMAWL 450 (588)
T ss_dssp --SCH-----HHHHHHHHHHH---HHHH-----TCSSHHHHHHHHHHHHHHHHHHCGG----GCC----HHHHHHHHHGG
T ss_pred --cCH-----HHHHHHHHHHH---HHHh-----cCCCchHHHHHHHHHHHHHHHcCHH----HHH----HHHHHHHHHHh
Confidence 111 11112222211 1122 1211257888888888887765432 122 23445555554
Q ss_pred cCCCCCccccccccccCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHhc-cCCCcCCCcccCCCcchHHHHHHHhcCCc
Q psy7128 1924 GQYGRNLNITQSYSVSMPNPPASNPGPEALKTSEEELQLTSLSAMSAVLT-CGPVFDPSTLLAEDGVLYPWLDMLLASSE 2002 (2056)
Q Consensus 1924 G~~g~~~~~~~rre~~mr~~~~s~r~~aa~e~e~~~Lq~aAL~AMAAvLC-~GPifd~~~~~~edG~ll~WID~If~S~s 2002 (2056)
.. ....++.+|..+++.++. .|+-+. -..++.-|-.++..++
T Consensus 451 ~d------------------------------~~~~Vr~~a~~~l~~l~~~~~~~~~-------~~~llp~l~~~~~~~~ 493 (588)
T 1b3u_A 451 VD------------------------------HVYAIREAATSNLKKLVEKFGKEWA-------HATIIPKVLAMSGDPN 493 (588)
T ss_dssp GC------------------------------SSHHHHHHHHHHHHHHHHHHCHHHH-------HHHTHHHHHHTTTCSC
T ss_pred cC------------------------------CcHHHHHHHHHHHHHHHHHhCchhH-------HHHHHHHHHHHhhCCC
Confidence 32 114566677777766322 132110 0123344444555556
Q ss_pred hhHHHHHHHHHHHHHHhCCC---CchhHHHHHHhhcCCCccchhhHHHHHHHHh
Q psy7128 2003 EKTYQIGCQTVILLLECNPD---MGPLLDWVVDRCYTASVQVADGCFLALATLF 2053 (2056)
Q Consensus 2003 ~r~~~igr~AL~nLL~~N~d---~~~LLe~~IdrCYt~~~~vA~GcF~aLa~Vf 2053 (2056)
..++..+-.++..|...-.. .+.+++..+...-..++.|......+|..++
T Consensus 494 ~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 547 (588)
T 1b3u_A 494 YLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHH
Confidence 66666666666665543110 1234444443332333445545555554443
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=41.00 E-value=96 Score=37.54 Aligned_cols=218 Identities=13% Similarity=0.163 Sum_probs=122.2
Q ss_pred HHHHHHHhcccccCChhhHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHHhhcc
Q psy7128 1765 TGLYKLLVPLLRCDTTDVRDAVVHALGNINSEAL-KDLMEELSVYIREAVDRKTENMRRRRRRDALRLQLVRVFELIAEH 1843 (2056)
Q Consensus 1765 r~LFklvvPlLr~e~~~IRdAvV~ALGsIN~~ay-r~LLEEL~~~v~EA~dRk~sn~RRrrRrD~LRleI~hV~eltAe~ 1843 (2056)
..|+..+..++..+...+|++++.+|+.+-...- ..+.+.+.+++.+..+- + -...|.....++..++..
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~--~-------~~~~R~~a~~~l~~~~~~ 156 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG--D-------WFTSRTSACGLFSVCYPR 156 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTC--S-------SHHHHHHHGGGHHHHTTT
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcC--C-------CcHHHHHHHHHHHHHHHh
Confidence 4467777777788999999999999987532211 12223345555544321 1 123455556666666553
Q ss_pred CccCCCCCCCcchhHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHhhh
Q psy7128 1844 GTFGACSPTMPGLLSPLAEYVDGARLCLELEADKQILREIKAHFCNFVCKMIHSFPLESRQTLLKRDLRRNLFSLFTSWA 1923 (2056)
Q Consensus 1844 gvf~~~~~~~~~l~~~lveyIkd~R~fL~~E~d~D~lq~LR~hFc~lve~Li~~~~~~~~~~~f~~elRksLF~Lf~~Wc 1923 (2056)
+. +.....++.++..+ +. |.+ ...|..-|..+..+.+.++.+. .-..++.++..-+
T Consensus 157 --~~------~~~~~~l~~~l~~l---~~---d~~--~~VR~~a~~~l~~l~~~~~~~~--------~~~~l~~~l~~~~ 212 (588)
T 1b3u_A 157 --VS------SAVKAELRQYFRNL---CS---DDT--PMVRRAAASKLGEFAKVLELDN--------VKSEIIPMFSNLA 212 (588)
T ss_dssp --SC------HHHHHHHHHHHHHH---HT---CSC--HHHHHHHHHHHHHHHHTSCHHH--------HHHTHHHHHHHHH
T ss_pred --cC------HHHHHHHHHHHHHH---hC---CCC--HHHHHHHHHHHHHHHHHhcHHh--------HHHHHHHHHHHHh
Confidence 11 11223333333221 11 111 2567777777777776554221 1122333333322
Q ss_pred cCCCCCccccccccccCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHhcc--CCCcCCCcccCCCcchHHHHHHHhcCC
Q psy7128 1924 GQYGRNLNITQSYSVSMPNPPASNPGPEALKTSEEELQLTSLSAMSAVLTC--GPVFDPSTLLAEDGVLYPWLDMLLASS 2001 (2056)
Q Consensus 1924 G~~g~~~~~~~rre~~mr~~~~s~r~~aa~e~e~~~Lq~aAL~AMAAvLC~--GPifd~~~~~~edG~ll~WID~If~S~ 2001 (2056)
.. +...++.+|+.+++. ++. |+- .....++..+..++..+
T Consensus 213 ~d------------------------------~~~~vr~~a~~~l~~-l~~~~~~~-------~~~~~~~~~l~~~~~d~ 254 (588)
T 1b3u_A 213 SD------------------------------EQDSVRLLAVEACVN-IAQLLPQE-------DLEALVMPTLRQAAEDK 254 (588)
T ss_dssp TC------------------------------SCHHHHTTHHHHHHH-HHHHSCHH-------HHHHHTHHHHHHHHTCS
T ss_pred cC------------------------------CcHHHHHHHHHHHHH-HHHhCCHH-------HHHHHHHHHHHHHccCC
Confidence 21 113566677777766 321 210 00134677788888888
Q ss_pred chhHHHHHHHHHHHHHHhCCC---CchhHHHHHHhhcCCCccchhhHHHHHHHHh
Q psy7128 2002 EEKTYQIGCQTVILLLECNPD---MGPLLDWVVDRCYTASVQVADGCFLALATLF 2053 (2056)
Q Consensus 2002 s~r~~~igr~AL~nLL~~N~d---~~~LLe~~IdrCYt~~~~vA~GcF~aLa~Vf 2053 (2056)
+.+++.-+.++|..+...-.+ ...+++.++..|-..+..|..++..+|..+.
T Consensus 255 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 309 (588)
T 1b3u_A 255 SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC 309 (588)
T ss_dssp SHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 889999999999888874321 1347777777777777778777777777654
No 9
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=37.66 E-value=73 Score=37.27 Aligned_cols=230 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHhcccccCChhhHHHHHHHhcCCC---HHHHHHHHH-HHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHHhhc
Q psy7128 1767 LYKLLVPLLRCDTTDVRDAVVHALGNIN---SEALKDLME-ELSVYIREAVDRKTENMRRRRRRDALRLQLVRVFELIAE 1842 (2056)
Q Consensus 1767 LFklvvPlLr~e~~~IRdAvV~ALGsIN---~~ayr~LLE-EL~~~v~EA~dRk~sn~RRrrRrD~LRleI~hV~eltAe 1842 (2056)
+...++.+|+++.+.+|+.++.+||.+- +..-..+++ .+-+.+-+.+.... .+.+|...+..+..++.
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--------~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN--------RLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC--------CHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC--------CHHHHHHHHHHHHHHhC
Q ss_pred cCccCCCCCCCcchhHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHhh
Q psy7128 1843 HGTFGACSPTMPGLLSPLAEYVDGARLCLELEADKQILREIKAHFCNFVCKMIHSFPLESRQTLLKRDLRRNLFSLFTSW 1922 (2056)
Q Consensus 1843 ~gvf~~~~~~~~~l~~~lveyIkd~R~fL~~E~d~D~lq~LR~hFc~lve~Li~~~~~~~~~~~f~~elRksLF~Lf~~W 1922 (2056)
...-.........+.+.|++.+++-- ..+|..-|..+.++....+ +..........=..|..++.
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~~~~------------~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~-- 244 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLFVSD------------TDVLADACWALSYLSDGPN-DKIQAVIDAGVCRRLVELLM-- 244 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTTCCC------------HHHHHHHHHHHHHHTSSSH-HHHHHHHHTTTHHHHHHHTT--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccCC------------HHHHHHHHHHHHHHHCCCc-HHHHHHHHcCcHHHHHHHHC--
Q ss_pred hcCCCCCccccccccccCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHhccCCCcCCCcccCCCcchHHHHHHHhcCCc
Q psy7128 1923 AGQYGRNLNITQSYSVSMPNPPASNPGPEALKTSEEELQLTSLSAMSAVLTCGPVFDPSTLLAEDGVLYPWLDMLLASSE 2002 (2056)
Q Consensus 1923 cG~~g~~~~~~~rre~~mr~~~~s~r~~aa~e~e~~~Lq~aAL~AMAAvLC~GPifd~~~~~~edG~ll~WID~If~S~s 2002 (2056)
.+. ..++.+|+.|++. |+.|.-.......... ++..|=.++.+++
T Consensus 245 ~~~--------------------------------~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~--~l~~L~~ll~~~~ 289 (450)
T 2jdq_A 245 HND--------------------------------YKVVSPALRAVGN-IVTGDDIQTQVILNCS--ALQSLLHLLSSPK 289 (450)
T ss_dssp CSC--------------------------------HHHHHHHHHHHHH-HTTSCHHHHHHHHTTT--HHHHHHHHTTCSS
T ss_pred CCc--------------------------------hhHHHHHHHHHHH-HhhCChHHHHHHHHCc--cHHHHHHHHcCCC
Q ss_pred hhHHHHHHHHHHHHHHhCCCC------chhHHHHHHhhcCCCccchhhHHHHHHHHhh
Q psy7128 2003 EKTYQIGCQTVILLLECNPDM------GPLLDWVVDRCYTASVQVADGCFLALATLFS 2054 (2056)
Q Consensus 2003 ~r~~~igr~AL~nLL~~N~d~------~~LLe~~IdrCYt~~~~vA~GcF~aLa~Vfs 2054 (2056)
+.++.-+..||.||...+++. ..+++.+++..-..+..+......+|+++..
T Consensus 290 ~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 290 ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=31.90 E-value=5.1e+02 Score=31.37 Aligned_cols=223 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHhcccccCChhhHHHHHHHhcCC--CHHHHHHHHHH---HHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHHhh
Q psy7128 1767 LYKLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDLMEE---LSVYIREAVDRKTENMRRRRRRDALRLQLVRVFELIA 1841 (2056)
Q Consensus 1767 LFklvvPlLr~e~~~IRdAvV~ALGsI--N~~ayr~LLEE---L~~~v~EA~dRk~sn~RRrrRrD~LRleI~hV~eltA 1841 (2056)
....++.+|+.++..+|+.|+.|||.+ +...++..+-+ +.++++-. ++.....+|...+.++..++
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL---------~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL---------NEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTC---------CTTCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHH---------hcCCCHHHHHHHHHHHHHHH
Q ss_pred ccCccCCCCCCCcchhHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhcCCCccccccCCHHHHHHHHH----
Q psy7128 1842 EHGTFGACSPTMPGLLSPLAEYVDGARLCLELEADKQILREIKAHFCNFVCKMIHSFPLESRQTLLKRDLRRNLFS---- 1917 (2056)
Q Consensus 1842 e~gvf~~~~~~~~~l~~~lveyIkd~R~fL~~E~d~D~lq~LR~hFc~lve~Li~~~~~~~~~~~f~~elRksLF~---- 1917 (2056)
...-... .......+.-+-..|..+. ..+|..-|..+..+..+ +.+....+..
T Consensus 232 ~~~~~~~--------~~~~~~~l~~L~~lL~~~~-----~~v~~~a~~aL~~l~~~----------~~~~~~~~~~~g~v 288 (528)
T 4b8j_A 232 RGKPQPS--------FEQTRPALPALARLIHSND-----EEVLTDACWALSYLSDG----------TNDKIQAVIEAGVC 288 (528)
T ss_dssp CSSSCCC--------HHHHTTHHHHHHHHTTCCC-----HHHHHHHHHHHHHHTSS----------CHHHHHHHHHTTCH
T ss_pred cCCCCCc--------HHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHcC----------CHHHHHHHHHcCHH
Q ss_pred -HHHhhhcCCCCCccccccccccCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHhccCCCcCCCcccCCCcchHHHHHH
Q psy7128 1918 -LFTSWAGQYGRNLNITQSYSVSMPNPPASNPGPEALKTSEEELQLTSLSAMSAVLTCGPVFDPSTLLAEDGVLYPWLDM 1996 (2056)
Q Consensus 1918 -Lf~~WcG~~g~~~~~~~rre~~mr~~~~s~r~~aa~e~e~~~Lq~aAL~AMAAvLC~GPifd~~~~~~edG~ll~WID~ 1996 (2056)
.+...-.. ....++..|+.+++. ||.|.-... -..-+.-++..|-.
T Consensus 289 ~~Lv~lL~~------------------------------~~~~v~~~a~~~L~n-l~~~~~~~~--~~~~~~~~l~~L~~ 335 (528)
T 4b8j_A 289 PRLVELLLH------------------------------PSPSVLIPALRTVGN-IVTGDDAQT--QCIIDHQALPCLLS 335 (528)
T ss_dssp HHHHHHTTC------------------------------SCHHHHHHHHHHHHH-HTTSCHHHH--HHHHTTTHHHHHHH
T ss_pred HHHHHHHcC------------------------------CChhHHHHHHHHHHH-HHcCCHHHH--HHHHHhhhHHHHHH
Q ss_pred HhcCC-chhHHHHHHHHHHHHHHhCCCCc------hhHHHHHHhhcCCCccchhhHHHHHHHHhh
Q psy7128 1997 LLASS-EEKTYQIGCQTVILLLECNPDMG------PLLDWVVDRCYTASVQVADGCFLALATLFS 2054 (2056)
Q Consensus 1997 If~S~-s~r~~~igr~AL~nLL~~N~d~~------~LLe~~IdrCYt~~~~vA~GcF~aLa~Vfs 2054 (2056)
++.++ ++.+..-|..||.||...++++. .+++..++..-.++..+-.....+|+++..
T Consensus 336 lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~ 400 (528)
T 4b8j_A 336 LLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATS 400 (528)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
No 11
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=31.79 E-value=3.7e+02 Score=36.71 Aligned_cols=249 Identities=15% Similarity=0.088 Sum_probs=130.9
Q ss_pred HHHHHhcccc---cCChhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH----hhhccchhhh------------cc--
Q psy7128 1767 LYKLLVPLLR---CDTTDVRDAVVHALGNINSEALKDLMEELSVYIREAV----DRKTENMRRR------------RR-- 1825 (2056)
Q Consensus 1767 LFklvvPlLr---~e~~~IRdAvV~ALGsIN~~ayr~LLEEL~~~v~EA~----dRk~sn~RRr------------rR-- 1825 (2056)
-.+++-|+|. ++.+.++-.|.+|||-|+....++.++.|..++.... ++..+..|.. .+
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee 472 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIE 472 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHH
Confidence 4788888887 7788999999999999999887777777777775321 0000101100 01
Q ss_pred -hhhHHHHHH----HHHHHhhcc-Cc-cCCCCCCCcchhHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhcC
Q psy7128 1826 -RDALRLQLV----RVFELIAEH-GT-FGACSPTMPGLLSPLAEYVDGARLCLELEADKQILREIKAHFCNFVCKMIHSF 1898 (2056)
Q Consensus 1826 -rD~LRleI~----hV~eltAe~-gv-f~~~~~~~~~l~~~lveyIkd~R~fL~~E~d~D~lq~LR~hFc~lve~Li~~~ 1898 (2056)
-+.|.-.+. -+-+..+.. |+ |.. .++.-. ++.+.+++.. .+.| ++|+..+.=+..++-+-
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vG--Tgn~~a-------i~~LL~~~~e-~~~e---~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLG--TGKPEA-------IHDMFTYSQE-TQHG---NITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTT--CCCHHH-------HHHHHHHHHH-CSCH---HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcc--cCCHHH-------HHHHHHHHhc-cCcH---HHHHHHHHHHHhhhCCC
Confidence 122211111 000111111 11 110 011222 2333333321 1233 56666554444443332
Q ss_pred CCccc------cccCCHHHHHH-HHHHHHhhhcCCCCCccccccccccCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHH
Q psy7128 1899 PLESR------QTLLKRDLRRN-LFSLFTSWAGQYGRNLNITQSYSVSMPNPPASNPGPEALKTSEEELQLTSLSAMSAV 1971 (2056)
Q Consensus 1899 ~~~~~------~~~f~~elRks-LF~Lf~~WcG~~g~~~~~~~rre~~mr~~~~s~r~~aa~e~e~~~Lq~aAL~AMAAv 1971 (2056)
+...+ ..--..-.|.. .+.+-..|||. |.... +++-- ....+....+++.+|+.|++-|
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGT-Gn~~a-Iq~LL------------~~~~~d~~d~VRraAViaLGlI 605 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGT-GNNSA-VKRLL------------HVAVSDSNDDVRRAAVIALGFV 605 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS-CCHHH-HHHHH------------HHHHHCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC-CCHHH-HHHHH------------HHhccCCcHHHHHHHHHHHHhh
Confidence 21111 11123445554 57777889986 43221 11000 0011123357899999999764
Q ss_pred hccCCCcCCCcccCCCcchHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCchhHHHHHHhhcCCCccchhhHHHHHHH
Q psy7128 1972 LTCGPVFDPSTLLAEDGVLYPWLDMLLASSEEKTYQIGCQTVILLLECNPDMGPLLDWVVDRCYTASVQVADGCFLALAT 2051 (2056)
Q Consensus 1972 LC~GPifd~~~~~~edG~ll~WID~If~S~s~r~~~igr~AL~nLL~~N~d~~~LLe~~IdrCYt~~~~vA~GcF~aLa~ 2051 (2056)
++.-| ..+..=++.+..+.+.-++.=+-.||-++=..|+. ...++-...-....+..|+.+-..||+.
T Consensus 606 ~~g~~-----------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 606 LLRDY-----------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTKDPVDFVRQAAMIALSM 673 (963)
T ss_dssp TSSSC-----------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ccCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 43333 12333344555677877887777888777666763 5566656666666777788888888887
Q ss_pred Hhh
Q psy7128 2052 LFS 2054 (2056)
Q Consensus 2052 Vfs 2054 (2056)
|..
T Consensus 674 Ig~ 676 (963)
T 4ady_A 674 ILI 676 (963)
T ss_dssp HST
T ss_pred Hhc
Confidence 754
No 12
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=30.77 E-value=5.8e+02 Score=32.53 Aligned_cols=201 Identities=13% Similarity=0.097 Sum_probs=99.7
Q ss_pred hHHHHHHHhcccccCChhhHHHHHHHhcCCCHH-----------HHHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHH
Q psy7128 1764 PTGLYKLLVPLLRCDTTDVRDAVVHALGNINSE-----------ALKDLMEELSVYIREAVDRKTENMRRRRRRDALRLQ 1832 (2056)
Q Consensus 1764 ar~LFklvvPlLr~e~~~IRdAvV~ALGsIN~~-----------ayr~LLEEL~~~v~EA~dRk~sn~RRrrRrD~LRle 1832 (2056)
...++..++..|..+ ..+|.++..||+.+-.. -++.+++.|... +++.. ....+|..
T Consensus 452 ~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~----l~~~d-------~~~~vr~~ 519 (861)
T 2bpt_A 452 LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGA----ANRID-------NEFNARAS 519 (861)
T ss_dssp HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHH----HTCSC-------CGGGHHHH
T ss_pred HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH----HhCcC-------cchHHHHH
Confidence 456778888888776 89999999998754221 122222222222 21111 11346777
Q ss_pred HHHHHHHhhccCccCCCCCCC-cchhHHHHHHHHHHHHHhc------chhhhHHHHHHHHHHHHHHHHHHhcCCCccccc
Q psy7128 1833 LVRVFELIAEHGTFGACSPTM-PGLLSPLAEYVDGARLCLE------LEADKQILREIKAHFCNFVCKMIHSFPLESRQT 1905 (2056)
Q Consensus 1833 I~hV~eltAe~gvf~~~~~~~-~~l~~~lveyIkd~R~fL~------~E~d~D~lq~LR~hFc~lve~Li~~~~~~~~~~ 1905 (2056)
+...+..++.. .......+ ..+...+++.+ ...+. .+.+.+....+|.+.|..+..++.+++.+
T Consensus 520 a~~al~~l~~~--~~~~~~~~~~~l~~~l~~~l---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---- 590 (861)
T 2bpt_A 520 AFSALTTMVEY--ATDTVAETSASISTFVMDKL---GQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS---- 590 (861)
T ss_dssp HHHHHHHHHHH--CCGGGHHHHHHHHHHHHHHH---HHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG----
T ss_pred HHHHHHHHHHH--cchhhHHHHHHHHHHHHHHH---HHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh----
Confidence 77777777653 21110000 11222222222 22211 12222356788999999999999988532
Q ss_pred cCCHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHh-ccCCCcCCCccc
Q psy7128 1906 LLKRDLRRNLFSLFTSWAGQYGRNLNITQSYSVSMPNPPASNPGPEALKTSEEELQLTSLSAMSAVL-TCGPVFDPSTLL 1984 (2056)
Q Consensus 1906 ~f~~elRksLF~Lf~~WcG~~g~~~~~~~rre~~mr~~~~s~r~~aa~e~e~~~Lq~aAL~AMAAvL-C~GPifd~~~~~ 1984 (2056)
+.+. -..++..+...-.... . + .++..++.+++++. ..|.-|.+
T Consensus 591 ~~~~--~~~l~~~l~~~l~~~~--~--------------------~-------~v~~~~~~~l~~l~~~~~~~~~~---- 635 (861)
T 2bpt_A 591 VEPV--ADMLMGLFFRLLEKKD--S--------------------A-------FIEDDVFYAISALAASLGKGFEK---- 635 (861)
T ss_dssp TGGG--HHHHHHHHHHHHHSTT--G--------------------G-------GTHHHHHHHHHHHHHHHGGGGHH----
T ss_pred hHHH--HHHHHHHHHHHHccCC--C--------------------C-------cHHHHHHHHHHHHHHHHhhhHHH----
Confidence 1111 2244444333322110 0 0 12334455554422 12332311
Q ss_pred CCCcchHHHHHHHhcCCchhHHHHHHHHHHHHHHhCC
Q psy7128 1985 AEDGVLYPWLDMLLASSEEKTYQIGCQTVILLLECNP 2021 (2056)
Q Consensus 1985 ~edG~ll~WID~If~S~s~r~~~igr~AL~nLL~~N~ 2021 (2056)
.-..++..|-..++..+.+++.-+-.++..+...-.
T Consensus 636 -~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 671 (861)
T 2bpt_A 636 -YLETFSPYLLKALNQVDSPVSITAVGFIADISNSLE 671 (861)
T ss_dssp -HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG
T ss_pred -HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc
Confidence 001245555555666777788778888887776654
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=28.11 E-value=5.9e+02 Score=33.07 Aligned_cols=87 Identities=18% Similarity=0.126 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhccCCCcCCCcccCCCcchHHHHHHHhcCCchhHHHHHHHHHHHHHHhCC-----CCchhHHHHHHh
Q psy7128 1959 ELQLTSLSAMSAVLTCGPVFDPSTLLAEDGVLYPWLDMLLASSEEKTYQIGCQTVILLLECNP-----DMGPLLDWVVDR 2033 (2056)
Q Consensus 1959 ~Lq~aAL~AMAAvLC~GPifd~~~~~~edG~ll~WID~If~S~s~r~~~igr~AL~nLL~~N~-----d~~~LLe~~Idr 2033 (2056)
+++.+|..++..+....| +. .. ..++..+...+.+++.+.+.-|-.||.++.+... -.+.+++.++..
T Consensus 336 ~vr~~a~~~L~~la~~~~--~~--~~---~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~ 408 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYR--DE--LL---PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQC 408 (852)
T ss_dssp CHHHHHHHHHHHHHHHHG--GG--GH---HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcc--HH--HH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 355666666655222211 10 11 3478999999999999999999999999876443 335677777777
Q ss_pred hcCCCccchhhHHHHHHHH
Q psy7128 2034 CYTASVQVADGCFLALATL 2052 (2056)
Q Consensus 2034 CYt~~~~vA~GcF~aLa~V 2052 (2056)
.-..++.|......+|.++
T Consensus 409 l~d~~~~Vr~~a~~~l~~l 427 (852)
T 4fdd_A 409 LSDKKALVRSITCWTLSRY 427 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 7666667776666666544
No 14
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=27.54 E-value=7.8e+02 Score=28.57 Aligned_cols=231 Identities=14% Similarity=0.037 Sum_probs=116.2
Q ss_pred HHHHHHHhcccccC--ChhhHHHHHHHhcCC----CHHHHHH-HHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q psy7128 1765 TGLYKLLVPLLRCD--TTDVRDAVVHALGNI----NSEALKD-LMEELSVYIREAVDRKTENMRRRRRRDALRLQLVRVF 1837 (2056)
Q Consensus 1765 r~LFklvvPlLr~e--~~~IRdAvV~ALGsI----N~~ayr~-LLEEL~~~v~EA~dRk~sn~RRrrRrD~LRleI~hV~ 1837 (2056)
..++..++.+|..+ +..+|.+++-|+|.+ ..+.-.. ..+.+-+.+.++.. .--..+|..+.+++
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---------~~~~~vr~~~~~~l 241 (462)
T 1ibr_B 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ---------CPDTRVRVAALQNL 241 (462)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT---------CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHH
Confidence 46899999999998 799999999999863 1111000 00111112222211 01134555566666
Q ss_pred HHhhcc--CccCCCCC-------------CCcchhHHHHHHHHHHHHHh------cchhh-------hHHHHHHHHHHHH
Q psy7128 1838 ELIAEH--GTFGACSP-------------TMPGLLSPLAEYVDGARLCL------ELEAD-------KQILREIKAHFCN 1889 (2056)
Q Consensus 1838 eltAe~--gvf~~~~~-------------~~~~l~~~lveyIkd~R~fL------~~E~d-------~D~lq~LR~hFc~ 1889 (2056)
..+++. ..|..... .++.++...++|+..+.... ..+.+ ......++.|.-.
T Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (462)
T 1ibr_B 242 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321 (462)
T ss_dssp HHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhh
Confidence 555532 01111000 01333344444443332111 00000 0001123445555
Q ss_pred HHHHHHhcCCCcc----ccccCCHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCCCChhhhhhhHHHHHHHHH
Q psy7128 1890 FVCKMIHSFPLES----RQTLLKRDLRRNLFSLFTSWAGQYGRNLNITQSYSVSMPNPPASNPGPEALKTSEEELQLTSL 1965 (2056)
Q Consensus 1890 lve~Li~~~~~~~----~~~~f~~elRksLF~Lf~~WcG~~g~~~~~~~rre~~mr~~~~s~r~~aa~e~e~~~Lq~aAL 1965 (2056)
++..+++.+.... ...| ..|+.+..++..=+...+. . .... -+.... ..+....-..+.+|+
T Consensus 322 l~p~l~~~l~~~d~d~~~~~~---~~r~~a~~~L~~l~~~~~~-~-~~~~---~~~~l~------~~l~~~~~~~r~aal 387 (462)
T 1ibr_B 322 LVPILTQTLTKQDENDDDDDW---NPCKAAGVCLMLLATCCED-D-IVPH---VLPFIK------EHIKNPDWRYRDAAV 387 (462)
T ss_dssp HHHHHHHHTTCCCSSCCTTCC---SHHHHHHHHHHHHHHHTTT-T-HHHH---HHHHHH------HHTTCSSHHHHHHHH
T ss_pred ccHHHHHHHHhcccccccccc---hHHHHHHHHHHHHHHhccH-H-HHHH---HHHHHH------HHhcCCChHHHHHHH
Confidence 6666665553211 1122 5677777777666654321 0 0000 000000 011112356889999
Q ss_pred HHHHHHhccCCCcCCCcccCCCcchHHHHHHHhcCCchhHHHHHHHHHHHHHHhCC
Q psy7128 1966 SAMSAVLTCGPVFDPSTLLAEDGVLYPWLDMLLASSEEKTYQIGCQTVILLLECNP 2021 (2056)
Q Consensus 1966 ~AMAAvLC~GPifd~~~~~~edG~ll~WID~If~S~s~r~~~igr~AL~nLL~~N~ 2021 (2056)
.|+++ ++.|+--+. ....-..++.=|=..+..++.+++..|..||..+...-.
T Consensus 388 ~~l~~-l~~~~~~~~--~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 388 MAFGC-ILEGPEPSQ--LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHH-TSSSSCTTT--TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHH-HhcCCcHHH--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999 777754221 111224467777778888999999999999999998654
No 15
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=23.63 E-value=1.8e+02 Score=30.77 Aligned_cols=41 Identities=29% Similarity=0.384 Sum_probs=31.6
Q ss_pred HHHHHHHhcccccCChhhHHHHHHHhcCCCH-HHHHHHHHHH
Q psy7128 1765 TGLYKLLVPLLRCDTTDVRDAVVHALGNINS-EALKDLMEEL 1805 (2056)
Q Consensus 1765 r~LFklvvPlLr~e~~~IRdAvV~ALGsIN~-~ayr~LLEEL 1805 (2056)
.+-+..++.+|..+...+|..++.+||.+.. .+.+.|++-|
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l 59 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKAL 59 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4456778888999999999999999998876 5555554433
Done!