RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7128
(2056 letters)
>gnl|CDD|222604 pfam14222, MOR2-PAG1_N, Cell morphogenesis N-terminal. This family
is the conserved N-terminal region of proteins that are
involved in cell morphogenesis.
Length = 538
Score = 208 bits (531), Expect = 3e-57
Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 5/171 (2%)
Query: 717 ERRDLAVEFVFCLILIEVLKQLPFHPGHDNLVTYIETVAFKHFKYREGIQNDPNATNIH- 775
ERR L ++ C +LIE++KQ P +++ +E + F K + Q +++ +
Sbjct: 2 ERRSLVSIYILCRVLIEIVKQSPLESLTEDMAEKLEEIVFGQLKTADPEQ--ISSSPLRL 59
Query: 776 TVADLYAEVLGVLAQSRFQSVRKRFMSELKELRFKEPNTHTTQSIISLLMGMKFFRVKMV 835
+L+AE+LGVL++ RF SV RF++EL++LR KE + I L+ GM++ R+K
Sbjct: 60 ANWNLFAELLGVLSEIRFTSVSDRFIAELEKLR-KEDSPDAESKIELLIRGMRYLRLKTY 118
Query: 836 PIEEFEASFQFMQECAQYFTDV-KDKDVKHALAGLFVEILVPVAATVKNEV 885
P E FE S FMQ A+ F++ +KD+KHA + E+L+P+AA EV
Sbjct: 119 PEEAFEESADFMQSLAKLFSNAHGNKDLKHAYCEVLEELLLPLAAKATAEV 169
Score = 173 bits (441), Expect = 2e-45
Identities = 75/203 (36%), Positives = 103/203 (50%), Gaps = 20/203 (9%)
Query: 1103 WPIVYSRLHTLFPTIVP--FLTTHSFTLISANSFIC------FPLAESLYRLLWVYMIRI 1154
W + + L T + P F + +L+ A ++L RLLWVY+
Sbjct: 195 WAVAF-PLTTTLLCVSPKEFFLSQWLSLLEALIAKLKDKPTRPVALQALSRLLWVYL-YR 252
Query: 1155 KCESNSATQSRLQSIVNSLFPKGSKAVVPRD-TPLNIFVKIIQFIAQERLDFAMREIVFD 1213
ES + T RL SI+ SLFPKG + ++ D PL+ V+II+FI + DF REI+F
Sbjct: 253 CPESPNNTLRRLDSILRSLFPKGKRTILTTDPEPLDPLVQIIRFIGFKHPDFCFREIIFP 312
Query: 1214 LLSVGRPIKLI--LTPERMSIGLRAFLVVADSLQQKEGEPPMPRTSGVLPSGNTLRVKKT 1271
LL+ I L PERM IG+RAFL + L+ KE PP P TS PS N LRVKKT
Sbjct: 313 LLNSDLFGSSIENLNPERMVIGIRAFLAILADLENKEQPPPPPPTS--PPSSNNLRVKKT 370
Query: 1272 YLNK-----VSKTYLILLLFYRF 1289
++ V+ + I + F
Sbjct: 371 PSSEYLTNEVALSIGIKEYYPEF 393
Score = 86.5 bits (215), Expect = 5e-17
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 946 NHCTTEEPDEMITGERKPRIDLFRTCVAAVPRLIPDAMTGGELVDLLSRLTLHMDEELRA 1005
+ D+ +T + KP+ DLFR V A+PR + D++ L++LL R T+H+D +
Sbjct: 427 IAFSFSRRDDHLTDQ-KPQFDLFRVAVQAIPRCLSDSIPFNSLIELLCRGTVHVDSNIAE 485
Query: 1006 LAYQSLQTLVIDFPDWRHDV---LAVFYFGTHDMT 1037
A QSL+ + P V A F F D
Sbjct: 486 SAAQSLKAIARQSP-DAQQVIIGFARFIFNFDDRY 519
>gnl|CDD|218335 pfam04934, Med6, MED6 mediator sub complex component. Component of
RNA polymerase II holoenzyme and mediator sub complex.
Length = 134
Score = 121 bits (306), Expect = 7e-32
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 238 VLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSRLLSTVHHLQSA 297
+ HV+EP L+VIRKQ RH+ ++ TP+ADYYII G +YQAP L SV+SSRLLS V HL+ A
Sbjct: 63 LAHVREPDLWVIRKQRRHNPDEVTPLADYYIIGGNIYQAPTLYSVLSSRLLSAVLHLEKA 122
Query: 298 FEEVNSLSKYNP 309
F+ ++S+S+++P
Sbjct: 123 FDTLSSMSRFSP 134
>gnl|CDD|227428 COG5097, MED6, RNA polymerase II transcriptional regulation
mediator [Transcription].
Length = 210
Score = 76.9 bits (189), Expect = 2e-15
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 240 HVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVYQAPDLASVISSRLLSTVHHLQSAFE 299
+EP L+VIRKQ+RH+ + TP+ Y I +Y AP S+ R+ +++ L S +
Sbjct: 76 SNREPTLWVIRKQYRHNDTEETPLMYYIIHGHNIYAAPTNYSIYRCRMGDSMYQLNSFLD 135
Query: 300 EVNSLSKYNPNKGYSW 315
+ ++NP G +
Sbjct: 136 RMMEKRRFNPFSGPKY 151
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein;
Provisional.
Length = 522
Score = 50.9 bits (122), Expect = 6e-06
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 619 NPHISSNNNNNNNNNNNNNNNNNNN-NNNNNNNNPVVIFLDKAYKGPSH 666
H+S +NN ++N NNNNNNNN N NN NNN N L + K +
Sbjct: 5 REHLSVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLPRGKKKQEN 53
Score = 43.2 bits (102), Expect = 0.001
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 621 HISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVIFLDKAYKGPSHVAKSGRKCFGTESG 680
+++ + + +NN ++N NNNNNNNN N+N +K R E+
Sbjct: 1 NVNLREHLSVHNNADDNYNNNNNNNNQINSNN-----PNNNGNNQA-SKLPRGKKKQENP 54
Query: 681 PSKIL 685
+KI
Sbjct: 55 FNKID 59
Score = 42.8 bits (101), Expect = 0.002
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 613 SVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPV-----VIFLDKAYKGPSHV 667
SV A+ + ++NNNNNN N+NN NNN NN + +D+ Y +
Sbjct: 9 SVHNNADDNYNNNNNNNNQINSNNPNNNGNNQASKLPRGKKKQENPFNKIDEVYYQNEKL 68
Query: 668 AKSGRK 673
R+
Sbjct: 69 NIKRRE 74
>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain. This is a
short domain found in bacterial type II/III secretory
system proteins. The architecture of these proteins
suggest that this family may be functionally analogous
to pfam03958.
Length = 95
Score = 43.5 bits (103), Expect = 5e-05
Identities = 5/30 (16%), Positives = 26/30 (86%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
+SS+ +N++++++N++N +++++++ +++
Sbjct: 26 VSSSGSNSSSSSSNSSNGGSSSSSSSGDSS 55
Score = 42.3 bits (100), Expect = 1e-04
Identities = 5/29 (17%), Positives = 25/29 (86%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
SS +N++++++N++N +++++++ ++++
Sbjct: 28 SSGSNSSSSSSNSSNGGSSSSSSSGDSSS 56
Score = 40.8 bits (96), Expect = 5e-04
Identities = 4/29 (13%), Positives = 24/29 (82%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
S +N++++++N++N +++++++ ++++
Sbjct: 29 SGSNSSSSSSNSSNGGSSSSSSSGDSSSG 57
Score = 40.4 bits (95), Expect = 8e-04
Identities = 4/29 (13%), Positives = 24/29 (82%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
S +++ +N++++++N++N +++++++ +
Sbjct: 25 SVSSSGSNSSSSSSNSSNGGSSSSSSSGD 53
Score = 40.4 bits (95), Expect = 8e-04
Identities = 4/30 (13%), Positives = 23/30 (76%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
S +++ +N++++++N++N +++++++
Sbjct: 23 SGSVSSSGSNSSSSSSNSSNGGSSSSSSSG 52
Score = 39.2 bits (92), Expect = 0.002
Identities = 4/30 (13%), Positives = 25/30 (83%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
++S + +++ +N++++++N++N ++++++
Sbjct: 21 VTSGSVSSSGSNSSSSSSNSSNGGSSSSSS 50
>gnl|CDD|218552 pfam05316, VAR1, Mitochondrial ribosomal protein (VAR1). This
family consists of the yeast mitochondrial ribosomal
proteins VAR1. Mitochondria possess their own ribosomes
responsible for the synthesis of a small number of
proteins encoded by the mitochondrial genome. In yeast
the two ribosomal RNAs and a single ribosomal protein,
VAR1, are products of mitochondrial genes, and the
remaining approximately 80 ribosomal proteins are
encoded in the nucleus. VAR1 along with 15S rRNA are
necessary for the formation of mature 37S subunits.
Length = 350
Score = 47.2 bits (112), Expect = 6e-05
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 619 NPHISSNNNNNN-------NNNNNNNNNNNNNNNNNNNNNPVVIFLDK 659
+I++ NNNNN NN+NNN N NN NN N N + + ++K
Sbjct: 227 MNYINNINNNNNIKYNNMINNSNNNLNINNIYNNLNINKISMDLLMNK 274
Score = 45.7 bits (108), Expect = 2e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 619 NPHISSNN--NNNNNNNNNNNNN--NNNNNNNNNNNNPVVIFLDK 659
N H S N NN NNNNN NN NN+NNN N NN + ++K
Sbjct: 221 NSHNISMNYINNINNNNNIKYNNMINNSNNNLNINNIYNNLNINK 265
Score = 44.9 bits (106), Expect = 3e-04
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 606 YERQMRPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
Y + + ++ + +IS N NN NNNNN NN NN+NNN N
Sbjct: 209 YSKLLNNNMPKNNSHNISMNYINNINNNNNIKYNNMINNSNNNLNI 254
Score = 43.0 bits (101), Expect = 0.001
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 621 HISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVIFLDKAYKG 663
++ +N+NNN N NN NN N N + + N +I +KG
Sbjct: 243 NMINNSNNNLNINNIYNNLNINKISMDLLMNKYLIGWSILFKG 285
Score = 41.1 bits (96), Expect = 0.005
Identities = 21/46 (45%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 625 NNNNNNNNNNNNNN---------NNNNNNNNNNNNNPVVIFLDKAY 661
NNN NN NNNNNN N N NNNNN N + L Y
Sbjct: 123 YNNNINNINNNNNNYYMNMINKLMNILNINNNNNMNNISNILSYYY 168
Score = 36.8 bits (85), Expect = 0.11
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 619 NPHISSNNNNNNNNNN---------NNNNNNNNNNNNNNNNN 651
+ ++ NN NNNNNN N N NNNNN NN +N
Sbjct: 121 YYYNNNINNINNNNNNYYMNMINKLMNILNINNNNNMNNISN 162
Score = 34.1 bits (78), Expect = 0.84
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 21/47 (44%)
Query: 626 NNNNNNNNNNNN---------------------NNNNNNNNNNNNNN 651
NNN NN NNN NN NNNNNN
Sbjct: 90 NNNIINNGQIKKIIINKPKFKHTINKVNINFYYYNNNINNINNNNNN 136
Score = 33.0 bits (75), Expect = 1.8
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 625 NNNNNNNNNNNNNNNNNNNNNNNNNNN 651
NN N N N NN+N NNNN N N
Sbjct: 312 NNINKNYKLNYIPNNHNIYNNNNVNKN 338
Score = 32.6 bits (74), Expect = 2.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
+++N NN + N NNN N N NN N
Sbjct: 12 MNNNRMNNMDINIKNNNMNKYLNEYNNKGN 41
Score = 32.2 bits (73), Expect = 2.8
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 22/47 (46%)
Query: 625 NNNNNNNNNNN----------------------NNNNNNNNNNNNNN 649
NNN NN NNN NN NNNNNN
Sbjct: 90 NNNIINNGQIKKIIINKPKFKHTINKVNINFYYYNNNINNINNNNNN 136
Score = 32.2 bits (73), Expect = 2.9
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 10/36 (27%)
Query: 624 SNNNN----NNNNNN------NNNNNNNNNNNNNNN 649
S +N NN N N NN+N NNNN N N
Sbjct: 303 SLSNKLYLKNNINKNYKLNYIPNNHNIYNNNNVNKN 338
Score = 31.8 bits (72), Expect = 3.7
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNNNN 647
+ N N N NNN NN NNNNNN
Sbjct: 111 HTINKVNINFYYYNNNINNINNNNNN 136
Score = 30.7 bits (69), Expect = 8.5
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 13/39 (33%)
Query: 625 NNNNNNNNNNNNNNNN--------NNNNN-----NNNNN 650
NNN NN + N NNN NN N NN NN
Sbjct: 13 NNNRMNNMDINIKNNNMNKYLNEYNNKGNKLQHINNMNN 51
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 43.9 bits (103), Expect = 0.001
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 607 ERQMRPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNN 650
ER V+ N NNN NN ++NNNNNNNNNN NN
Sbjct: 656 ERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINN 699
Score = 40.8 bits (95), Expect = 0.010
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
+ +N NNN NN ++NNNNNNNNNN NN
Sbjct: 671 TKDNKENNNKNNKDDNNNNNNNNNNKINN 699
Score = 40.4 bits (94), Expect = 0.013
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 593 HCLPSILRA--LFAWYERQMRPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNN 650
H L +I A +F R+ +V+ + +N NNN NN ++NNNNNNNNNN
Sbjct: 638 HRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKI 697
Query: 651 N 651
N
Sbjct: 698 N 698
Score = 38.1 bits (88), Expect = 0.067
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 629 NNNNNNNNNNNNNNNNNNNNNNNPV 653
+N NNN NN ++NNNNNNNNNN +
Sbjct: 673 DNKENNNKNNKDDNNNNNNNNNNKI 697
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 42.5 bits (99), Expect = 0.003
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 612 PSVEAAANPHISSNNNNNNNNN-----NNNNNNNNNNNNNNNNNN 651
PS AN ++ N N NN N N N N N+N N N+N N
Sbjct: 308 PSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTN 352
Score = 39.4 bits (91), Expect = 0.021
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 617 AANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVIFLDKAYKGPSHVAKS 670
+ P ++N N N+N N N+N N N ++NNN+N+ + +A K H+ K+
Sbjct: 330 TSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNSSASAIIAEAQK---HLGKA 380
Score = 39.4 bits (91), Expect = 0.022
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 611 RPSVEAAANPHISSNNNNNNNNNNNNN-----NNNNNNNNNNNNNNP 652
+P+ + N + + N N N N NN N N N N N+N N N
Sbjct: 303 KPAPAPSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNS 349
Score = 36.7 bits (84), Expect = 0.13
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 619 NPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
N S N N N N+N N N+N N N ++NNN
Sbjct: 329 NTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNN 361
Score = 35.9 bits (82), Expect = 0.24
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 612 PSVEAAANPHISSNNNNNNNNNNNNNNNNNNN-----NNNNNNNN 651
P+ A P S+N N N N N N N NN N N N N N
Sbjct: 298 PTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTN 342
>gnl|CDD|205936 pfam13763, DUF4167, Domain of unknown function (DUF4167).
Length = 80
Score = 37.3 bits (87), Expect = 0.005
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 626 NNNNNNNNNNNNNNNNNNNNNNNNNNP 652
NNNN NNN + N N ++N P
Sbjct: 1 RGRNNNNRNNNRSGGNPRNRVFDSNGP 27
Score = 35.7 bits (83), Expect = 0.024
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 625 NNNNNNNNNNNNNNNNNNNNNNNNNNNPV 653
NNNN NNN + N N ++N V
Sbjct: 1 RGRNNNNRNNNRSGGNPRNRVFDSNGPDV 29
Score = 34.6 bits (80), Expect = 0.046
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 624 SNNNNNNNNNNNNNNNNNNNNNNN 647
NNNN NNN + N N ++N
Sbjct: 2 GRNNNNRNNNRSGGNPRNRVFDSN 25
Score = 33.4 bits (77), Expect = 0.12
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNN 646
NNNN NNN + N N ++N
Sbjct: 2 GRNNNNRNNNRSGGNPRNRVFDSN 25
Score = 31.5 bits (72), Expect = 0.70
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNN--NNNNNNNPVVIF 656
++NN NNN + N N ++N + +
Sbjct: 4 NNNNRNNNRSGGNPRNRVFDSNGPDVKVRGTAQQLI 39
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 41.0 bits (96), Expect = 0.009
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 615 EAAANPHISSNNNNN----NNNNNNNNNNNNNNNNNNNNNNP 652
E H++ N N +NNNNNN NN++ N +N N
Sbjct: 35 ENFQFSHLNFYNEKNEEKSSNNNNNNYNNSSINRKKDNKNYM 76
Score = 34.8 bits (80), Expect = 0.72
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNNN 650
SSNNNNNN NN++ N +N N +
Sbjct: 53 SSNNNNNNYNNSSINRKKDNKNYMKRSL 80
Score = 33.7 bits (77), Expect = 1.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 618 ANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
S+NNNNNN NN++ N +N N +
Sbjct: 47 EKNEEKSSNNNNNNYNNSSINRKKDNKNYMKRSL 80
Score = 33.3 bits (76), Expect = 2.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
S+NNNNN NN++ N +N N +
Sbjct: 53 SSNNNNNNYNNSSINRKKDNKNYMKRSLLQL 83
>gnl|CDD|220296 pfam09580, Spore_YhcN_YlaJ, Sporulation lipoprotein YhcN/YlaJ
(Spore_YhcN_YlaJ). This entry contains YhcN and YlaJ,
which are predicted lipoproteins that have been detected
as spore proteins but not vegetative proteins in
Bacillus subtilis. Both appear to be expressed under
control of the RNA polymerase sigma-G factor. The
YlaJ-like members of this family have a low-complexity,
strongly acidic, 40-residue C-terminal domain.
Length = 169
Score = 37.3 bits (87), Expect = 0.025
Identities = 14/44 (31%), Positives = 16/44 (36%)
Query: 609 QMRPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
R +V + NN NN NNNN NN N N
Sbjct: 18 DNRQNVTDNDGNTNNVNNRNNRNNNNGYGRLTKNNVTGENGYNN 61
Score = 36.2 bits (84), Expect = 0.068
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 619 NPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
N + +N NN NNNN NN N NN
Sbjct: 29 NTNNVNNRNNRNNNNGYGRLTKNNVTGENGYNNI 62
Score = 35.8 bits (83), Expect = 0.10
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 619 NPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPV 653
N ++N+ N NN NN NN NNNN N V
Sbjct: 19 NRQNVTDNDGNTNNVNNRNNRNNNNGYGRLTKNNV 53
Score = 35.4 bits (82), Expect = 0.13
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 608 RQMRPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
+ + ++++ NN NNNN NN N NN
Sbjct: 19 NRQNVTDNDGNTNNVNNRNNRNNNNGYGRLTKNNVTGENGYNNIE 63
Score = 34.6 bits (80), Expect = 0.26
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 625 NNNNNNNNNNNNNNNNNNNNNNNNNNNPV 653
+N N +N+ N NN NN NN NNNN
Sbjct: 18 DNRQNVTDNDGNTNNVNNRNNRNNNNGYG 46
Score = 34.2 bits (79), Expect = 0.30
Identities = 11/29 (37%), Positives = 11/29 (37%)
Query: 625 NNNNNNNNNNNNNNNNNNNNNNNNNNNPV 653
NN NN NNNN NN N
Sbjct: 33 VNNRNNRNNNNGYGRLTKNNVTGENGYNN 61
Score = 33.9 bits (78), Expect = 0.39
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 618 ANPHISSNNNNNNNNNNNNNNNNNNNNNNNN 648
N + +NNN NN N NN
Sbjct: 34 NNRNNRNNNNGYGRLTKNNVTGENGYNNIER 64
Score = 33.1 bits (76), Expect = 0.67
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNN 649
+ NNNN NN N NN
Sbjct: 38 NRNNNNGYGRLTKNNVTGENGYNNIER 64
Score = 32.3 bits (74), Expect = 1.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 625 NNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
++N N +N+ N NN NN NN NNNN
Sbjct: 17 DDNRQNVTDNDGNTNNVNNRNNRNNNNG 44
Score = 32.3 bits (74), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
+NN +++N N +N+ N NN NN NN
Sbjct: 10 GTNNAADDDNRQNVTDNDGNTNNVNNRNN 38
Score = 32.3 bits (74), Expect = 1.5
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 624 SNNNNNNNNNNNN-----NNNNNNNNNNNNNNNP 652
NN +++N N N NN NN NN NNN
Sbjct: 10 GTNNAADDDNRQNVTDNDGNTNNVNNRNNRNNNN 43
Score = 31.5 bits (72), Expect = 2.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 617 AANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNN 650
AA+ N +N+ N NN NN NN NNNN
Sbjct: 14 AADDDNRQNVTDNDGNTNNVNNRNNRNNNNGYGR 47
Score = 30.4 bits (69), Expect = 6.8
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 629 NNNNNNNNNNNNNNNNNNNNNNNPVVIFLDKAYKGPSHVAKSGR 672
NN +++N N +N+ N NN G + K+
Sbjct: 10 GTNNAADDDNRQNVTDNDGNTNNVNNRNNRNNNNGYGRLTKNNV 53
>gnl|CDD|152107 pfam11671, Apis_Csd, Complementary sex determiner protein. This
family of proteins represents the complementary sex
determiner in the honeybee. In the honeybee, the
mechanism of sex determination depends on the csd gene
which produces an SR-type protein. Males are homozygous
while females are homozygous for the csd gene.
Heterozygosity generates an active protein which
initiates female development.
Length = 146
Score = 36.2 bits (83), Expect = 0.054
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 611 RPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
R E + I S+ +N +NN N NNN NN NN N + N
Sbjct: 37 RTERERSREHKIISSLSNLSNNYNYNNNYNNYNNYNKHYYN 77
Score = 32.4 bits (73), Expect = 1.1
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 622 ISSNNNNNNNNNNNNN-NNNNNNNNNNNNNN 651
ISS +N +NN N NNN NN NN N + N N
Sbjct: 49 ISSLSNLSNNYNYNNNYNNYNNYNKHYYNIN 79
Score = 31.6 bits (71), Expect = 1.8
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 613 SVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNN 649
S E +S+ +NN N NNN NN NN N + N N
Sbjct: 43 SREHKIISSLSNLSNNYNYNNNYNNYNNYNKHYYNIN 79
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 38.0 bits (88), Expect = 0.070
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
I NN ++N+NN++ +++N+ +N +N NP
Sbjct: 316 IHRNNGSSNSNNDDTSSSNHLGSNRISNRNP 346
Score = 35.0 bits (80), Expect = 0.55
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
+N ++N+NN++ +++N+ +N +N N
Sbjct: 318 RNNGSSNSNNDDTSSSNHLGSNRISNRNPS 347
Score = 33.0 bits (75), Expect = 2.1
Identities = 8/29 (27%), Positives = 21/29 (72%)
Query: 621 HISSNNNNNNNNNNNNNNNNNNNNNNNNN 649
H ++ ++N+NN++ +++N+ +N +N N
Sbjct: 317 HRNNGSSNSNNDDTSSSNHLGSNRISNRN 345
Score = 31.9 bits (72), Expect = 4.8
Identities = 8/30 (26%), Positives = 22/30 (73%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
+ ++N+NN++ +++N+ +N +N N ++P
Sbjct: 320 NGSSNSNNDDTSSSNHLGSNRISNRNPSSP 349
Score = 31.5 bits (71), Expect = 6.3
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 618 ANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
A N + NN ++N+NN++ +++N+ +N
Sbjct: 307 AKTGDPKNIIHRNNGSSNSNNDDTSSSNHLGSNRI 341
>gnl|CDD|218082 pfam04425, Bul1_N, Bul1 N terminus. This family contains the N
terminus of Saccharomyces cerevisiae Bul1. Bul1 binds
the ubiquitin ligase Rsp5, via an N terminal PPSY motif.
The complex containing Bul1 and Rsp5 is involved in
intracellular trafficking of the general amino acid
permease Gap1, degradation of Rog1 in cooperation with
Bul2 and GSK-3, and mitochondrial inheritance. Bul1 may
contain HEAT repeats.
Length = 432
Score = 37.3 bits (87), Expect = 0.088
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 4/80 (5%)
Query: 586 AFGSVAEHCLPSILRALFAWYERQMRPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNNN 645
++ V + +S + N NN +N ++
Sbjct: 53 SYEEVPSSSPSPTSPSSSNTVSASSLSLESPNTTEASNSPEETHLNIENNEHNTPIEDDL 112
Query: 646 NNNNNNPVVIFLDKAYKGPS 665
N+++N LD YK P
Sbjct: 113 NDSDN----TILDNLYKLPK 128
>gnl|CDD|214408 MTH00036, ATP8, ATP synthase F0 subunit 8; Validated.
Length = 54
Score = 33.1 bits (76), Expect = 0.098
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 625 NNNNNNNNNNNNNNNNNNNNNNNN 648
NN + N +N+++N +++NNNN
Sbjct: 28 LLNNWPSTNASNSSSNTSSSNNNN 51
Score = 33.1 bits (76), Expect = 0.098
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 626 NNNNNNNNNNNNNNNNNNNNNNNN 649
NN + N +N+++N +++NNNN
Sbjct: 28 LLNNWPSTNASNSSSNTSSSNNNN 51
Score = 33.1 bits (76), Expect = 0.098
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 627 NNNNNNNNNNNNNNNNNNNNNNNN 650
NN + N +N+++N +++NNNN
Sbjct: 28 LLNNWPSTNASNSSSNTSSSNNNN 51
Score = 33.1 bits (76), Expect = 0.098
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 628 NNNNNNNNNNNNNNNNNNNNNNNN 651
NN + N +N+++N +++NNNN
Sbjct: 28 LLNNWPSTNASNSSSNTSSSNNNN 51
Score = 30.8 bits (70), Expect = 0.66
Identities = 7/23 (30%), Positives = 18/23 (78%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNN 644
+++ + N +N+++N +++NNNN
Sbjct: 29 LNNWPSTNASNSSSNTSSSNNNN 51
Score = 30.4 bits (69), Expect = 0.85
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNN 645
+ +N + N +N+++N +++NNNN
Sbjct: 28 LLNNWPSTNASNSSSNTSSSNNNN 51
Score = 29.7 bits (67), Expect = 1.4
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 621 HISSNNNNNNNNNNNNNNNNNNN 643
+ + N +N+++N +++NNNN
Sbjct: 29 LNNWPSTNASNSSSNTSSSNNNN 51
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 37.1 bits (86), Expect = 0.12
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 611 RPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVV 654
+P+ P I +N + NNNN +NN N + N ++
Sbjct: 41 KPNEN---TPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNP 81
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat family is
related to armadillo/beta-catenin-like repeats (see
pfam00514). These EZ repeats are found in subunits of
cyanobacterial phycocyanin lyase and other proteins and
probably carry out a scaffolding role.
Length = 55
Score = 32.4 bits (74), Expect = 0.17
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 1767 LYKLLVPLLRCDTTDVRDAVVHALGNI 1793
L L+PLL+ D +VR+A ALG I
Sbjct: 29 LLPALLPLLKDDDDEVREAAAWALGRI 55
>gnl|CDD|219312 pfam07150, DUF1390, Protein of unknown function (DUF1390). This
family consists of several Paramecium bursaria chlorella
virus 1 (PBCV-1) proteins of around 250 residues in
length. The function of this family is unknown.
Length = 229
Score = 35.4 bits (82), Expect = 0.19
Identities = 13/40 (32%), Positives = 13/40 (32%)
Query: 614 VEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPV 653
SN N NNN NN N N N N V
Sbjct: 47 YRDEKLATTVSNINTGVVNNNVNNINKTINTKNITINLTV 86
Score = 33.5 bits (77), Expect = 0.75
Identities = 13/38 (34%), Positives = 14/38 (36%)
Query: 615 EAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
E A + N NNN NN N N N N P
Sbjct: 50 EKLATTVSNINTGVVNNNVNNINKTINTKNITINLTVP 87
Score = 33.1 bits (76), Expect = 1.3
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 618 ANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVV 654
+ +N N NNN NN N N N N V
Sbjct: 50 EKLATTVSNINTGVVNNNVNNINKTINTKNITINLTV 86
Score = 31.2 bits (71), Expect = 4.9
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 607 ERQMRPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNN 648
E R A +I++ NNN NN N N N N
Sbjct: 44 EEDYRDEKLATTVSNINTGVVNNNVNNINKTINTKNITINLT 85
Score = 30.8 bits (70), Expect = 5.7
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 625 NNNNNNNNNNNNNNNNNNNNNNNNNNNPVVIFL 657
+N N NNN NN N N + I L
Sbjct: 52 LATTVSNINTGVVNNNVNNINKTINTKNITINL 84
>gnl|CDD|168775 PRK07034, PRK07034, hypothetical protein; Provisional.
Length = 536
Score = 35.9 bits (82), Expect = 0.23
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 625 NNNNNNNNNNNNNNNNNNNNNNNNNNN 651
N N++ N NNNN N +NNN N +NNN
Sbjct: 88 NANDSYPNGNNNNPNGDNNNPNGSNNN 114
Score = 35.1 bits (80), Expect = 0.46
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNN 649
++N++ N NNNN N +NNN N +NNN
Sbjct: 88 NANDSYPNGNNNNPNGDNNNPNGSNNN 114
Score = 34.4 bits (78), Expect = 0.74
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 620 PHISSNNNNNNNNNNNNNNNNNNNNNNN 647
P+ + + N NNNN N +NNN N +NNN
Sbjct: 87 PNANDSYPNGNNNNPNGDNNNPNGSNNN 114
Score = 34.0 bits (77), Expect = 0.99
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 619 NPHISSNNNNNNNNNNNNNNNNNNNNN 645
N + S N NNNN N +NNN N +NNN
Sbjct: 88 NANDSYPNGNNNNPNGDNNNPNGSNNN 114
Score = 34.0 bits (77), Expect = 0.99
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 626 NNNNNNNNNNNNNNNNNNNNNNNNNNPV 653
N N++ N NNNN N +NNN N +NN +
Sbjct: 88 NANDSYPNGNNNNPNGDNNNPNGSNNNI 115
Score = 32.8 bits (74), Expect = 1.9
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 608 RQMRPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNN 648
R P V ++++ N NNNN N +NNN N +NNN
Sbjct: 74 RTSAPPVTLYQQQPNANDSYPNGNNNNPNGDNNNPNGSNNN 114
>gnl|CDD|222610 pfam14228, MOR2-PAG1_mid, Cell morphogenesis central region. This
family is the conserved central region of proteins that
are involved in cell morphogenesis.
Length = 1120
Score = 36.1 bits (83), Expect = 0.23
Identities = 76/368 (20%), Positives = 134/368 (36%), Gaps = 114/368 (30%)
Query: 1767 LYKLLVPLLRCDTTDVRDAVVHALGNINSEALKDLMEELSVYIREA---VDRKTENMRRR 1823
L L+ P L+ + + A ALG+ + E + + EL+ ++ E + K + ++
Sbjct: 197 LCHLVFPSLKSGSEGQQLAATLALGHSHLEVCEIMFGELTSFVEEVSSETESKPKWKSQK 256
Query: 1824 RRRDALRLQLVRVFELIAEHGTFGACSPTMPGLLSPLAEYVDGARLCLELEADKQILREI 1883
RR+ LR+ + ++ L+AE+ PG+L+ K LR
Sbjct: 257 WRREDLRVHVANIYRLVAEN--------IWPGMLT-----------------RKPALR-- 289
Query: 1884 KAHFCNFV---CKMIHSFPLESRQTLL-----------------------KRDL--RRNL 1915
HF F+ + I P E+ Q + + DL R+ L
Sbjct: 290 -LHFLKFIEETVRQILVGPSENFQEIQPLRYALASVLRSLAPEFVDAKSERFDLRDRKRL 348
Query: 1916 FSLFTSWA----GQYGRNLNITQSYSVSMPNPPASNPGPEAL-------KTSE--EELQL 1962
F L SW +G++ V +++ + +E E +Q
Sbjct: 349 FDLLLSWCDDVGSTWGQDGGSDYRREVERYKASQHLRSKDSMDKLTFDKEINEQVEAIQW 408
Query: 1963 TSLSAMSAVLTCGPVFDPSTLLAEDGVLYPWLDMLL-------------ASSEEKTY--- 2006
S++AM+++L GP FD G + W++ L A +Y
Sbjct: 409 ASMNAMASLLY-GPCFD-DNARKMSGRVISWINSLFLEPAPRAPFGYSPADPRTPSYSKF 466
Query: 2007 -------------QIGCQTVILL--------LECNPDMGPLLDWVVDRCYTASVQVADGC 2045
Q G +LL L+ N D+ P +D+CY++ +ADG
Sbjct: 467 TGEGMRGGTGRDKQRGSHLRVLLAKSALKNLLQTNLDLFPAC---IDQCYSSDPSIADGY 523
Query: 2046 FLALATLF 2053
F LA ++
Sbjct: 524 FSVLAEVY 531
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 35.8 bits (83), Expect = 0.27
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNNNNNNN 650
I+ N NN +N NNN N NN N
Sbjct: 216 ININKEEKNNGSNVNNNGNKNNKEEQKGN 244
Score = 35.8 bits (83), Expect = 0.28
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
I S N N NN +N NNN N NN
Sbjct: 211 IKSKEININKEEKNNGSNVNNNGNKNNKEE 240
Score = 35.1 bits (81), Expect = 0.50
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 618 ANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
+ N NN +N NNN N NN N
Sbjct: 211 IKSKEININKEEKNNGSNVNNNGNKNNKEEQKGN 244
Score = 31.2 bits (71), Expect = 7.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
NN +N NNN N NN N+ +N
Sbjct: 220 KEEKNNGSNVNNNGNKNNKEEQKGNDLSN 248
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 35.1 bits (81), Expect = 0.41
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 621 HISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVV 654
+ NN N + +++ N+N N N V+
Sbjct: 43 KRHNEEGTFNNYGTNESQSSSTQNSNKNEENIVL 76
Score = 33.2 bits (76), Expect = 1.9
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 618 ANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVI 655
+ N NN N + +++ N+N N +V+
Sbjct: 39 SRRKKRHNEEGTFNNYGTNESQSSSTQNSNKNEENIVL 76
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT
repeats.
Length = 88
Score = 32.3 bits (74), Expect = 0.42
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 1769 KLLVPLLRCDTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDRKTENMRRRRRRDA 1828
L+ LL+ +VR A ALG + + EL + + + R A
Sbjct: 34 PALLELLKDPDPEVRRAAAEALGKLGDPEALPALLEL-------LQDDDDAVVRAAAASA 86
Query: 1829 LR 1830
L
Sbjct: 87 LA 88
>gnl|CDD|237624 PRK14143, PRK14143, heat shock protein GrpE; Provisional.
Length = 238
Score = 34.3 bits (79), Expect = 0.53
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 16/71 (22%)
Query: 1778 DTTDVRDAVVHALGNINSEALKDLMEELSV-----------YIREAVDRKTENMRRR--R 1824
+ D A + N+ L L +EL Y+R A D +N R+R R
Sbjct: 50 SSPDSGSAASETAAD-NAARLAQLEQELESLKQELEELNSQYMRIAAD--FDNFRKRTSR 106
Query: 1825 RRDALRLQLVR 1835
++ LRLQL
Sbjct: 107 EQEDLRLQLKC 117
>gnl|CDD|131944 TIGR02898, spore_YhcN_YlaJ, sporulation lipoprotein, YhcN/YlaJ
family. YhcN and YlaJ are predicted lipoproteins that
have been detected as spore proteins but not vegetative
proteins in Bacillus subtilis. Both appear to be
expressed under control of the RNA polymerase sigma-G
factor. The YlaJ-like members of this family have a
low-complexity, strongly acidic 40-residue C-terminal
domain that is not included in the seed alignment for
this model. A portion of the low-complexity region
between the lipoprotein signal sequence and the main
conserved region of the protein family was also excised
from the seed alignment [Cellular processes, Sporulation
and germination].
Length = 158
Score = 33.1 bits (76), Expect = 0.73
Identities = 15/47 (31%), Positives = 18/47 (38%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVIFLDKAYKGPSHVAK 669
N NNN N + NNN N N+ D A + S AK
Sbjct: 19 QKKNPPNNNVGETNVMSKNNNGMNTTNDTNDGDLYDVADEIASEAAK 65
Score = 31.6 bits (72), Expect = 2.1
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
+ N NNN N + NNN N N+
Sbjct: 17 NAQKKNPPNNNVGETNVMSKNNNGMNTTNDT 47
>gnl|CDD|177251 MTH00208, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 628
Score = 34.6 bits (80), Expect = 0.73
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVIFLDKA 660
SSN N + +N + NNNNN+ N NN+ I L K
Sbjct: 27 SSNLPNISTSNASLGGNNNNNSIINYNNSNFSISLLKT 64
>gnl|CDD|151365 pfam10918, DUF2718, Protein of unknown function (DUF2718). This
viral family of proteins has no known function.
Length = 140
Score = 32.2 bits (73), Expect = 1.1
Identities = 14/56 (25%), Positives = 16/56 (28%), Gaps = 9/56 (16%)
Query: 615 EAAANPHISSNNNN---------NNNNNNNNNNNNNNNNNNNNNNNPVVIFLDKAY 661
E A P IS NNN N N N N V +K +
Sbjct: 76 EQAEKPPISERNNNGVFDFMKIPNPFKRYYEYCYPYPNKNAKNQPKRVEEKSEKGF 131
>gnl|CDD|218858 pfam06024, DUF912, Nucleopolyhedrovirus protein of unknown function
(DUF912). This family consists of several
Nucleopolyhedrovirus proteins of unknown function.
Length = 101
Score = 31.5 bits (72), Expect = 1.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 625 NNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
N++N++NN N NN + N+ N
Sbjct: 24 NDDNDDNNAPINANNTQSVYPKNDITNE 51
Score = 30.3 bits (69), Expect = 2.6
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 625 NNNNNNNNNNNNNNNNNNNNNNNNNNNPVV 654
N++NN N NN + N+ N ++
Sbjct: 27 NDDNNAPINANNTQSVYPKNDITNEDSNAS 56
Score = 30.3 bits (69), Expect = 2.9
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
++ +N++NN N NN + N+ N +
Sbjct: 23 LNDDNDDNNAPINANNTQSVYPKNDITNEDS 53
Score = 30.0 bits (68), Expect = 4.2
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 624 SNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
+++NN N NN + N+ N ++N
Sbjct: 27 NDDNNAPINANNTQSVYPKNDITNEDSN 54
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 33.8 bits (77), Expect = 1.3
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 618 ANPHISSNNNNNNN--------NNNNNNNNNNNNNNNNNNNNPV 653
+N + N N +N + NN N N NN N++ +P
Sbjct: 450 SNKNKQVNPGNRHNSEDRYTRPHGRNNENRNYNNKNSDIPKHPE 493
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 33.5 bits (76), Expect = 1.4
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 87 LKFYLPLFHVSCLLSVVSYLPVA--ENDNPSVGGGGSVMGDSESRSDVTDGSSQ 138
+KF++PLF + C++ +++ + E+D+ GGG G + DGS
Sbjct: 1 MKFFIPLFFIICVIFIINVIKCRGEEDDDNGNIGGGQAGGTGGDNAGNIDGSPI 54
>gnl|CDD|214945 smart00970, s48_45, Sexual stage antigen s48/45 domain. This
family contains sexual stage s48/45 antigens from
Plasmodium (approximately 450 residues long). These are
surface proteins expressed by Plasmodium male and female
gametes that have been shown to play a conserved and
important role in fertilisation.
Length = 116
Score = 31.3 bits (71), Expect = 1.6
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 10/54 (18%)
Query: 629 NNNNNNNNNNNNNNNNNNNNNNNPVVIFLDKAYKG-------PSHVAKSGRKCF 675
N + NN + + +N++N N I K+ PS+ CF
Sbjct: 8 TNEPSTNNLSYSFLSNDDNVENIECTI---KSKPNDIIGFKCPSNYKLIPPDCF 58
>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded
by an open reading frame in plasmid borne DNA repeats of
Borrelia species. This protein is known as ORF-A. The
function of this putative protein is unknown.
Length = 285
Score = 32.7 bits (75), Expect = 1.8
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 619 NPHISSNNNNNNNNNNNNNNNNNNNNNNNNN 649
N + +N N + N NN NN N
Sbjct: 113 NAYFKKKSNKNGSVEKNECINNKNNVINKKI 143
Score = 32.4 bits (74), Expect = 2.1
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 625 NNNNNNNNNNNNNNNNNNNNNNNNNNNPVVI 655
N +N N + N NN NN I
Sbjct: 113 NAYFKKKSNKNGSVEKNECINNKNNVINKKI 143
Score = 32.0 bits (73), Expect = 2.9
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 624 SNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
+ +N N + N NN NN N
Sbjct: 113 NAYFKKKSNKNGSVEKNECINNKNNVIN 140
Score = 31.6 bits (72), Expect = 3.6
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNNNNNNN 650
+++ +N N + N NN NN N
Sbjct: 112 VNAYFKKKSNKNGSVEKNECINNKNNVIN 140
Score = 31.2 bits (71), Expect = 5.4
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 623 SSNNNNNNNNNNNNNN--NNNNNNNNNNNN 650
+ +N N + N NN NN N
Sbjct: 114 AYFKKKSNKNGSVEKNECINNKNNVINKKI 143
>gnl|CDD|191179 pfam05053, Menin, Menin. MEN1, the gene responsible for multiple
endocrine neoplasia type 1, is a tumour suppressor gene
that encodes a protein called Menin which may be an
atypical GTPase stimulated by nm23.
Length = 618
Score = 32.7 bits (74), Expect = 2.7
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 607 ERQMRPSVEAAANPHISSNNNNNNNNNNNNNN 638
+ PS + NP + +NNNN+N+NNNNNN
Sbjct: 487 SKSQEPSGGESPNPELPANNNNSNSNNNNNNG 518
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved
from plants to fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Mediator subunit
Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast
transcriptional co-repressor.
Length = 381
Score = 32.3 bits (73), Expect = 2.7
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 609 QMRPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
M P + ++ + NN N NN + N+ N P
Sbjct: 267 NMSPMRNLNQMGNQNNGGQMTPSANNGNMNNQSRENSMNQGMTP 310
>gnl|CDD|177060 CHL00138, rps5, ribosomal protein S5; Validated.
Length = 143
Score = 31.1 bits (71), Expect = 2.8
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 629 NNNNNNNNNNNNNNNNNNNNNNNPVVIFLDKAYKGPSHVAKSGRK 673
N N +N N VI + + K V K G+K
Sbjct: 3 FLLKKMYNKKKNRKSNIKENKWEERVIQIKRVSK----VVKGGKK 43
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 32.7 bits (75), Expect = 3.0
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 597 SILRALFAWYER---QMRPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNN 650
L+ALF+ E Q +P+ +A A P + NN + N + +N
Sbjct: 574 GALKALFSGGEETKPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRR 630
>gnl|CDD|132717 cd07061, HP_HAP_like, Histidine phosphatase domain found in histidine
acid phosphatases and phytases; contains a His residue
which is phosphorylated during the reaction. Catalytic
domain of HAP (histidine acid phosphatases) and phytases
(myo-inositol hexakisphosphate phosphohydrolases). The
conserved catalytic core of this domain contains a His
residue which is phosphorylated in the reaction.
Functions in this subgroup include roles in metabolism,
signaling, or regulation, for example Escherichia coli
glucose-1-phosphatase functions to scavenge glucose from
glucose-1-phosphate and the signaling molecules inositol
1,3,4,5,6-pentakisphosphate (InsP5) and inositol
hexakisphosphate (InsP6) are in vivo substrates for
eukaryotic multiple inositol polyphosphate phosphatase 1
(Minpp1). Phytases scavenge phosphate from extracellular
sources and are added to animal feed while prostatic acid
phosphatase (PAP) has been used for many years as a serum
marker for prostate cancer. Recently PAP has been shown
in mouse models to suppress pain by functioning as an
ecto-5prime-nucleotidase. In vivo it dephosphorylates
extracellular adenosine monophosphate (AMP) generating
adenosine,and leading to the activation of A1-adenosine
receptors in dorsal spinal cord.
Length = 242
Score = 31.6 bits (72), Expect = 3.5
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 1047 SASIWTAGIHEDSNRNGSVLN--LSPSCSAPDPWGFCLFQFLQKGRVLTYCPSAVAQAWP 1104
SA + AG+ ++ + + C ++ + KG +C + W
Sbjct: 65 SAQAFLAGLFPPDGWQPIAVHTIPEEEDDVSNLFDLCAYETVAKGYSAPFCDLFTEEEW- 123
Query: 1105 IVYSRLHTL 1113
+ L+ L
Sbjct: 124 VKLEYLNDL 132
Score = 31.6 bits (72), Expect = 3.5
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 1584 SASIWTAGIHEDSNRNGSVLN--LSPSCSAPDPWGFCLFQFLQKGRVLTYCPSAVAQAWP 1641
SA + AG+ ++ + + C ++ + KG +C + W
Sbjct: 65 SAQAFLAGLFPPDGWQPIAVHTIPEEEDDVSNLFDLCAYETVAKGYSAPFCDLFTEEEW- 123
Query: 1642 IVYSRLHTL 1650
+ L+ L
Sbjct: 124 VKLEYLNDL 132
>gnl|CDD|214445 MTH00166, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 160
Score = 30.9 bits (71), Expect = 3.9
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 620 PHISSNNNNNNNNNNNNNNNNNNNNNN---NNNNNPVVIFL 657
+ N+ +N NNN N N+ + + N + +F+
Sbjct: 94 LNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFM 134
>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional.
Length = 540
Score = 31.8 bits (72), Expect = 3.9
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 1716 VVPPVPYPTPRCASPDLSLSWSPENVGGERGGAGVENKPAPTASPPPSP 1764
VV P P PTP +P E AG PAP PPP+P
Sbjct: 159 VVGPRPVPTPPGGTPPPD--------DDEGDEAGAPATPAPPLHPPPAP 199
>gnl|CDD|188873 cd09213, Luminal_IRE1_like, The Luminal domain, a dimerization
domain, of Inositol-requiring protein 1-like proteins.
The Luminal domain is a dimerization domain present in
Inositol-requiring protein 1 (IRE1), eukaryotic
translation Initiation Factor 2-Alpha Kinase 3
(EIF2AK3), and similar proteins. IRE1 and EIF2AK3 are
serine/threonine protein kinases (STKs) and are type I
transmembrane proteins that are localized in the
endoplasmic reticulum (ER). They are kinase receptors
that are activated through the release of BiP, a
chaperone bound to their luminal domains under
unstressed conditions. This results in dimerization
through their luminal domains, allowing
trans-autophosphorylation of their kinase domains and
activation. They play roles in the signaling of the
unfolded protein response (UPR), which is activated when
protein misfolding is detected in the ER in order to
decrease the synthesis of new proteins and increase the
capacity of the ER to cope with the stress. IRE1, also
called Endoplasmic reticulum (ER)-to-nucleus signaling
protein (or ERN), contains an endoribonuclease domain in
its cytoplasmic side and acts as an ER stress sensor. It
is the oldest and most conserved component of the UPR in
eukaryotes. Its activation results in the cleavage of
its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans,
promoting a splicing event that enables translation into
a transcription factor which activates the UPR. EIF2AK3,
also called PKR-like Endoplasmic Reticulum Kinase
(PERK), phosphorylates the alpha subunit of eIF-2,
resulting in the downregulation of protein synthesis. It
functions as the central regulator of translational
control during the UPR pathway. In addition to the eIF-2
alpha subunit, EIF2AK3 also phosphorylates Nrf2, a
leucine zipper transcription factor which regulates
cellular redox status and promotes cell survival during
the UPR.
Length = 312
Score = 31.7 bits (72), Expect = 4.1
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 618 ANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
A S + + + +N N + + +
Sbjct: 278 ALSSPSKSEDKESAISNILEGENTSPSALEGVSGN 312
>gnl|CDD|236275 PRK08486, PRK08486, single-stranded DNA-binding protein;
Provisional.
Length = 182
Score = 31.0 bits (70), Expect = 4.4
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVIFLDKAYKGPSHVAKSGRKCFGTESGPS 682
S+N N +N+ + N NNN N NNP + + A+S + +
Sbjct: 108 KSDNPQANAMQDNSFHENFNNNYPGNYNNP-------SQDPYMNQAQSYNQNAYAKENQQ 160
Query: 683 KI 684
Sbjct: 161 AQ 162
>gnl|CDD|223072 PHA03393, odv-e66, occlusion-derived virus envelope protein E66;
Provisional.
Length = 682
Score = 31.8 bits (73), Expect = 5.0
Identities = 8/35 (22%), Positives = 10/35 (28%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVIF 656
+ +NNNNN N N N
Sbjct: 20 LWQSNNNNNTPNPPNPPPNPPPPPPPPPTPEDYHD 54
>gnl|CDD|169667 PRK09112, PRK09112, DNA polymerase III subunit delta'; Validated.
Length = 351
Score = 31.2 bits (71), Expect = 6.1
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 5 LARPEPQSTIVRTCACIGHPNVLHV--PFVKPPLTEMKTEKAES 46
LA P+P S + R A HPN+LH+ PF + KT K ++
Sbjct: 82 LADPDPASPVWRQIAQGAHPNLLHITRPFDE------KTGKFKT 119
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 31.0 bits (71), Expect = 7.2
Identities = 0/29 (0%), Positives = 5/29 (17%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
+ + + + +
Sbjct: 211 QGDRREERGRRDGGDRRGRRRRRDRRDAR 239
>gnl|CDD|99984 cd03813, GT1_like_3, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid, a
protein, a heterocyclic compound, or another carbohydrate
residue. This group of glycosyltransferases is most
closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in bacteria, while some of them are also found in
Archaea and eukaryotes.
Length = 475
Score = 31.1 bits (71), Expect = 7.9
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 1807 VYIREAVDRKTENMRRRRRRDALRLQLVRVFELIAE 1842
+Y RE RK E ++ R +R FE +
Sbjct: 207 IYTRE---RKIELLQADWEMSYFRRLWIRFFESLGR 239
>gnl|CDD|233909 TIGR02520, pilus_B_mal_scr, type IVB pilus formation outer membrane
protein, R64 PilN family. Several related protein
families encode outer membrane pore proteins for type II
secretion, type III secretion, and type IV pilus
formation. This protein family appears to encode a
secretin for pilus formation, although it is quite
different from PilQ. Members include the PilN lipoprotein
of the plasmid R64 thin pilus, a type IV pilus. Scoring
between the trusted and noise cutoffs are examples of
bundle-forming pilus B (bfpB) [Cell envelope, Surface
structures, Protein fate, Protein and peptide secretion
and trafficking].
Length = 497
Score = 31.0 bits (70), Expect = 8.0
Identities = 23/83 (27%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Query: 1686 LRSSAPPRKPVSERDSFLSLWRYLAIFSARV--VPPVPYPTPRCASPDLSLSWSPENVGG 1743
+ PP S LSL A R VP V P A S S S VG
Sbjct: 20 QQLKLPPCSLTLIIASSLSLSEV-AQRITRSCGVPVVIAPDAMSAL---SGSSSQGGVGA 75
Query: 1744 ERGGAGVENKPAPTASPPPSPTG 1766
R V +P PP
Sbjct: 76 ARAIPAVLPRPDEGGRPPLPSGL 98
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional.
Length = 459
Score = 30.7 bits (69), Expect = 9.5
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 553 EKKLDQVLAEPQ-EKPLSKVLQRGED--PVFDQLLIAFGSVAEHCLPSI----LRALFAW 605
+KKL Q +P KPLS+V + GED P D SV + L + + L A
Sbjct: 113 KKKLRQRGIDPNTHKPLSEV-ENGEDKNPPTDDKSDKASSVVSNELNLLKADNSKPLAAL 171
Query: 606 YERQMRPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVIFLDK 659
E++ A + S++++ NN+NNNN++N+N N + FLD+
Sbjct: 172 QEKRSSSISPAGYQLEVESSSSSKINNSNNNNHSNSNLMTPTPNKD---FFLDR 222
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.407
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 103,863,705
Number of extensions: 10278461
Number of successful extensions: 12116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11384
Number of HSP's successfully gapped: 161
Length of query: 2056
Length of database: 10,937,602
Length adjustment: 112
Effective length of query: 1944
Effective length of database: 5,969,954
Effective search space: 11605590576
Effective search space used: 11605590576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (29.8 bits)