RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7128
(2056 letters)
>3rj1_G Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 295
Score = 121 bits (303), Expect = 5e-30
Identities = 40/173 (23%), Positives = 63/173 (36%), Gaps = 14/173 (8%)
Query: 238 VLHVQEPILYVIRKQHRHSME--------QTTPIADYYIIAGVVYQAPDLASVISSRLLS 289
+ V+EP +VIRKQ R + + P+ DYYII +YQ+P + ++ SRL+S
Sbjct: 117 LSSVREPDFWVIRKQRRTNNSGVGSAKGPEIIPLQDYYIIGANIYQSPTIFKIVQSRLMS 176
Query: 290 TVHHLQSAFEEVNSLSKYNPNKGYSWDSKMLPQGKDTVKKEIIKEEPSSIFQRQRVDMLL 349
T +HL S E + L ++ P++G + T + V
Sbjct: 177 TSYHLNSTLESLYDLIEFQPSQGVHYKVPTDTSTTATAATN--GNNAGGGSNKSSVRPTG 234
Query: 350 SELTRHFPVPPVPQAPQQNTQGNSVPM----RRIENGYFLNVTTVFDNLLQPS 398
P + R NG T + D L+ S
Sbjct: 235 GANMATVPSTTNVNMTVNTMGTGGQTIDNGTGRTGNGNMGITTEMLDKLMVTS 287
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 80.5 bits (198), Expect = 5e-15
Identities = 131/810 (16%), Positives = 210/810 (25%), Gaps = 356/810 (43%)
Query: 687 LRPFRRVQ---EHTVL--HEQYFRLRTKEAETILQERRDLAVEFVFCLILIEVLKQLPFH 741
RP EH +L +F + LQE +F K LP
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIA------SQLQE------QF---------NKILP-E 43
Query: 742 PGHDNLVTYIETVAFKHFKYREGIQNDPNATNIHTVADLYAEVLGVLAQSRFQSVRKRFM 801
P T F ++P A+L + LG ++
Sbjct: 44 P----------TEGFAA-------DDEPTT-----PAELVGKFLG-------------YV 68
Query: 802 SELKELRFKEPNTHTTQSIISLLMGMKFFRVKMVPIEEFEASFQFMQECAQYFTDVKDKD 861
S L E +++L + EFE + ++ D
Sbjct: 69 SSLVE----PSKVGQFDQVLNLC------------LTEFENCY------------LEGND 100
Query: 862 VKHALAGLFVEILVPVAATVKNEVK-FIPIVSSSQGKRRRVRGSESITLGLIDPLRASSN 920
+ HALA ++ K +K + I + KR + S S L RA
Sbjct: 101 I-HALAAKLLQENDTTLVKTKELIKNY--ITARIMAKRPFDKKSNSA-L-----FRAVGE 151
Query: 921 DDIHSECK-------QGLGLEPPTSRSDVQCINHCTTEEP-DEMITGERKPRIDLFRTCV 972
+ + QG T++ +E+ R DL++T
Sbjct: 152 GNA----QLVAIFGGQG------------------NTDDYFEEL----R----DLYQTYH 181
Query: 973 AAVPRLIPDAMTGGELVDLLSRLTLHMDEELRALAYQSLQTLVIDFPDWRHDVLAVFYFG 1032
V LI + ++L L+ D VF G
Sbjct: 182 VLVGDLI-------------------------KFSAETLSELIRTTLDAE----KVFTQG 212
Query: 1033 THDMTIDL-QWIADRSASIWTAGIHEDSNRNGSVLNLSP-SCSAPDPWGFCLFQFLQ--- 1087
+++ +W+ + + + L P SC P + Q
Sbjct: 213 -----LNILEWLEN-----------PSNTPDKDYLLSIPISC--P---LIGVIQLAHYVV 251
Query: 1088 KGRVLTYCPSAVAQAWPIVYSRLHTLFPTIVPFLTTHSFTLISANSFICFPLA---ESLY 1144
++L + P + S L T HS L++A + ES +
Sbjct: 252 TAKLLGFTPGELR-------SYLKG--------ATGHSQGLVTA---VAIAETDSWESFF 293
Query: 1145 RLLWVYMIRIKCESNSATQSRLQSIVNSLFPKGSKAVVPRDTPLNIFVKIIQFIAQERLD 1204
+ I + LF G + E
Sbjct: 294 VSV-RKAITV------------------LFFIGVR-------------------CYE--- 312
Query: 1205 FAMREIVFDLLSVGRPIKLILTPERMSIGLRAFLVVADSLQQKEGEP-PMPRTSGVLPSG 1263
+ S L P ++ DSL+ EG P PM S +
Sbjct: 313 ------AYPNTS--------LPPS----------ILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 1264 NTLRVKKT--YLNKVSKTYLILLLFYRFDGGNCNNRD--VNRGH-SALYRDVCVLPSCET 1318
V KT +L + + L+ N V G +LY
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLV----------NGAKNLVVSGPPQSLY----------- 387
Query: 1319 RVCRYLESVGHPLRASSNDDI----HSECKQVLG----------HAPLVLGPA-PLV--- 1360
+ L +A S D SE K H+ L L PA L+
Sbjct: 388 GLNLTLRKA----KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-LVPASDLINKD 442
Query: 1361 LSPAPLVLDHAHLVL-------GH------ASLVLDNAHLVF-GHAH---LVLGHASLVL 1403
L + + + + G S+ + A+ +L
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 1404 DNAHLVFGHAHSNSNLSNLTRSQVFHQVEG 1433
D FG S L LT +G
Sbjct: 503 D-----FG-PGGASGLGVLTH----RNKDG 522
Score = 62.4 bits (151), Expect = 2e-09
Identities = 110/596 (18%), Positives = 180/596 (30%), Gaps = 212/596 (35%)
Query: 1362 SPAPLV---LDH-AHLV----LGHASLVLDNAHLVFGHAHLVLG---H---ASLVLDN-- 1405
+PA LV L + + LV +G VL+ F + +L G H A L+ +N
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL-EGNDIHALAAKLLQENDT 114
Query: 1406 ----AHLVF-----GHAHSNSNLSNLTRSQVFHQV-EGFALVMLC-----NVRLTPRRLS 1450
+ + + S +F V EG A ++ N
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY----- 169
Query: 1451 VHILREVKMLNKVLGLGLEPPTSRSDVQ-CIDHCTTDVMQCKTHTSETQCSYPTRGENVE 1509
E++ L + T V I + + T + + + +G N+
Sbjct: 170 ---FEELRDLYQ---------TYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-QGLNIL 216
Query: 1510 QSSRLCTQELRNWIRPSEQPPWPSCSEHADQNVIDVIDKACPDILDQCMSQL-----TCA 1564
+ W+ P D++ + I +CP I + QL T
Sbjct: 217 E-----------WLENPSNTP--------DKDYLLSIPISCPLI---GVIQLAHYVVTA- 253
Query: 1565 DKTAALSASCI--DLQWIADRSASIWTAGIHEDSNRNGSVLNLSPSCSAPDPW-GFCLFQ 1621
K + + L+ S + TA + D W F F
Sbjct: 254 -KLLGFTPGELRSYLKGATGHSQGLVTAVA----------------IAETDSWESF--FV 294
Query: 1622 FLQKG-RVLTYCPSAVAQAWPIVYSRLHTLFPTIGKKTSYCALTYYFLLSSLTD----PT 1676
++K VL + +A+P +L P+I L SL + P+
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNT-----SLPPSI-------------LEDSLENNEGVPS 336
Query: 1677 P---VSD-NRASL------LRSSAPPRKPVSERDSFLSLWRYLAIFSAR--VV--PP--- 1719
P +S+ + + S P K V +SL + A+ VV PP
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVE-----ISL-----VNGAKNLVVSGPPQSL 386
Query: 1720 ---VPYPTPRCASPDLSLSWSPENVGGERGGAGVENKPA------PTASPPPSPTGLYKL 1770
A L S P ER K P ASP S L
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIP---FSER-------KLKFSNRFLPVASPFHSH-----L 431
Query: 1771 LVPLLRCDTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDRKT-ENMRRRRRRDAL 1829
LVP D+ V + N++ ++ + VY D ++R +
Sbjct: 432 LVPASDLINKDLVKNNV----SFNAKDIQ-----IPVY-----DTFDGSDLRVLSGSISE 477
Query: 1830 RL--QLVRV---FELIAEHGT-----FGACSPTMPGLLSPLAEYVD------GARL 1869
R+ ++R+ +E + FG PG S L G R+
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFG------PGGASGLGVLTHRNKDGTGVRV 527
Score = 58.1 bits (140), Expect = 4e-08
Identities = 115/743 (15%), Positives = 203/743 (27%), Gaps = 307/743 (41%)
Query: 813 NTHTTQSII--------SLLMGMKFFRVKMVPIEEFEASFQFMQECAQYFTDVKDK---- 860
+ ++T+ + LL VP F + Q ++ + + +
Sbjct: 2 DAYSTRPLTLSHGSLEHVLL----------VPTASFFIASQLQEQFNKILPEPTEGFAAD 51
Query: 861 DVKHALAGLFVEILVPVAATVKNEVKFIPIVSSSQGKRRRVRGSESITLGLIDPLRAS-- 918
D A L + L V++ V+ S G+ +V L
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEP---------SKVGQFDQV-------------LNLCLT 89
Query: 919 -------SNDDIHSECKQGLGLEPPTSRSDVQCINH-----CTTEEPDEMITGERKPRID 966
+DIH+ + L T + I + + P + +K
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD-----KKSNSA 144
Query: 967 LFRTCVAAVPRLIPDAMTGG--ELVDLLSRLTLHMDEELRALAYQSLQTLVIDFPDWRHD 1024
LFR +L+ A+ GG D EELR L YQ+ LV D + +
Sbjct: 145 LFRAVGEGNAQLV--AIFGGQGNTDDYF--------EELRDL-YQTYHVLVGDLIKFSAE 193
Query: 1025 VLAVFYFGTHDMT------IDL-QWIADRSASIWTAGIHEDSNRNGSVLNLSPSCSAPDP 1077
L+ T D +++ +W+ + S + PD
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPS-------------------------NTPDK 228
Query: 1078 WGFCLFQFLQKGRVLTYCPSAVAQAWPIVYSRLHTLFPTIVPFLTTHSFTLISANSFICF 1137
+L P S P I + + +++A
Sbjct: 229 ------DYL------LSIP----------IS-----CPLI--GVIQLAHYVVTAKLLGFT 259
Query: 1138 PLAESLYRLLWVYMIRIKCESNSATQSRLQSIVNSLFPKGSKAVVPRDTPLNIFVKIIQF 1197
P L L Q +V ++ + + ++ K I
Sbjct: 260 P--GELRSYL------------KGATGHSQGLVTAVAIAETDS---WESFFVSVRKAI-- 300
Query: 1198 IAQERLDFAMREIVFDLLSVGRPIKLILTPERMSIGLR---AF-------LVVADSLQQK 1247
++F IG+R A+ ++ DSL+
Sbjct: 301 -----------TVLF------------------FIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 1248 EGEP-PMPRTSGVLPSGNTLRVKKTYLNKVSKTYLILLLFYRFDGGNCNNRDVNRGHSAL 1306
EG P PM L + ++ + +
Sbjct: 332 EGVPSPM------------LSI----------------------------SNLTQEQ--V 349
Query: 1307 YRDVCVLPSCETRVCRYLESVGHPLRASSNDDIHSECKQVLGHAPLVLGPAPLVLSPAPL 1366
V + +L KQV LV G LV+S P
Sbjct: 350 QDYV-------NKTNSHL----------------PAGKQV--EISLVNGAKNLVVSGPPQ 384
Query: 1367 VLDHAHLVL--GHASLVLDNAH-------LVFGHAHLVLG---HASLVLDNAHLVFGHAH 1414
L +L L A LD + L F + L + H+ L++ + L+
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 1415 SNS---NLSNLTRSQVFHQVEG-----------FALV-MLCNVRL----TPRRLSVHILR 1455
N+ N ++ + V+ +G +V + + + T + + HIL
Sbjct: 445 KNNVSFNAKDI-QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL- 502
Query: 1456 EVKMLNKVLG----LGLEPPTSR 1474
G GL T R
Sbjct: 503 -------DFGPGGASGLGVLTHR 518
Score = 50.8 bits (121), Expect = 6e-06
Identities = 80/472 (16%), Positives = 133/472 (28%), Gaps = 159/472 (33%)
Query: 1647 LHTL---FPTIGKKT---SYCALTYYFLLSSLTDPTPVSDNRASLLRSSA---------- 1690
+H L T + + Y + + ++L R+
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 1691 ----PPRKPVSE-RD---SFLSLWRYLAIFSARVVPPVPYPTPRCASP-----DLSLSW- 1736
E RD ++ L L FSA + + T ++ L W
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-LEWL 219
Query: 1737 -SPENVGGERGGAGVENKPAP----TASPPPS-PT-GLYKL----------------LVP 1773
+P P S P S P G+ +L L
Sbjct: 220 ENPS--------------NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 1774 LLRCDTTDVRD---AVVHALGNINSEALKDLME---ELSVYI--R--EAVDRKTENMRRR 1823
L+ T + AV A + + E+ + + +I R EA
Sbjct: 266 YLKGATGHSQGLVTAVAIAETD-SWESFFVSVRKAITVLFFIGVRCYEAY---------- 314
Query: 1824 RRRDALRLQLVRVFELIAEHGTFGACSPTM---PGL-LSPLAEYVDGARLCLELEADKQI 1879
+L ++ E+ G SP M L + +YV+ + L A KQ+
Sbjct: 315 -PNTSLPPSILEDSL---ENN-EGVPSP-MLSISNLTQEQVQDYVN--KTNSHLPAGKQV 366
Query: 1880 LREIKAHFC---NFVCKMIHSFP--LESRQTLLKR-------DLRRNLFSLFTSWAGQYG 1927
EI + N V + P L L++ D R FS
Sbjct: 367 --EI-SLVNGAKNLV---VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS---------E 411
Query: 1928 RNLNITQSY-SVSMP--NP---PASNPGPEALKTSEEELQLTSLSAMSAVLTCGPVFDPS 1981
R L + + V+ P + PAS+ + L + + PV+D
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI--------PVYDTF 463
Query: 1982 T---LLAEDGVLYPWL-DMLLASSE----EKTYQIGCQTVILLLECNPDMGP 2025
L G + + D ++ E T Q ++ D GP
Sbjct: 464 DGSDLRVLSGSISERIVDCII--RLPVKWETTTQFKATHIL-------DFGP 506
Score = 50.4 bits (120), Expect = 8e-06
Identities = 42/255 (16%), Positives = 72/255 (28%), Gaps = 77/255 (30%)
Query: 1839 LIAEHGTFGACSPTMPGLLSPLAEYVDGARL-----------CLELEADKQI--LREIKA 1885
L HG+ LL P A + ++L AD + E+
Sbjct: 9 LTLSHGSL-EHV-----LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 1886 HFCNFVCKMIHSFPLESRQTLLK-------RD-LRRN-----LFSLFTSWAGQYGRNLNI 1932
F +V ++ + +L L N L + +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 1933 TQSY--SVSMPNPPASNPGPEALKTSEEELQLTSLSAMSAVLTCGPVF----DPSTLLAE 1986
++Y + M P AL ++ +A L +F + E
Sbjct: 123 IKNYITARIMAKRPFDKKSNSAL--------FRAVGEGNAQLV--AIFGGQGNTDDYFEE 172
Query: 1987 --DGVLY----PWLDMLLASS-------------EEKTYQIGCQTVILLLECNPDMGPLL 2027
D LY + L+ S EK + G ++ LE NP P
Sbjct: 173 LRD--LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLE-NPSNTP-- 226
Query: 2028 DWVVDRCYTASVQVA 2042
D+ Y S+ ++
Sbjct: 227 ----DKDYLLSIPIS 237
Score = 42.3 bits (99), Expect = 0.002
Identities = 76/495 (15%), Positives = 138/495 (27%), Gaps = 176/495 (35%)
Query: 1576 DLQWIADRSASIWTAGIHEDSNRNGSVLNLSPSCSAPDPWGFCLFQFLQK------GRVL 1629
+L+ + + I + ++ + G + ++L+ L
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 1630 TYCPSAVAQAWPIVYSRLHTLFPTIGKKTSYCALTYYFLLSSLTDPTPVSDNRASLLRSS 1689
P S P IG L +Y + + L TP S L+ +
Sbjct: 232 LSIP----------IS-----CPLIG----VIQLAHYVVTAKLLGFTP--GELRSYLKGA 270
Query: 1690 APPRKPV---------SERDSFLSL-WRYLAI-FSARVVPPVPYPTPRC--ASPDLSLSW 1736
+ + +SF + + + F V RC A P+ SL
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV---------RCYEAYPNTSLP- 320
Query: 1737 SPENVGG-ERGGAGVENKPAPTASPPPSPTGLYKLLVPLLRCDTTDVRDAVVHALGNINS 1795
P + GV PSP +L + + +
Sbjct: 321 -PSILEDSLENNEGV-----------PSP-----MLS---------ISN--------LTQ 346
Query: 1796 EALKDLMEELSVYIREAVDRKTE----NMRRRRRRDALRLQLVRVFELIAEHGTFGACSP 1851
E ++D + + + ++ ++ E N + LV V P
Sbjct: 347 EQVQDYVNKTNSHLPA--GKQVEISLVNGAK---------NLV-V------------SGP 382
Query: 1852 TMPGLLSPLAEYVDGARLCLELEADKQILREIKAHFCN--------FVCKMIHSFPLESR 1903
P L L + A+ L+ + E K F N F HS L
Sbjct: 383 --PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF-----HSHLLVPA 435
Query: 1904 QTLLKRDLRRNLFSLFTSWAGQYGRNLNITQSYSVSMPNPPASNPGPEALKTSEEELQLT 1963
L+ +DL +N S+ + + I Y S+ L+ +
Sbjct: 436 SDLINKDLVKNNV----SFNAKD---IQIPV-YDTF----DGSD-----LRVLSGSI-SE 477
Query: 1964 SLSAMSAVLTCGPV---------------FDPSTLLAEDGVLYPWLDMLLASSEEKTYQI 2008
+ + PV F P L +L +++ T
Sbjct: 478 RIVDC---IIRLPVKWETTTQFKATHILDFGPGGASG--------LGVLTHRNKDGT--- 523
Query: 2009 GCQTVIL-LLECNPD 2022
G + ++ L+ NPD
Sbjct: 524 GVRVIVAGTLDINPD 538
Score = 38.9 bits (90), Expect = 0.025
Identities = 42/214 (19%), Positives = 67/214 (31%), Gaps = 63/214 (29%)
Query: 1781 DVRD-AVVH---ALGNINSEALKDLMEELSVYIREAVDRK-TEN---MRRRRRRDALRLQ 1832
DV + A H G + + + L+++ ++ EN M D +L+
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG-KLK 1702
Query: 1833 LVRVFELIAEHG---TF----GACSPTM---PGLLSPLAEYVDGARLCLELEADKQILRE 1882
++F+ I EH TF G S T P L L E +
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT--LMEKA--------------AFED 1746
Query: 1883 IKAHFCNFVCKMI--HS-------------FPLESRQTLLKRDLRRNLFSLFTSWAGQYG 1927
+K+ HS +ES ++ R + + G
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY---RGMTMQVAVPRDELG 1803
Query: 1928 RNLNITQSYSVSMPNPPASNPGPEALKTSEEELQ 1961
R+ + M A NPG A S+E LQ
Sbjct: 1804 RS-------NYGMI---AINPGRVAASFSQEALQ 1827
Score = 35.0 bits (80), Expect = 0.36
Identities = 44/272 (16%), Positives = 72/272 (26%), Gaps = 119/272 (43%)
Query: 115 SVGGGGSVMG-DSESRSDVTDGSSQVTSRTDCDTPDS--------------SVTVLPWAG 159
G MG D S V +R D D+ ++T+ G
Sbjct: 1628 EQG-----MGMDLYKTSKAAQ---DVWNRADNHFKDTYGFSILDIVINNPVNLTIHF--G 1677
Query: 160 GQRGGRAATCGTAADSGNNVRPGEYVMRSLF---ADFTAQAEKKLDQVLAEPQVQIISKY 216
G++G R +R E +F D + EK ++ + Y
Sbjct: 1678 GEKGKR-------------IR--ENYSAMIFETIVDGKLKTEKIFKEINEH-----STSY 1717
Query: 217 VFH--------TR-------TMSFAIFHTMLYLCLWVLHVQEPILYVIRKQHRHSMEQTT 261
F T+ M A F ++ +
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFE------------------DLKS------KGLI 1753
Query: 262 PIADYYIIAGVV-----YQAPDLAS---VIS-SRLLSTVHH----LQSAFEE-VNSLSKY 307
P + AG Y A LAS V+S L+ V + +Q A S Y
Sbjct: 1754 PADATF--AG--HSLGEYAA--LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 308 -----NPNKGYSWDSKMLPQGKDTVKKEIIKE 334
NP ++ + +++
Sbjct: 1808 GMIAINP-------GRVAASFSQEALQYVVER 1832
Score = 34.3 bits (78), Expect = 0.65
Identities = 23/173 (13%), Positives = 49/173 (28%), Gaps = 46/173 (26%)
Query: 479 DRIGKSQPSRSE-----NEP----HLC-R-MKFVPRDSSVTVLPWAGGQR---------- 517
++ K P +E +EP L + + +V V P GQ
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL----VEPSKVGQFDQVLNLCLTE 90
Query: 518 ------GGR---AATCGTAADSSNNVRPGEYVMRSLFADFTAQAEKKLDQVLAEPQEKPL 568
G A ++ + + ++++ A + + L
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI-----TARIMAKRPFDKKSNSAL 145
Query: 569 SKVLQRGEDPVFDQLLIAFG--SVAEHCLPSILRALFAWYERQMRPSVEAAAN 619
+ + G + FG + LR L+ Y + ++ +A
Sbjct: 146 FRAVGEGNAQLVAI----FGGQGNTDDYFEE-LRDLYQTYHVLVGDLIKFSAE 193
Score = 31.6 bits (71), Expect = 3.9
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 21/91 (23%)
Query: 180 RPGEYVMRSL--FADF----TAQAEKKLDQVLAEPQVQIISKY----VFHT------RTM 223
R ++ R L + F A +++ L + V +K V+ T R +
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 224 SFAIFHTMLYL-----CLWVLHVQEPILYVI 249
S +I ++ W Q +++
Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQFKATHIL 502
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 2e-09
Identities = 97/695 (13%), Positives = 195/695 (28%), Gaps = 247/695 (35%)
Query: 292 HHLQSAFEEVNSLS-KYNPNKGYSWDSKMLPQGKDTVKKEI----IKEEPSSIFQRQRVD 346
HH+ E +Y +L +D +++ P SI ++ +D
Sbjct: 5 HHMDF---ETGEHQYQYK---------DILSVFEDAFVDNFDCKDVQDMPKSILSKEEID 52
Query: 347 MLLSELTRHFPVPPVPQAPQQN--------TQGNSVPMRRIENG----Y-FLNVTTVFDN 393
++ A ++ + + +E Y FL ++ +
Sbjct: 53 HIIMS----------KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL-MSPIKTE 101
Query: 394 LLQPSA----FEEG---------VFHPLNFSSMNEDEN---------DNPSV---GGGG- 427
QPS + E VF N S + +V G G
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 428 --SVMGDSESRSDVTDG--SSQV--TSRTDCDTPGNFVQKEVTLTREI----LSRNRRMK 477
+ + S ++ + +C++P ++ L +I SR+
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 478 EDRI----GKSQPSR-SENEPH---L------------------CRMKFVPRDSSVTVLP 511
++ +++ R +++P+ L C++ R VT
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT--- 278
Query: 512 WAGGQRGGRAATCGTAADSSNNVRPGEYVMRSLFADFTAQAEKKLDQVLAEPQEK----P 567
T + S + P E ++SL + + L P+E P
Sbjct: 279 ---DFLSAATTTHISLDHHSMTLTPDE--VKSLLLKYLDCRPQDL------PREVLTTNP 327
Query: 568 L-----SKVLQRG-------EDPVFDQLLIAFGSVAEHCLPSILRALFAWYERQM---RP 612
++ ++ G + D+L S P+ R +F ++ P
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF----DRLSVFPP 383
Query: 613 SVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPV--VIFLDKAYKGPSHVAKS 670
S HI + + +I+ D V
Sbjct: 384 SA------HIPTI---------------------------LLSLIWFDVIKSDVMVVVN- 409
Query: 671 GRKCFGTESGPSKILMLRPFRRVQEHTV-LHEQYFRLRTKEAETILQERRDLAVEFVFCL 729
K L+ + + +E T+ + Y L+ K R
Sbjct: 410 --KLH------KYSLVEK---QPKESTISIPSIYLELKVKLENEYALHRS---------- 448
Query: 730 ILIE---VLKQLPFH----PGHDNLVTYIETVAFKHFKYREGIQNDPNATNIHTVADLYA 782
+++ + K P D Y + H + H +
Sbjct: 449 -IVDHYNIPKTFDSDDLIPPYLDQ---YF----YSHIGH-------------HLKNIEHP 487
Query: 783 EVLGVLAQSRFQSVRK-----RFMSELKELRFKEPNTHTTQSIISLLMGMKFFRVKMVPI 837
E R R RF+ E K +R + + SI++ L +KF++ +
Sbjct: 488 E--------RMTLFRMVFLDFRFL-EQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 838 E-EFEASF----QFMQECAQYFTDVKDKDVKH-AL 866
+ ++E F+ + + K D+ AL
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Score = 58.3 bits (140), Expect = 3e-08
Identities = 84/636 (13%), Positives = 174/636 (27%), Gaps = 214/636 (33%)
Query: 837 IEEFEASFQFMQECAQYFTDVKDKDVKHALAGLFVEILVPVAATVKNEVKFIPIVSSSQG 896
+ FE +F V + D K ++ + + K E+ I + +
Sbjct: 22 LSVFEDAF------------VDNFDCKDVQ-----DMPKSILS--KEEIDHIIMSKDAVS 62
Query: 897 KRRRV------RGSESITLGLIDPLRASSN---DDIHSECKQGLGLEPPTSR-------- 939
R+ + E + + + LR + I +E +Q T
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP---SMMTRMYIEQRDRL 119
Query: 940 -SDVQCIN--HCTTEEPDEMITG---ERKPRIDLF--------RTCVAA-------VPRL 978
+D Q + + +P + E +P ++ +T VA V
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 979 IPDAM---------TGGELVDLLSRLTLHMD---------------------EELRAL-- 1006
+ + + ++++L +L +D ELR L
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 1007 --AYQ-SLQTLVIDFPD-WRHDVLAVFYFG------THDMTIDLQWIADRSASIWTAGIH 1056
Y+ L LV+ + F T + D ++ T I
Sbjct: 240 SKPYENCL--LVLL--NVQNAKAWNAFNLSCKILLTTRFKQV-----TDFLSAATTTHIS 290
Query: 1057 EDSNRNG-----------SVLNLSPSCSAP-----DPWGFCLFQFLQKGRVLTYCPSAVA 1100
D + L+ P +P + + + T+
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW------ 344
Query: 1101 QAWPIV-YSRLHTLFPTIVPFLTT-------HSFTLISANSFICFPLAESLYRLLWVYMI 1152
W V +L T+ + + L ++ ++ I P L L+W +I
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--P--TILLSLIWFDVI 400
Query: 1153 RIKCESNSATQSRLQSIVNSLFPKGSKAVVPRDT-PLNIFVKIIQFIAQERLD--FAM-R 1208
+ +VN L ++V + I + I + +L+ +A+ R
Sbjct: 401 KSDVMV----------VVNKLH---KYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 1209 EIV--FDLLSVGRPIKLILTPERMSIGLRAFLVVADSLQQKEGEPPMPRTSGVLPSGNTL 1266
IV +++ LI + + L+ E
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYF----YSHIGHHLKNIE------------HPERMT 491
Query: 1267 RVKKTYLNKVSKTYLILLLFYRF-------DGGNCNNR--------DVNRGHSALYRDVC 1311
+ +L+ +RF D N + Y+
Sbjct: 492 LFRMVFLD------------FRFLEQKIRHDSTAWNASGSILNTLQQLK-----FYKPY- 533
Query: 1312 VLPSCETRVCRYLESVGHPLRASSNDDIHSECKQVL 1347
+ + R + ++ L + I S+ +L
Sbjct: 534 ICDNDPKYE-RLVNAILDFLPKIEENLICSKYTDLL 568
Score = 56.0 bits (134), Expect = 1e-07
Identities = 87/641 (13%), Positives = 170/641 (26%), Gaps = 199/641 (31%)
Query: 701 EQYFR--LRTKEAETILQER-RDLAVEFVFCLILIEVLKQLPFHPGHDNLV-TYIETVAF 756
+ + L +E + I+ + +F +L KQ + +V ++E V
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL---SKQ-------EEMVQKFVEEVLR 88
Query: 757 KHFKY-REGIQNDPNATNIHTVADLYAEVLGVLAQSRFQSVRKRFMS----------ELK 805
++K+ I+ + ++ T +Y E L + Q K +S L
Sbjct: 89 INYKFLMSPIKTEQRQPSMMT--RMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 806 ELRFKEPNTHTTQSIISLLMGMKFF-----RVKMVPIEEFEASFQF------MQECAQYF 854
ELR N ++ + G+ + + + + F ++ C
Sbjct: 146 ELR-PAKN------VL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN--- 193
Query: 855 TDVKDKDVKHALAGLFVEILVPVAATVKNEVKFIPIVSSSQGKRRRVRGSESITLGLIDP 914
+ V L L +I + + + S Q + RR+ S+ L+
Sbjct: 194 ---SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV- 249
Query: 915 LRASSNDDIHSECKQGLGLEPPTSRSDVQCIN----HCTTEEPDEMITGERKPRIDLFRT 970
L ++ + + N C ++T K D
Sbjct: 250 L-----LNV----------------QNAKAWNAFNLSCKI-----LLTTRFKQVTDFLSA 283
Query: 971 CVAAVPRLI--PDAMTGGELVDLLSRLTLHMDEELRA-------LAYQSLQTLVIDFPD- 1020
L +T E+ LL + ++L + + D
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 1021 ---WRHDVLAVFYFGTHDMTIDLQWIADRSASIWTAGIHEDSNRNGSVLNLSPSCSAPDP 1077
W+H I+ S+ L P+
Sbjct: 344 WDNWKH-----VNCDKLTTIIES-----------------------SLNVLEPAEYRKMF 375
Query: 1078 WGFCLFQFLQKGRVLTYCPSAVAQAWPI---VYSRLHTLFPTIVPFLTT---HSFTLISA 1131
+F P + I + S + + H ++L+
Sbjct: 376 DRLSVF------------PPSA----HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 1132 NSFICFPLAESLYRLLWVYM-IRIKCESNSATQSRL-QSIVNSLFPKGSKAVVPRD-TPL 1188
ES + +Y+ +++K E+ A L +SIV+ K D P
Sbjct: 420 QP------KESTISIPSIYLELKVKLENEYA----LHRSIVDHY--NIPKTFDSDDLIPP 467
Query: 1189 NIFVKIIQFIA-------QERLDFAMREIVFDLLSVGRPIKLILTPERMSIGLRAFLVVA 1241
+ I R + D F
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---------------------RF---- 502
Query: 1242 DSLQQK--EGEPPMPRTSGVLPSGNTLRVKKTYLNKVSKTY 1280
L+QK + +L + L+ K Y+ Y
Sbjct: 503 --LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Score = 56.0 bits (134), Expect = 1e-07
Identities = 91/658 (13%), Positives = 179/658 (27%), Gaps = 227/658 (34%)
Query: 435 SRSDVTD--GSSQVTSRTD------CDTPGNFVQKEVTLTREILSRN-----RRMKEDRI 481
S+ ++ S S T VQK V E+L N +K ++
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV---EEVLRINYKFLMSPIKTEQR 103
Query: 482 GKSQP--------SRSENEPHLCRMKFVPRDSSVTVLPWAGGQRGGRAATCGTAADSSNN 533
S R N+ + V R L R A
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---------RQALL--------E 146
Query: 534 VRPGEYV----M----RSLFADFTAQAEKKLDQVLAEPQEKPLSKVLQRGEDPVFDQLLI 585
+RP + V + ++ A + KV + + +F +
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSY----------------KVQCKMDFKIF---WL 187
Query: 586 AFGSVAE-HCLPSILRALFAWYERQMRPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNN 644
+ + +L+ L Q+ P+ + SSN ++
Sbjct: 188 NLKNCNSPETVLEMLQKLL----YQIDPNWT--SRSDHSSNIKLRIHSIQAELRR----- 236
Query: 645 NNNNNNNPVVIFLDKAYKG----------PSHVAKSGRKCFGTESGPSKILMLRPFRRV- 693
+ K Y+ C KIL+ F++V
Sbjct: 237 ----------LLKSKPYENCLLVLLNVQNAKAWNAFNLSC--------KILLTTRFKQVT 278
Query: 694 -------QEHTVLHEQYFRLRTKEAETIL-----QERRDLAVEFVFCLILIEVLKQLPFH 741
H L L E +++L +DL EVL P
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---------EVLTTNPRR 329
Query: 742 PGHDNLVTYIETVAFKHFKYREGIQNDPNATNIHTVADLYAEVLGVLAQSRFQSVRKRFM 801
+ +A E I++ D + V + ++ + +
Sbjct: 330 ---------LSIIA-------ESIRDGLATW------DNWKHVN----CDKLTTIIESSL 363
Query: 802 SELK--ELR--FKE-----PNTHTTQSIISLLMGMKFFRVKMVPIEEFEASFQFMQECAQ 852
+ L+ E R F P+ H ++SL+ ++ + + + +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF------DVIKSDVMV----VVNKLHK 413
Query: 853 YFTDVKD-KDVKHALAGLFVEILVPVAATVKNEVKFIPIVSSSQGKRRRVRGSESITLGL 911
Y K K+ ++ +++E+ V + + R +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVK--------------LENEYALHRS----------I 449
Query: 912 ID---PLRASSNDDIHSECKQG-----LGLEPPTSRSDVQCINHCTTEEPDEMITGERKP 963
+D + +DD+ +G +H E E +T R
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIG-------------HHLKNIEHPERMTLFRMV 496
Query: 964 RIDLFRTCVAAVPRLIPDAMTGGELVDLLSRLTL---HMDEELRALAYQSLQTLVIDF 1018
+D FR + G +++ L +L ++ + Y+ L ++DF
Sbjct: 497 FLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP--KYERLVNAILDF 551
Score = 47.5 bits (112), Expect = 5e-05
Identities = 65/412 (15%), Positives = 118/412 (28%), Gaps = 96/412 (23%)
Query: 53 AQSPSMKPPPEKKPAIKDA------------CL-VNRRVWVQYQPRWLKFYLPLFHVSC- 98
++S + +I+ CL V V + F++SC
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---NAKAWN----AFNLSCK 267
Query: 99 -LL-----SVVSYLPVAENDNPSVGGGGSVMGDSESR---SDVTDGSSQVTSRTDCDTPD 149
LL V +L A + S+ + E + D Q D P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-------DLPR 320
Query: 150 SSVTVLPWAGGQRGGRAATCGTAADSGNNVRPGEYVMRSLFADFTAQAEKKLDQVLAEPQ 209
+T P + + + T E L+ + EP
Sbjct: 321 EVLTTNPRR-------LSIIA-ESIRDGLATW-DNWKHVNCDKLTTIIESSLNVL--EPA 369
Query: 210 VQIISKYVFHTRTMSFAIFH-----TMLYLC-LWVLHVQEPILYVIRKQHRHSMEQTTPI 263
+ +F ++F + L +W ++ ++ V+ K H++S+ + P
Sbjct: 370 EY---RKMFD----RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 264 ADYYIIAGVVYQAPDLASVISSRL--LSTVHHLQSAFEEVNSLSKYNPNKGYSWDSKMLP 321
I P + + +L +H + + YN K + D + P
Sbjct: 423 ESTISI-------PSIYLELKVKLENEYALHR--------SIVDHYNIPKTFDSDDLIPP 467
Query: 322 QGKDTV-------KKEIIKEEPSSIFQRQRVDM-LLSELTRHFPVPPVPQAPQQNTQGNS 373
K I E ++F+ +D L + RH NT
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 374 VPMRR----IENGYFLNVTTVFDNLLQPSAFEEGVFHP----LNFSSMNEDE 417
+ + Y V + D L + E + L + M EDE
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIE--ENLICSKYTDLLRIALMAEDE 577
Score = 47.2 bits (111), Expect = 7e-05
Identities = 99/716 (13%), Positives = 186/716 (25%), Gaps = 234/716 (32%)
Query: 998 HMDEELRALAYQSLQTLVIDFPDWRHDVLAVFYFGTHDMTIDLQWIADRSASIWTAGIHE 1057
HMD E YQ L + + + D + + D SI + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDN-------------FDCKDVQDMPKSILSKEEID 52
Query: 1058 DSNRNGSVLNLSPSCSAPDPWGFCLFQFLQKGR--VLTYCPSAVAQAWPIVYSRLHTLFP 1115
++ + S + L K V + + + + S + T
Sbjct: 53 H------IIMSKDAVSGTL---RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT--E 101
Query: 1116 TIVPFLTTHSFTLISANSFICFPLAESLYRLLWVYMIRIKCESNSATQSRLQSIVNSLFP 1175
P + T + + RL + N +F
Sbjct: 102 QRQPSMMTRMY---------------------------------IEQRDRLYN-DNQVFA 127
Query: 1176 KGSKAVVPRDTPLNIFVKIIQFIAQERLDFAMREIVFDLLSVGRPIKLILTPERMSIGLR 1235
K + V R P K+ Q A L A ++ +L G K +
Sbjct: 128 KYN---VSRLQPYL---KLRQ--ALLELRPAKNVLIDGVLGSG---KTWV---------- 166
Query: 1236 AFLVVADSLQQKEGEPPMPRTSGVLPSGNTLRVKKTYLN--KVSKTYLILL----LFYRF 1289
D + + M + +LN + +L L Y+
Sbjct: 167 ----ALDVCLSYKVQCKMDF--KIF-----------WLNLKNCNSPETVLEMLQKLLYQI 209
Query: 1290 DGGNCNNRDVNRGHSALYRDVCVLPSCETRVCRYLESVGHP-----LRASSNDDIHSE-- 1342
D + D HS+ + S + + R L+S + L ++ +
Sbjct: 210 DPNWTSRSD----HSSNIKLRIH--SIQAELRRLLKSKPYENCLLVL-----LNVQNAKA 258
Query: 1343 -------CKQVLGHAPLVLGPAPLVLSPAPLVLD------HAHLVLGHASLVL--DNAHL 1387
CK L+ + V D H+ L H S+ L D
Sbjct: 259 WNAFNLSCKI-------------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 1388 VFGHA---------HLVLGHASLVLDNAHLVFG-----HAHSNSNLSNLTRSQVFHQVEG 1433
+ VL L + + N ++ ++ +E
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLS----IIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 1434 FALVMLCNVRLTP---RRL--SVHILRE-VKMLNKVLGLGLEPPTSRSDVQCI-DHCTTD 1486
V L P R++ + + + +L L + +SDV + +
Sbjct: 362 SLNV------LEPAEYRKMFDRLSVFPPSAHIPTILLSL-IWFDVIKSDVMVVVNKLHKY 414
Query: 1487 VMQCKTHTSETQCSYP-----TRGENVEQSSRLCTQELRNWIRPSEQPPWPSCSEHADQN 1541
+ + E+ S P + + + L I P S+
Sbjct: 415 SL-VEKQPKESTISIPSIYLELKVKLENE------YALHRSIVDHYNIPKTFDSDDL--- 464
Query: 1542 VIDVIDKACPDILDQC--------MSQLTCADKTAALSASCIDLQWIADRSASIWTAGIH 1593
P LDQ + + ++ +D +++ I H
Sbjct: 465 --------IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL---EQKI----RH 509
Query: 1594 EDSNRN--GSVLNL-----------SPSCSAPDPWGFCLFQFLQK-GRVLTYCPSA 1635
+ + N GS+LN + + + FL K L
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Score = 46.8 bits (110), Expect = 9e-05
Identities = 47/281 (16%), Positives = 81/281 (28%), Gaps = 88/281 (31%)
Query: 1761 PPSPTGLYKLLVPLLRCDTTDVRDAVVHALGNINSEALKD----------LMEELSVYIR 1810
+ +G +L LL V+ V L IN + L +M + + R
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-RINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 1811 EAVDRKTE-----NMRRRRRRDALR--LQLVRVFELIAEHGTFG---------ACS---- 1850
+ + + N+ R + LR L +R + + G G C
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 1851 -PTMPG---------------LLSPLAEYVDGARLCLELEADKQILREIKAHFCNFVCKM 1894
M +L L +L +++ + + H N +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEML------QKLLYQIDPNWTSRSD---HSSNIKLR- 226
Query: 1895 IHSFPLESRQTLLKRDLRRNL--------------FS-----LFTSWAGQYGRNLNITQS 1935
IHS E R+ L + L F+ L T+ R +T
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT------RFKQVTDF 280
Query: 1936 YSVSMPNPPASNPGPEALKTSEEELQLTSLSAMSAVLTCGP 1976
S + + + L T +E L + L C P
Sbjct: 281 LSAATTTHISLDHHSMTL-TPDEVKSL-----LLKYLDCRP 315
Score = 44.8 bits (105), Expect = 4e-04
Identities = 77/515 (14%), Positives = 143/515 (27%), Gaps = 141/515 (27%)
Query: 1421 NLTRSQVFHQVEGFALVMLCNVRLTPRRLSVHILREVKMLNKVLGLGLEPPTSRS----D 1476
N++R Q + ++ L +R + + +L G G ++ D
Sbjct: 130 NVSRLQPYLKLRQ----ALLELRPAKN-VLID-----GVL----GSG------KTWVALD 169
Query: 1477 VQCIDHCTTDVMQCKTH-TSETQCSYPTRGENVEQSSRLCTQELRNWIRPSEQPPWPSCS 1535
V C+ + M K + C+ P +E +L Q NW S+
Sbjct: 170 V-CLSYKVQCKMDFKIFWLNLKNCNSP--ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 1536 EHADQNVI-----------------DVIDKACPDILD-QCMSQLTCADK--TAALSASCI 1575
H+ Q + +V + + + C LT K T LSA+
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 1576 DLQWIADRSASIWTAGIHEDSNRN--GSVLNLSPSCSAPDPWGFCLFQFLQKGRVLTYCP 1633
+ S + D ++ L+ P L P
Sbjct: 287 THISLDHHS-----MTLTPDEVKSLLLKYLDCRPQ---------DL-------------P 319
Query: 1634 SAVAQAWPIVYSRLHTLFPTIGKKTSYCALTY-YFLLSSLTDPTPVSDNRASLLRSSAPP 1692
V P S I + T+ + + D +++ SS
Sbjct: 320 REVLTTNPRRLS-------IIAESIRDGLATWDNWKHVNC-------DKLTTIIESSLNV 365
Query: 1693 RKPVSERDSFLSLWRYLAIFSARVVPPVPYPTPRCASPDLSLSWS------PENVGGERG 1746
+P R F L++F +P LSL W V +
Sbjct: 366 LEPAEYRKMF----DRLSVFPPSA--HIPTIL-------LSLIWFDVIKSDVMVVVNK-- 410
Query: 1747 GAGVENKPAPTASPPPSPTGLYKLLVPLLRCDTTDVRDAVVHA--LGNINSEALKD---- 1800
+ P S + + + L+ + + +H + + N D
Sbjct: 411 ---LHKYSLVEKQPKESTISIPSIYL-ELKVKLEN--EYALHRSIVDHYNIPKTFDSDDL 464
Query: 1801 LMEELSVYIREAVDRKTENMRRRRRRDALRLQLVRVF--------ELIAEHGTFGACSPT 1852
+ L Y + +N+ R R VF ++ + + A
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFR----MVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 1853 MPGLLSPLAEYVDGARLCLELEADKQILREIKAHF 1887
+ L L Y +C ++++ I F
Sbjct: 521 LN-TLQQLKFYKP--YICDNDPKYERLVNAIL-DF 551
Score = 38.3 bits (88), Expect = 0.038
Identities = 62/389 (15%), Positives = 114/389 (29%), Gaps = 129/389 (33%)
Query: 1641 PIVYSRLHTLFPTI---GKKTSYCAL------TYYFLLSSLT----DPTPVSDN----RA 1683
S LF T+ ++ + Y FL+S + P+ ++ R
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 1684 SLLRSSAP------PR-KPVSE-RDSFLSL--WRYLAIF----------------SARVV 1717
L + R +P + R + L L + + I S +V
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 1718 PPVPYP-----TPRCASPDLSLS-----WSPENVGGERGGAGVENKPAPTASPPPSPTGL 1767
+ + C SP+ L + N S L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 1768 -----YK--LLVPLLRCDTTDVRDA-VVHALGNINSEAL-----KDLMEELSV--YIREA 1812
Y+ LLV L +V++A +A N++ + L K + + LS +
Sbjct: 238 LKSKPYENCLLV--LL----NVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 1813 VDRKTENMRRRRRRDALRLQL-VRVFELIAEHGTFGACSPTMPGLLSPLAE--------- 1862
+D + + + L L R +L E + T P LS +AE
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-----VLT-TNPRRLSIIAESIRDGLATW 344
Query: 1863 ----YVDGARL------CLE-LEADKQILREIKAHFCNFV-----------------CKM 1894
+V+ +L L LE E + F +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPA-----EYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 1895 IHSFPLE-----SRQTLLKRDLRRNLFSL 1918
I S + + +L+++ + + S+
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Score = 36.4 bits (83), Expect = 0.13
Identities = 87/620 (14%), Positives = 166/620 (26%), Gaps = 209/620 (33%)
Query: 131 DVTDGSSQVTSRTDCD------TPDSSVTVLPWAGGQRGGRAATCGTAADSGNNVRPGEY 184
DV D + S+ + D S L W T + ++
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW-------------TLLSKQEEMVQ-KF 82
Query: 185 VMRSLFADF--------TAQAEKKLDQVLAEPQ-------VQIISKYVFHTRTMSFAIFH 229
V L ++ T Q + + + Q Q+ +KY +R +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLKLR 141
Query: 230 TML-------YLCL--------WVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAG--- 271
L + + + + V + ++ +++
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALD-----VCLS---YKVQCKMDFKIFWLNLKNCN 193
Query: 272 ----VVYQAPDLASVISSRLLSTVHHLQSAFEEVNS----LSKYNPNKGYS--------- 314
V+ L I S H + ++S L + +K Y
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 315 WDS----------KMLPQGKD---------TVKKEIIKEEPSSIFQRQRVDMLLSELTRH 355
++ K+L + I + S V LL +
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 356 FPVPPVPQAPQQNTQGNSVPM------RRIENG-----YFLNV-----TTVFD---NLLQ 396
P++ N P I +G + +V TT+ + N+L+
Sbjct: 314 ----RPQDLPREVLTTN--PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 397 PSAFEEGVFHPLNFSSMNEDENDNPSVGGGGSVMGDSESRSDVTDGSSQVTSRTDCDTPG 456
P+ + + +F S + + + + S D
Sbjct: 368 PAEYRK-MFD--RLSVFPPSAH--------------------IP---TILLSLIWFDVIK 401
Query: 457 NFVQKEVTLTREILSRNRRMKEDRIG--------KSQPSRSENEPHLCRMKFVPRDSSVT 508
+ V V + ++ KE I K + ENE L R V +
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL---ENEYALHR-SIVDHYNIPK 457
Query: 509 VLPWAGGQRGGRAATCGTAADSS----------NNVRPGEYV--MRSLFADFTAQAEKKL 556
N+ E + R +F DF E+K+
Sbjct: 458 TFDSDD---------LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-RFLEQKI 507
Query: 557 DQV-LAEPQEKPLSKVLQRGE---------DPVFDQLLIAFG----SVAEHCLPS----I 598
A + LQ+ + DP +++L+ A + E+ + S +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 599 LR-ALF----AWYE---RQM 610
LR AL A +E +Q+
Sbjct: 568 LRIALMAEDEAIFEEAHKQV 587
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 35.4 bits (82), Expect = 0.044
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 1771 LVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREAV 1813
L+ LL D+ VR +L I E A++ L E + + R+
Sbjct: 78 LIKLLEDDSGFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVA 124
Score = 35.4 bits (82), Expect = 0.052
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 1771 LVPLLRCDTTDVRDAVVHALGNINSEALKDLMEEL---SVYIREAV 1813
+ + VR V AL + EA + L+E L IR A
Sbjct: 17 RGSHMADENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAA 62
Score = 32.3 bits (74), Expect = 0.66
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 1771 LVPLLRCDTTDVRDAVVHALGNINS----EALKDLMEELSVYIREAV 1813
L+ L + +R A +GN E L L+E+ S ++R
Sbjct: 47 LLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGA 93
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 34.6 bits (80), Expect = 0.21
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 1771 LVPLLRCDTTDVRDAVVHALGNINS----EALKDLMEELSVYIREAV 1813
L+ L+ + VR A ALG I E L +++ ++R++
Sbjct: 50 LIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSA 96
Score = 33.1 bits (76), Expect = 0.71
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 1771 LVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREAV 1813
L+ L+ + VR + ALG I E A++ L E + + R+
Sbjct: 143 LIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVA 189
Score = 31.1 bits (71), Expect = 2.5
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 1770 LLVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREAV 1813
L+ L+ + VR A ALG I E L +++ ++R++
Sbjct: 111 PLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSA 158
Score = 29.6 bits (67), Expect = 8.0
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 1771 LVPLLRCDTTDVRDAVVHALGNINS----EALKDLMEELSVYIREA 1812
L+ L+ + VR + ALG I E L +++ ++R A
Sbjct: 81 LIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIA 126
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 34.3 bits (79), Expect = 0.28
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 1771 LVPLLRCDTTDVRDAVVHALGNINS----EALKDLMEELSVYIREAV 1813
L+ L+ + VR A ALG I E L +++ ++R++
Sbjct: 55 LIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSA 101
Score = 32.7 bits (75), Expect = 0.88
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 1771 LVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREAV 1813
L+ L+ + VR + ALG I E A++ L E + + R+
Sbjct: 148 LIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVA 194
Score = 31.6 bits (72), Expect = 2.1
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 1770 LLVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREAV 1813
L+ L+ + VR A ALG I E L +++ ++R++
Sbjct: 116 PLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSA 163
Score = 30.0 bits (68), Expect = 5.4
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 1771 LVPLLRCDTTDVRDAVVHALGNINS----EALKDLMEELSVYIREAV 1813
L+ L+ + VR + ALG I E L +++ ++R A
Sbjct: 86 LIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAA 132
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 34.7 bits (78), Expect = 0.41
Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 6/129 (4%)
Query: 1767 LYKLLVPLLRCDTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDRKTENMRRRRRR 1826
+ L+P L VR + ALG++ + +L ++ + + R
Sbjct: 176 ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYI 235
Query: 1827 DALRLQLVRVFELIAEHGTFGACSPTMPGLLSPLAEYVDGARLCLELEADKQILREIKAH 1886
+ + I E+ +P ++ D R ++A + +R
Sbjct: 236 QCIAAISRQAGHRIGEY-----LEKIIPLVVKFCNVDDDELREYC-IQAFESFVRRCPKE 289
Query: 1887 FCNFVCKMI 1895
V +I
Sbjct: 290 VYPHVSTII 298
>3n7l_A Neurotoxin; HCR/D-SA, ganglioside binding loop; 2.00A {Clostridium
botulinum} PDB: 3azw_A 3azv_A 3n7m_A 3n7k_A 3r4s_A*
3r4u_A
Length = 424
Score = 33.8 bits (76), Expect = 0.60
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 14/71 (19%)
Query: 618 ANPHISSNNNNNNNNNNNNNNNNNNNN-------NNNNNNNPV----VIFLDKAYKGPSH 666
N ++S N N NNN+ N N N+ V V++ + +
Sbjct: 255 MNRYMSKKGNGIVFNTRKNNNDFNEGYKIIIKRIRGNTNDTRVRGENVLYFNTTIDNKQY 314
Query: 667 ---VAKSGRKC 674
+ K R
Sbjct: 315 SLGMYKPSRNL 325
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 1.1
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 42 EKAESKGNTEAAQSPSMKP-PPEKKPAI 68
EK K +A S+K + PA+
Sbjct: 18 EKQALK-KLQA----SLKLYADDSAPAL 40
>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase, alpha-amylase
FAMI acarbose, transferase; HET: ACR; 1.90A {Thermus
aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A* 1fp8_A 1fp9_A
2owc_A* 2oww_A* 2owx_A* 2x1i_A*
Length = 500
Score = 32.7 bits (75), Expect = 1.3
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 19/97 (19%)
Query: 963 PRIDLFRTCVAAVPRLIPDAMTGGELVDLLSRLTLHMDEELRALAYQSLQTLVIDFPD-- 1020
P LF+ + A + L +T ++ ++ L F D
Sbjct: 320 PGEKLFQKIQEVFGEVPVLA-------EDLGVITPEVEALRDRFGLPGMKVLQFAFDDGM 372
Query: 1021 --------WRHDVLAVFYFGTHDM-TIDLQWIADRSA 1048
+ V Y GTHD T L W +
Sbjct: 373 ENPFLPHNYPAHGRVVVYTGTHDNDTT-LGWYRTATP 408
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia
chrysanthemi} SCOP: b.80.1.9
Length = 400
Score = 32.1 bits (72), Expect = 2.2
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 621 HISSNNNNNNNNNNNNNNNNNNNNNNNNNN 650
H NN + + + +N + +N+ +
Sbjct: 308 HYFRNNVSLSASVTVSNADAKSNSWDTGPA 337
Score = 30.5 bits (68), Expect = 6.5
Identities = 5/45 (11%), Positives = 15/45 (33%)
Query: 619 NPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVIFLDKAYKG 663
N + NN + + + +N + +N+ + +
Sbjct: 301 NVQSGQKHYFRNNVSLSASVTVSNADAKSNSWDTGPAASASDFVS 345
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 31.7 bits (72), Expect = 2.5
Identities = 6/42 (14%), Positives = 10/42 (23%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVIFLDKAYKGP 664
S + N + + + NP D K
Sbjct: 257 ESPEYFKDKCNGECSCLSEYFKDETRWKNPYETLDDTEVKNN 298
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein
structure initiative, midwest center for structural
genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP}
SCOP: a.4.1.9 a.121.1.1
Length = 203
Score = 30.9 bits (70), Expect = 2.9
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 1820 MRRRRRRDALRLQLVR-VFELIAEHG 1844
MR RR +L +F++ AE G
Sbjct: 1 MRERRYSSTSPERLAAALFDVAAESG 26
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens}
SCOP: a.118.1.24
Length = 457
Score = 31.7 bits (71), Expect = 3.0
Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 6/117 (5%)
Query: 1769 KLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDLMEELSVYIREAVD--RKTENMRRRR 1824
LV LLR +V+ A AL N+ S K + IREAV R+T N ++
Sbjct: 47 CKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNG-IREAVSLLRRTGNAEIQK 105
Query: 1825 RRDALRLQLVRVFELIAEHGTFGACSPTMPGLLSPLAEYVDGARLCLELEADKQILR 1881
+ L L EL E A ++ P + + DG D ++
Sbjct: 106 QLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 31.1 bits (70), Expect = 3.8
Identities = 9/41 (21%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 1766 GLYKLLVPLLRCDTTDVRDAVVHALGNI---NSEALKDLME 1803
G+ + LV L+R + + + V+ AL ++ + +++ E
Sbjct: 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE 249
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 30.8 bits (69), Expect = 4.4
Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 17/103 (16%)
Query: 1761 PPSPTGLYKLLVPLLRCDTTDVRDAVVHALGNI---NSEALKDLMEELSVYIREAVDRKT 1817
P + +L R + V +AL I N + ++ + +
Sbjct: 102 PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSS------ 155
Query: 1818 ENMRRRRRRDALRLQLVRVFELIAEHGTFGACSPTMPGLLSPL 1860
+ +L + E + E+ F +P +P +++ L
Sbjct: 156 -------KNREDKLTALNFIEAMGENS-FKYVNPFLPRIINLL 190
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 30.9 bits (70), Expect = 4.5
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 1770 LLVPLLRCDTTDVRDAVVHALGNINSE-ALKDLMEELS 1806
V +L+ +VR + L + L L +EL
Sbjct: 196 CFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELK 233
Score = 30.2 bits (68), Expect = 7.0
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 1770 LLVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREA 1812
+T+VR A A+ IN + L +L+++ + +R
Sbjct: 132 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNW 178
Score = 30.2 bits (68), Expect = 7.3
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 4/47 (8%)
Query: 1771 LVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIREAV 1813
L LL + R + L + + + + R+
Sbjct: 28 LFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIG 74
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 30.7 bits (70), Expect = 4.5
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 1769 KLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDLMEE 1804
LV LL + + AL NI K ++E
Sbjct: 183 PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 220
>3pme_A Type C neurotoxin; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, botulinum
neurotoxin; 1.56A {Clostridium botulinum} PDB: 3ogg_A
3n7j_A 3obr_A 3obt_A* 3rmx_A 3rmy_A
Length = 420
Score = 31.1 bits (69), Expect = 4.5
Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 11/63 (17%)
Query: 619 NPHISSNNNNNNNNNNNNNNNN-----------NNNNNNNNNNNPVVIFLDKAYKGPSHV 667
+ +I+ NN ++ + N N + N I Y ++
Sbjct: 246 DRYIAPKNNILVLVQYSDISKLYTKNPITIKSAANKNPYSRILNGDDIMFHMLYDSREYM 305
Query: 668 AKS 670
Sbjct: 306 IIR 308
>1cb8_A Protein (chondroitinase AC); lyase, chondroitin degradation; HET: MAN
RAM GCU MFU; 1.90A {Pedobacter heparinus} SCOP: a.102.3.2
b.24.1.1 b.30.5.2 PDB: 1hm2_A* 1hm3_A* 1hmu_A* 1hmw_A*
Length = 678
Score = 31.2 bits (70), Expect = 4.6
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 966 DLFRTCVAAVPRLIPDAMTGGELVDL----LSRLTLHMDEELRALAYQSLQTLVIDFPDW 1021
L + R P+ TG D+ R L DE L + A + L + F +
Sbjct: 132 ALVHKLTERMKRGEPEKKTGANKTDIALHYFYRALLTSDEALLSFAVKELFY-PVQFVHY 190
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle,
antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9
a.121.1.1 PDB: 1ui6_A
Length = 215
Score = 30.4 bits (69), Expect = 4.9
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 1820 MRRRRRRDALRLQLVRV-FELIAEHGTFGACS 1850
M R+ R + R ++ +L G + + +
Sbjct: 1 MARQLRAEQTRATIIGAAADLFDRRG-YESTT 31
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor
immunomodulator, TNF alpha receptor; 2.0A {Vaccinia
virus}
Length = 142
Score = 29.7 bits (66), Expect = 5.5
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 924 HSECKQGLGLEPPTSRSDVQC 944
++C +G G + + C
Sbjct: 104 KTKCGRGYGKKGEDEMGNTIC 124
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de
novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 29.9 bits (68), Expect = 7.1
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 1766 GLYKLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDLMEE 1804
G LV LL + + AL NI K ++E
Sbjct: 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 178
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family
transcriptional regulator, structural genom 2, RHA08332,
MCSG; 2.20A {Rhodococcus SP}
Length = 207
Score = 29.7 bits (67), Expect = 7.4
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 1821 RRRRRRDALRLQLVRV-FELIAEHG 1844
R RR + ++ V EL E G
Sbjct: 10 RIGRRPSTTQDRISTVGIELFTEQG 34
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional
repressor, transcription-transc inhibitor complex; HET:
LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A*
3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A*
1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Length = 236
Score = 29.9 bits (67), Expect = 7.8
Identities = 10/51 (19%), Positives = 16/51 (31%)
Query: 1796 EALKDLMEELSVYIREAVDRKTENMRRRRRRDALRLQLVRVFELIAEHGTF 1846
L L++ + A+ EN R + R + FE H
Sbjct: 90 AVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAV 140
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo sapiens}
PDB: 3tj3_A
Length = 450
Score = 30.2 bits (68), Expect = 7.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1765 TGLYKLLVPLLRCDTTDVRDAVVHALGNI 1793
G+ + LV LL + V + A+GNI
Sbjct: 233 AGVCRRLVELLMHNDYKVVSPALRAVGNI 261
Score = 30.2 bits (68), Expect = 7.9
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1766 GLYKLLVPLLRCDTTDVRDAVVHALGNI--NSEALKDL 1801
G + + LL + DV++ V ALGNI +S +D
Sbjct: 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT
family, transcriptional repressor, DNA-binding; HET: RF1;
1.85A {Mycobacterium tuberculosis}
Length = 255
Score = 29.5 bits (66), Expect = 9.6
Identities = 10/51 (19%), Positives = 16/51 (31%)
Query: 1796 EALKDLMEELSVYIREAVDRKTENMRRRRRRDALRLQLVRVFELIAEHGTF 1846
L L++ + A+ EN R + R + FE H
Sbjct: 89 AVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAV 139
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces
coelicolor A3, structural genomics, PSI-2; 2.30A
{Streptomyces coelicolor}
Length = 260
Score = 29.4 bits (66), Expect = 9.9
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 1821 RRRRRRDALRLQLVRV-FELIAEHG 1844
R R++ R + + LI + G
Sbjct: 41 LRERKKTRTREAIRAATYGLIRQQG 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.407
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 30,874,752
Number of extensions: 1880648
Number of successful extensions: 4186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4122
Number of HSP's successfully gapped: 76
Length of query: 2056
Length of database: 6,701,793
Length adjustment: 108
Effective length of query: 1948
Effective length of database: 3,686,325
Effective search space: 7180961100
Effective search space used: 7180961100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.4 bits)