RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7128
(2056 letters)
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 37.0 bits (84), Expect = 0.028
Identities = 36/336 (10%), Positives = 85/336 (25%), Gaps = 8/336 (2%)
Query: 1483 CTTDVMQCKTHTSETQCSYPTRGENVEQSSRLCTQELRNWIRPSEQPPWPSCSEHADQNV 1542
D+ Q + + S L R + + +
Sbjct: 574 KAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIA 633
Query: 1543 IDVIDKACPDILDQCMSQLTCADKTAALSASCIDLQWIADRSASIWTAGIHEDSNRNGSV 1602
+ +L + + L + + L + I + +V
Sbjct: 634 GSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSAL---DILIKNYSDSLTAAMIDAV 690
Query: 1603 LNLSPSCSAPDPWGFCLFQFLQKGRVLTYCPSAVAQAWPIVYSRLHTLF--PTIGKKTSY 1660
L+ P + + PS++++ + + L L P +
Sbjct: 691 LDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALS 750
Query: 1661 CALTYYFLLSSLTDPTPVSDNRASLLRSSAPPRKPVSERDSFLSLWRYLAIFSARVVPPV 1720
L ++ L + +L + +A A +
Sbjct: 751 AMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYS---IAKCVAALTRAC 807
Query: 1721 PYPTPRCASPDLSLSWSPENVGGERGGAGVENKPAPTASPPPSPTGLYKLLVPLLRCDTT 1780
P P + + + R A + L +++ +
Sbjct: 808 PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSE 867
Query: 1781 DVRDAVVHALGNINSEALKDLMEELSVYIREAVDRK 1816
+V+ A +ALG+I+ L + + + I R+
Sbjct: 868 EVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQ 903
Score = 28.9 bits (63), Expect = 9.4
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 1767 LYKLLVPLLRCDTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDRKTENMRRRRRR 1826
+ L+P L VR + ALG++ + +L I + ++N R
Sbjct: 173 ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL---IEHLLSELSKNDSMSTTR 229
Query: 1827 DALRL 1831
++
Sbjct: 230 TYIQC 234
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 35.2 bits (79), Expect = 0.082
Identities = 30/277 (10%), Positives = 81/277 (29%), Gaps = 21/277 (7%)
Query: 1766 GLYKLLVPLLRCDTTDVRDAVVHALGNI---NSEALKDLMEELSVYIREAVDRKTENMRR 1822
G LV LLR +V+ A AL N+ ++ + + + ++ R+T N
Sbjct: 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEI 103
Query: 1823 RRRRDALRLQLVRVFELIAEHGTFGACSPTMPGLLSPLAEYVDGARLCLELEADKQILRE 1882
+++ L L + + + E A ++ P + + DG D ++
Sbjct: 104 QKQLTGL-LWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162
Query: 1883 IK----------------AHFCNFVCKMIHSFPLESRQTLLKRDLRRNLFSLFTSWAGQY 1926
++ + ++ + N + + + +
Sbjct: 163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRL 222
Query: 1927 GRNLNITQSYSVSMPNPPASNPGPEALKTSEEELQLTSLSAMSAVLTCGPVFDPSTLLAE 1986
+ + +++ + + + + S L
Sbjct: 223 DAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNN-YDCPLPEEETNPKGSGWLYH 281
Query: 1987 DGVLYPWLDMLLASSEEKTYQIGCQTVILLLECNPDM 2023
+ +L+++ S ++ T + + L M
Sbjct: 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 33.3 bits (74), Expect = 0.28
Identities = 11/132 (8%), Positives = 29/132 (21%), Gaps = 5/132 (3%)
Query: 1771 LVPLLRCDTTDVRDAVVHALGNINSE----ALKDLMEELSVYIRE-AVDRKTENMRRRRR 1825
L LL + R + L + + + + R+ + ++
Sbjct: 24 LFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 83
Query: 1826 RDALRLQLVRVFELIAEHGTFGACSPTMPGLLSPLAEYVDGARLCLELEADKQILREIKA 1885
D + L + + Y ++ A + +A
Sbjct: 84 EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRA 143
Query: 1886 HFCNFVCKMIHS 1897
+
Sbjct: 144 TAFAISVINDKA 155
>d1dlya_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Green alga
(Chlamydomonas eugametos) [TaxId: 3054]}
Length = 121
Score = 31.1 bits (70), Expect = 0.45
Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 11/81 (13%)
Query: 182 GEYVMRSLFADFTAQAEKKLDQVLAEPQVQIISKYVFHTRTMSFAIFHTMLYLCLWVLHV 241
G + + F ++++A+P V F M +L +
Sbjct: 8 GREAVEAAVDKF-------YNKIVADPTV----STYFSNTDMKVQRSKQFAFLAYALGGA 56
Query: 242 QEPILYVIRKQHRHSMEQTTP 262
E +R H+ + +
Sbjct: 57 SEWKGKDMRTAHKDLVPHLSD 77
>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human
coxsackievirus A9 [TaxId: 12067]}
Length = 320
Score = 31.7 bits (72), Expect = 0.87
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNN 648
S+ + + + N+ + N N
Sbjct: 5 STQKTGAHETSLSAAGNSIIHYTNIN 30
Score = 30.2 bits (68), Expect = 2.4
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 624 SNNNNNNNNNNNNNNNNNNNNNNNNN 649
S + + + N+ + N N
Sbjct: 5 STQKTGAHETSLSAAGNSIIHYTNIN 30
Score = 29.4 bits (66), Expect = 4.3
Identities = 3/27 (11%), Positives = 9/27 (33%)
Query: 625 NNNNNNNNNNNNNNNNNNNNNNNNNNN 651
+ + + + N+ + N N
Sbjct: 4 VSTQKTGAHETSLSAAGNSIIHYTNIN 30
>g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type
3, strain Sabin [TaxId: 12086]}
Length = 334
Score = 31.3 bits (71), Expect = 1.1
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNN 648
SS + N+N + N N
Sbjct: 5 SSQKVGAHENSNRAYGGSTINYTTIN 30
Score = 30.2 bits (68), Expect = 3.1
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 624 SNNNNNNNNNNNNNNNNNNNNNNNNN 649
S+ + N+N + N N
Sbjct: 5 SSQKVGAHENSNRAYGGSTINYTTIN 30
Score = 29.0 bits (65), Expect = 5.7
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNNNN 650
+ N+N + N N ++
Sbjct: 8 KVGAHENSNRAYGGSTINYTTINYYKDS 35
Score = 29.0 bits (65), Expect = 5.8
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 625 NNNNNNNNNNNNNNNNNNNNNNNNNNN 651
++ + N+N + N N
Sbjct: 4 VSSQKVGAHENSNRAYGGSTINYTTIN 30
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 28.7 bits (64), Expect = 1.9
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 1813 VDRKTENMRRRRRRDALRLQLVRVFELIAEHGTFGACSPTMPGLLSPLAEYVDGARLCL- 1871
V R+T N+ R+RR+ L+ + + I +L Y+ +
Sbjct: 5 VKRRTHNVLERQRRNELKRSFFALRDQI--PELENNEKAPKVVILKKATAYILSVQAEEQ 62
Query: 1872 ELEADKQILRE 1882
+L +++ +LR+
Sbjct: 63 KLISEEDLLRK 73
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 304
Score = 30.7 bits (68), Expect = 1.9
Identities = 12/79 (15%), Positives = 22/79 (27%)
Query: 1521 NWIRPSEQPPWPSCSEHADQNVIDVIDKACPDILDQCMSQLTCADKTAALSASCIDLQWI 1580
N R S P + D+ I VID+ L + + +
Sbjct: 51 NAFRTSHYPYAEEVMQMCDRYGIVVIDECPGVGLALPQFFNNVSLHHHMQVMEEVVRRDK 110
Query: 1581 ADRSASIWTAGIHEDSNRN 1599
+ +W+ S+
Sbjct: 111 NHPAVVMWSVANEPASHLE 129
>d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus [TaxId:
63363]}
Length = 485
Score = 30.8 bits (69), Expect = 2.1
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 14/95 (14%)
Query: 960 ERKPRIDLFRTCVAAVPRLIPDAMTGGELVDLLSRLTLHMDEELRALAYQSLQTLVIDFP 1019
+ P LF+ ++ P+ + + L +T + + + F
Sbjct: 310 VKAPGKTLFKKLLSYFPKNPF-------IAEDLGFITDEVRYLRETFKIPGSRVIEFAFY 362
Query: 1020 DWR-------HDVLAVFYFGTHDMTIDLQWIADRS 1047
D + V+Y THD+ W +
Sbjct: 363 DKESEHLPHNVEENNVYYTSTHDLPPIRGWFENLG 397
>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 30.1 bits (66), Expect = 2.5
Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 2/141 (1%)
Query: 537 GEYVMRSLFADFTAQAEKKLDQVLAEPQEKPLSKVLQRGEDPVFDQLLIAFGSVAEHCLP 596
EYV L FT + K+ E E +K L+ +D +D ++ + V +
Sbjct: 10 TEYVPPGLLEQFTKETGIKVIYSTYESNETMYAK-LKTYKDGAYDLVVPSTYYVDKMRKE 68
Query: 597 SILRALFAWYERQMRPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVV-I 655
+++ + N NN+ + N + + +
Sbjct: 69 GMIQKIDKSKLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWAD 128
Query: 656 FLDKAYKGPSHVAKSGRKCFG 676
YKG + R+ F
Sbjct: 129 LWKPEYKGSLLLTDDAREVFQ 149
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium
botulinum, serotype B [TaxId: 1491]}
Length = 218
Score = 29.9 bits (66), Expect = 2.6
Identities = 4/37 (10%), Positives = 13/37 (35%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVIFLD 658
+S + N+ N ++ N+ + + +
Sbjct: 16 LSGYGAKVEVYDGVELNDKNQFKLTSSANSKIRVTQN 52
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi
[TaxId: 556]}
Length = 400
Score = 30.1 bits (66), Expect = 2.8
Identities = 4/34 (11%), Positives = 13/34 (38%)
Query: 622 ISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVI 655
+ NN + + + +N + +N+ +
Sbjct: 305 GQKHYFRNNVSLSASVTVSNADAKSNSWDTGPAA 338
Score = 30.1 bits (66), Expect = 3.1
Identities = 6/43 (13%), Positives = 16/43 (37%)
Query: 616 AAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVIFLD 658
+ H NN + + + +N + +N+ + F+
Sbjct: 303 QSGQKHYFRNNVSLSASVTVSNADAKSNSWDTGPAASASDFVS 345
Score = 30.1 bits (66), Expect = 3.3
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 619 NPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
++ S + NN + + + +N + +N+
Sbjct: 299 GSNVQSGQKHYFRNNVSLSASVTVSNADAKSNS 331
>d1epwa2 b.42.4.2 (A:1080-1290) Botulinum neurotoxin {Clostridium
botulinum, serotype B [TaxId: 1491]}
Length = 211
Score = 29.5 bits (66), Expect = 3.4
Identities = 6/41 (14%), Positives = 13/41 (31%), Gaps = 4/41 (9%)
Query: 619 NPHISSNNNNNNNNNNNNNNNNNNNNNNNNNN----NPVVI 655
N +I ++ + N N+ N + +I
Sbjct: 27 NSYIKLKKDSPVGEILTRSKYNQNSKYINYRDLYIGEKFII 67
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId:
3847]}
Length = 304
Score = 29.7 bits (66), Expect = 3.6
Identities = 27/159 (16%), Positives = 45/159 (28%), Gaps = 23/159 (14%)
Query: 1543 IDVIDKACPDILDQCMSQLTCADKTAALSASCIDLQWIADRSASIWTAG----------I 1592
+DV++ + + C ++CA D+ IA AS+ G
Sbjct: 77 LDVVNDIKTAVENSCPDTVSCA-----------DILAIAAEIASVLGGGPGWPVPLGRRD 125
Query: 1593 HEDSNRNGSVLNLSPSCSAPDPW--GFCLFQFLQKGRVLTYCPSAVAQAWPIVYSRLHTL 1650
+NR + NL F + V +A +
Sbjct: 126 SLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFINRLYN 185
Query: 1651 FPTIGKKTSYCALTYYFLLSSLTDPTPVSDNRASLLRSS 1689
F G TY +L + DN +L S+
Sbjct: 186 FSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLST 224
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 132
Score = 28.6 bits (64), Expect = 3.7
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 1556 QCMSQLTCADKTAALSASCIDLQWIADRSASIWTAGI 1592
+ S +TCAD T A I + + + AG+
Sbjct: 13 EKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGL 49
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 29.1 bits (64), Expect = 3.7
Identities = 9/56 (16%), Positives = 20/56 (35%)
Query: 219 HTRTMSFAIFHTMLYLCLWVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVY 274
R + + I + L + + + +M+Q P+ D+Y G +
Sbjct: 103 IGRKLDYVIHIDVRQDVLMERLTADDNEATVANRLEVNMKQMKPLVDFYEQKGYLR 158
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 29.2 bits (64), Expect = 3.9
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 215 KYVFHTRTMSFAIFHTMLYLCLWVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVY 274
K+V + +L + + I+K+ QT + D+Y V
Sbjct: 112 KFVLFFDCPEEVMTQRLLKRG-ESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVK 170
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 29.1 bits (64), Expect = 4.0
Identities = 8/59 (13%), Positives = 18/59 (30%)
Query: 216 YVFHTRTMSFAIFHTMLYLCLWVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIAGVVY 274
R + + + L + + + +M QT P+ +Y V+
Sbjct: 100 LADMGRKIEHVLNIQVEKEELIARLTADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLV 158
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 29.1 bits (64), Expect = 4.0
Identities = 7/58 (12%), Positives = 19/58 (32%)
Query: 210 VQIISKYVFHTRTMSFAIFHTMLYLCLWVLHVQEPILYVIRKQHRHSMEQTTPIADYY 267
+ + + + + + V++ +RK+ + T P+ YY
Sbjct: 90 IPQADAMKEAGINVDYVLEFDVPDELIVDRIVKDDQEETVRKRLVEYHQMTAPLIGYY 147
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 111
Score = 28.4 bits (62), Expect = 4.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 1781 DVRDAVVHALGNINSEALKDLMEELS 1806
VR V AL + EA + L+E LS
Sbjct: 7 WVRRDVSTALSRMGDEAFEPLLESLS 32
>g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human
rhinovirus 16, (HRV-16) [TaxId: 31708]}
Length = 296
Score = 29.4 bits (66), Expect = 4.5
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 623 SSNNNNNNNNNNNNNNNNNNNNNNNN 648
S N ++ N +N ++ N N N
Sbjct: 5 SRQNVGTHSTQNMVSNGSSLNYFNIN 30
Score = 28.2 bits (63), Expect = 9.7
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 624 SNNNNNNNNNNNNNNNNNNNNNNNNN 649
S N ++ N +N ++ N N N
Sbjct: 5 SRQNVGTHSTQNMVSNGSSLNYFNIN 30
>d1epwa3 d.92.1.7 (A:1-533) Botulinum neurotoxin {Clostridium
botulinum, serotype B [TaxId: 1491]}
Length = 533
Score = 29.5 bits (66), Expect = 4.6
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 619 NPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNN 651
N I N +N N+ N + + +
Sbjct: 469 NERIEYNTQSNYIENDFPINELILDTDLISKIE 501
Score = 29.5 bits (66), Expect = 4.7
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 625 NNNNNNNNNNNNNNNNNNNNNNNNNNNP 652
N +N N+ N + + +
Sbjct: 473 EYNTQSNYIENDFPINELILDTDLISKI 500
Score = 28.7 bits (64), Expect = 7.9
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 620 PHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVI 655
+S +++ + N N +N N+ N +++
Sbjct: 457 ADKNSFSDDLSKNERIEYNTQSNYIENDFPINELIL 492
>d1yq2a5 c.1.8.3 (A:313-609) beta-Galactosidase, domain 3
{Arthrobacter sp. c2-2 [TaxId: 192168]}
Length = 297
Score = 29.5 bits (65), Expect = 4.7
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 1521 NWIRPSEQPPWPSCSEHADQNVIDVIDKA--CPDILDQCMSQLTCADKTAALSASCIDLQ 1578
N IR S PP P + AD+ VI + + +D A A ++
Sbjct: 51 NAIRTSHYPPHPRLLDLADEMGFWVILECDLETHGFEAGGWVENPSDVPAWRDALVDRME 110
Query: 1579 WIADR-----SASIWTAGIHEDSNRN 1599
+R S +W+ G + N
Sbjct: 111 RTVERDKNHPSIVMWSLGNESGTGSN 136
>d1ehxa_ b.1.18.13 (A:) Cellulosomal scaffoldin protein CipC, module
x2.1 {Clostridium cellulolyticum [TaxId: 1521]}
Length = 94
Score = 27.4 bits (61), Expect = 4.7
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 1262 SGNTLRVKKTYLNKVSKTYLILLLFYRFDGGNCN 1295
N + + +YLN + + L F F G N
Sbjct: 46 GTNEVTLLASYLNTLPENTTKTLTF-DFGVGTKN 78
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 28.8 bits (63), Expect = 4.8
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 211 QIISKYVFHTRTMSFAIFHTMLYLCLWVLHVQEPILYVIRKQHRHSMEQTTPIADYYIIA 270
+I + L + I+K+ + T P+ +Y
Sbjct: 108 KIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKR 167
Query: 271 GVVYQAPDLASV--ISSRLLSTVHHLQ 295
G+V + SV + S++ + + L+
Sbjct: 168 GIVRKVNAEGSVDDVFSQVCTHLDTLK 194
>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum
tuberosum) [TaxId: 4113]}
Length = 523
Score = 29.3 bits (65), Expect = 5.9
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 15/91 (16%)
Query: 966 DLFRTCVAAVPRLIPDAMTGGELVDLLSRLTLHMDEELRALAYQSLQTLVIDFPDW---- 1021
LF + AV ++ + + L +T + + +++ + L F
Sbjct: 350 PLFDAILQAVGKINI-------IAEDLGVITEDVVQLRKSIEAPGMAVLQFAFGSDAENP 402
Query: 1022 ----RHDVLAVFYFGTHDMTIDLQWIADRSA 1048
H+ V Y GTHD W
Sbjct: 403 HLPHNHEQNQVVYTGTHDNDTIRGWWDTLPQ 433
>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain
{Physarum polycephalum [TaxId: 5791]}
Length = 342
Score = 28.7 bits (64), Expect = 7.2
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 627 NNNNNNNNNNNNNNNNNNNNNNNNNPVVIFLD 658
NN++ N N +N + V+ +D
Sbjct: 200 NNSDRLPIAWTNEGNLDNIMLSERGATVVPID 231
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2
[TaxId: 192168]}
Length = 216
Score = 28.3 bits (62), Expect = 9.9
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 10/63 (15%)
Query: 1672 LTDPTPVSDNRASLLRSSAPPRKPVSERDSFLSL---WRYLAIFSARVVPPVPYPTPRCA 1728
LTD P S R P R + LSL WR+ + +A P
Sbjct: 6 LTDQGPGSGRR-------VPARSWLHSDAPALSLNGDWRFRLLPAAPGTAGAGSVLPSGE 58
Query: 1729 SPD 1731
+ +
Sbjct: 59 TVE 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.407
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 7,481,397
Number of extensions: 355256
Number of successful extensions: 1144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1062
Number of HSP's successfully gapped: 48
Length of query: 2056
Length of database: 2,407,596
Length adjustment: 99
Effective length of query: 1957
Effective length of database: 1,048,326
Effective search space: 2051573982
Effective search space used: 2051573982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.1 bits)