BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy713
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 71/184 (38%), Gaps = 18/184 (9%)
Query: 149 FPLDLVKTRLQNQTVGADGKKQYHSIKISPFFVSAGEVVPKISATSIALELVKTKGIVGL 208
FPLD K RLQ Q G+ Q V L +V+T+G L
Sbjct: 20 FPLDTAKVRLQIQ-----GESQ--------GLVRTAASAQYRGVLGTILTMVRTEGPRSL 66
Query: 209 YKGTTATALRDVSFSVVYFPLFAQLNSLGPRKKDGSGEAAFYWSFLSGCISGSMAALSVN 268
Y G A R +SF+ V L+ +S+ GS A L+G +G++A
Sbjct: 67 YNGLVAGLQRQMSFASVRIGLY---DSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQ 123
Query: 269 PFDVIKTRLQVLKKGQGELHYNGVSDA--IIEPLSLVRGMAAGGLAGLCQIVITTPMELL 326
P DV+K R Q + G Y +A I +RG+ G + + I EL+
Sbjct: 124 PTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELV 183
Query: 327 KIQM 330
+
Sbjct: 184 TYDL 187
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 23/85 (27%)
Query: 150 PLDLVKTRLQNQTVGADGKKQYHSIKISPFFVSAGEVVPKISATSIALELVKTKGIVGLY 209
P+D+VKTR N +G QYH SA AL +++ +G Y
Sbjct: 222 PVDVVKTRYMNSALG-----QYH------------------SAGHCALTMLRKEGPRAFY 258
Query: 210 KGTTATALRDVSFSVVYFPLFAQLN 234
KG + LR S++VV F + QL
Sbjct: 259 KGFMPSFLRLGSWNVVMFVTYEQLK 283
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 23/142 (16%)
Query: 150 PLDLVKTRLQNQTVGADGKKQYHSIKISPFFVSAGEVVPKISATSIALELVKTKGIVGLY 209
P D+VK R Q Q G++ +++ + +IA E +GI GL+
Sbjct: 124 PTDVVKVRFQAQARAGGGRRYQSTVE---------------AYKTIARE----EGIRGLW 164
Query: 210 KGTTATALRDVSFSVVYFPLFAQLNSLGPRKKDGSGEAAFYWSFLSGCISGSMAALSVNP 269
KGT+ R+ + + + + + + + F S +G + +P
Sbjct: 165 KGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCH--FTSAFGAGFCTTVIASP 222
Query: 270 FDVIKTRLQVLKKGQGELHYNG 291
DV+KTR + G+ H G
Sbjct: 223 VDVVKTRY--MNSALGQYHSAG 242
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 253 FLSGCISGSMAALSVNPFDVIKTRLQVLKKGQG------ELHYNGVSDAIIE------PL 300
FL + +A L P D K RLQ+ + QG Y GV I+ P
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 301 SLVRGMAAG 309
SL G+ AG
Sbjct: 65 SLYNGLVAG 73
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 25/148 (16%)
Query: 149 FPLDLVKTRLQNQTVGADGKKQYHSIKISPFFVSAGEVVPKISATSIALELVKTKGIVGL 208
+PLD +TRL +++ F G + KI K+ G+ GL
Sbjct: 131 YPLDFARTRLAADVGKGAAQRE---------FTGLGNCITKI---------FKSDGLRGL 172
Query: 209 YKGTTATALRDVSFSVVYFPLFAQLNSLGPRKKDGSGEAAFYWSFLSGCISGSMAALSVN 268
Y+G + + + YF ++ + P K+ S++ ++A L
Sbjct: 173 YQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN----VHIIVSWMIAQTVTAVAGLVSY 228
Query: 269 PFDVIKTR--LQVLKKGQGELHYNGVSD 294
PFD ++ R +Q +KG ++ Y G D
Sbjct: 229 PFDTVRRRMMMQSGRKG-ADIMYTGTVD 255
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 23/130 (17%)
Query: 197 LELVKTKGIVGLYKGTTATALRDVSFSVVYFPLFAQLNSLGPRKKD----GSGEAAFYWS 252
+ + K +G + ++G A +R YFP A + + K G +W
Sbjct: 58 VRIPKEQGFLSFWRGNLANVIR-------YFPTQALNFAFKDKYKQIFLGGVDRHKQFWR 110
Query: 253 FL-----SGCISGSMAALSVNPFDVIKTRLQV-LKKGQGELHYNGVSDAIIEPLSLVRGM 306
+ SG +G+ + V P D +TRL + KG + + G+ + I +
Sbjct: 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK----- 165
Query: 307 AAGGLAGLCQ 316
+ GL GL Q
Sbjct: 166 -SDGLRGLYQ 174
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 248 AFYWSFLSGCISGSMAALSVNPFDVIKTRLQVL---KKGQGELHYNGVSDAIIEPLSLVR 304
+F FL+G ++ +++ +V P + +K LQV K+ E Y G+ D ++ + +
Sbjct: 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVR-IPKEQ 64
Query: 305 GMAAGGLAGLCQIVITTPMELLKIQMQD 332
G + L ++ P + L +D
Sbjct: 65 GFLSFWRGNLANVIRYFPTQALNFAFKD 92
>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 383
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 311 LAGLCQIVITTPMELLKIQMQDAGRVMAQAKLAFFKGGACRM-MV---IAPLFG 360
L L + ++ +ELLK+ +QDAG ++ GG RM MV +A FG
Sbjct: 305 LESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFG 358
>pdb|3HJB|A Chain A, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae.
pdb|3HJB|B Chain B, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae.
pdb|3HJB|C Chain C, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae.
pdb|3HJB|D Chain D, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae
Length = 574
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 177 SPFFVSAGEVVPKISATSIALELVKTKGIVGLYKGTTATALRDV 220
SP V+ +V+P ++A ++ + I G +KG T A+ DV
Sbjct: 132 SPVLVNGEDVMPAVNAVLAKMKAFSERVIGGEWKGFTGKAITDV 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,983,352
Number of Sequences: 62578
Number of extensions: 374236
Number of successful extensions: 619
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 15
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)