Query psy713
Match_columns 378
No_of_seqs 178 out of 2081
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 18:56:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.3E-48 4.3E-53 368.4 16.3 268 4-370 11-283 (303)
2 1okc_A ADP, ATP carrier protei 100.0 4.6E-48 1.6E-52 363.5 18.7 269 4-369 17-293 (297)
3 1okc_A ADP, ATP carrier protei 100.0 2.4E-32 8.1E-37 256.4 16.2 147 188-370 49-198 (297)
4 2lck_A Mitochondrial uncouplin 100.0 5.7E-32 2E-36 254.5 13.0 185 134-370 5-189 (303)
5 3tgu_G UQCRQ, mitochondrial ub 24.0 26 0.00088 25.0 1.0 36 338-373 31-66 (81)
6 1pp9_G Ubiquinol-cytochrome C 17.1 45 0.0015 23.8 1.1 36 338-373 31-66 (81)
7 3cx5_H Cytochrome B-C1 complex 13.4 91 0.0031 22.8 1.9 36 338-373 41-76 (93)
8 2kxa_A Haemagglutinin HA2 chai 13.4 51 0.0017 18.3 0.4 11 338-348 11-21 (30)
9 1y9i_A Low temperature require 10.3 1.6E+02 0.0055 24.2 2.7 44 68-111 111-159 (178)
10 1tlq_A Hypothetical protein YP 9.7 3.5E+02 0.012 22.4 4.4 43 70-112 114-160 (189)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.3e-48 Score=368.36 Aligned_cols=268 Identities=14% Similarity=0.172 Sum_probs=225.6
Q ss_pred CcccceeccChhHHHhhhhhhhhcCCCC--CCCCCCCCchHHHHhhhhcccc---cccccccchhhhhhhhhhHHHHhHH
Q psy713 4 GSGVNILLITPEKAIKLAANDFFRHPKM--QKEPKNQSTNFICLACQTITAN---LLISGSGVNILLITPEKAIKLAAND 78 (378)
Q Consensus 4 g~~~~~~~~~Pld~iK~~~Q~~~~~~~~--~~~~~~~~~~~~~~~~~i~r~e---glyrG~~~~~~~~~~~~~~~f~~y~ 78 (378)
+++++.++++|||+||+|+|.+...... ......|.+++++++ +|+|+| +||||+.+++++.+|..+++|.+||
T Consensus 11 ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye 89 (303)
T 2lck_A 11 AACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTIL-TMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYD 89 (303)
T ss_dssp HHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHH-HHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHH-HHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999999975321100 011346889999999 999999 9999999999999999999999999
Q ss_pred HHHHhhcCCCCCCcchhHHHHHhhhhhHHHHHhhcchHHHHHHHHhcccchhhhhHHhhhhHHHHHHHhhchHHHHHHHH
Q psy713 79 FFRHHLAPSNGEPLSLVRGMAAGGLAGLCQIVITTPMELLKIQMQDAGRVMAQAKLVNGGIAGIIGVSVVFPLDLVKTRL 158 (378)
Q Consensus 79 ~~k~~~~~~~~~~~~~~~~~~ag~~ag~~~~~i~~P~d~ik~r~q~~~~~~~~~~~~~g~~a~~~~~~~~~P~d~vk~rl 158 (378)
.+|+.+..... ..+....+++|++||+++.++++|+|++|+|+|.+...
T Consensus 90 ~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~------------------------------ 138 (303)
T 2lck_A 90 SVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA------------------------------ 138 (303)
T ss_dssp HHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC------------------------------
T ss_pred HHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc------------------------------
Confidence 99999875532 35667778888888888887777777777777765321
Q ss_pred HhccCCCCCCcccccccccccccccCCccCcccHHHHHHHHHHhcCccccccccchhhhhhccchhhHHHHHHHHHhhCC
Q psy713 159 QNQTVGADGKKQYHSIKISPFFVSAGEVVPKISATSIALELVKTKGIVGLYKGTTATALRDVSFSVVYFPLFAQLNSLGP 238 (378)
Q Consensus 159 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~~~~G~~glyrG~~~~~l~~~~~~~i~f~~ye~lk~~l~ 238 (378)
. ....|++.++++++|+++||++|||||+.|++++.+++.+++|.+||.+|+.+.
T Consensus 139 ------~-------------------~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~ 193 (303)
T 2lck_A 139 ------G-------------------GGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLL 193 (303)
T ss_dssp ------C-------------------CSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ------C-------------------CCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 012466999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCchHHHHHHHHHHHhHhhhhccccHHHHHHHHhhcccCCCccccCcHHHHHHHHHHHHHHHHHHHHHhHhHhH
Q psy713 239 RKKDGSGEAAFYWSFLSGCISGSMAALSVNPFDVIKTRLQVLKKGQGELHYNGVSDAIIEPLSLVRGMAAGGLAGLCQIV 318 (378)
Q Consensus 239 ~~~~~~~~~~~~~~~~~g~~ag~~a~~v~~Pldvvk~r~q~~~~~~~~~~y~~~~~~~~~i~~~~~G~~~~~~~~~~~~~ 318 (378)
... ....+...++++|++||++++++++|+||||+|+|++.. ..|.++++|+++|++
T Consensus 194 ~~~--~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~----~~y~~~~~~~~~i~~----------------- 250 (303)
T 2lck_A 194 KAN--LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL----GQYHSAGHCALTMLR----------------- 250 (303)
T ss_dssp TTT--SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----SSCCSHHHHHHHHHH-----------------
T ss_pred hcc--CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc----cccCCHHHHHHHHHH-----------------
Confidence 432 224457788999999999999999999999999999743 369999999999999
Q ss_pred hcCcHHHHHHHHhccchhhhhcccccccchhhhHHHhhcccchhhHhhHHHH
Q psy713 319 ITTPMELLKIQMQDAGRVMAQAKLAFFKGGACRMMVIAPLFGIAQMVYFLGV 370 (378)
Q Consensus 319 ~~~P~d~ir~r~q~~~~~~~eG~~g~y~G~~~~llr~~~~~~i~~~~ye~~~ 370 (378)
+||++|||||+.++++|.+|.++++|.+||...
T Consensus 251 -------------------~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k 283 (303)
T 2lck_A 251 -------------------KEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLK 283 (303)
T ss_dssp -------------------SSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HcChHHhhccHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999764
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.6e-48 Score=363.45 Aligned_cols=269 Identities=16% Similarity=0.266 Sum_probs=215.8
Q ss_pred CcccceeccChhHHHhhhhhhhhcCCCCCCCCCCCCchHHHHhhhhcccc---cccccccchhhhhhhhhhHHHHhHHHH
Q psy713 4 GSGVNILLITPEKAIKLAANDFFRHPKMQKEPKNQSTNFICLACQTITAN---LLISGSGVNILLITPEKAIKLAANDFF 80 (378)
Q Consensus 4 g~~~~~~~~~Pld~iK~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~i~r~e---glyrG~~~~~~~~~~~~~~~f~~y~~~ 80 (378)
+++++.++++|+|+||+|+|.+...... .....|.+++++++ +|+|+| +||||+.+++++.+|..+++|.+||.+
T Consensus 17 ag~~~~~~~~Pld~vKtrlQ~~~~~~~~-~~~~~~~~~~~~~~-~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~ 94 (297)
T 1okc_A 17 AAAISKTAVAPIERVKLLLQVQHASKQI-SAEKQYKGIIDCVV-RIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKY 94 (297)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHGGGCSSC-CGGGSCCSHHHHHH-HHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHhccccccc-ccccccccHHHHHH-HHHhccchhheecccHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999986432211 12346889999999 999999 999999999999999999999999999
Q ss_pred HHhh-cCCCCCC---cchhHHHHHhhhhhHHHHHhhcchHHHHHHHHhcccchhhhhHHhhhhHHHHHHHhhchHHHHHH
Q psy713 81 RHHL-APSNGEP---LSLVRGMAAGGLAGLCQIVITTPMELLKIQMQDAGRVMAQAKLVNGGIAGIIGVSVVFPLDLVKT 156 (378)
Q Consensus 81 k~~~-~~~~~~~---~~~~~~~~ag~~ag~~~~~i~~P~d~ik~r~q~~~~~~~~~~~~~g~~a~~~~~~~~~P~d~vk~ 156 (378)
|+.+ ...+.+. .+....+++|++||+++.++++|+|+||+|+|.+..
T Consensus 95 k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~----------------------------- 145 (297)
T 1okc_A 95 KQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVG----------------------------- 145 (297)
T ss_dssp HHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------------------
T ss_pred HHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhcccc-----------------------------
Confidence 9954 3322211 123455666777776666666666666666655421
Q ss_pred HHHhccCCCCCCcccccccccccccccCCccCcccHHHHHHHHHHhcCccccccccchhhhhhccchhhHHHHHHHHHhh
Q psy713 157 RLQNQTVGADGKKQYHSIKISPFFVSAGEVVPKISATSIALELVKTKGIVGLYKGTTATALRDVSFSVVYFPLFAQLNSL 236 (378)
Q Consensus 157 rlq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~~~~G~~glyrG~~~~~l~~~~~~~i~f~~ye~lk~~ 236 (378)
... ....|++.++++++|+++||++|||||+.|++++.+++++++|.+||.+|+.
T Consensus 146 -------~~~------------------~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~ 200 (297)
T 1okc_A 146 -------KGA------------------AQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGM 200 (297)
T ss_dssp -------SST------------------TTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -------CCC------------------cCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 1124669999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhHhhhhccccHHHHHHHHhhcccCC-CccccCcHHHHHHHHHHHHHHHHHHHHHhHh
Q psy713 237 GPRKKDGSGEAAFYWSFLSGCISGSMAALSVNPFDVIKTRLQVLKKGQ-GELHYNGVSDAIIEPLSLVRGMAAGGLAGLC 315 (378)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~g~~ag~~a~~v~~Pldvvk~r~q~~~~~~-~~~~y~~~~~~~~~i~~~~~G~~~~~~~~~~ 315 (378)
+... .+.+....+++|+++|++++++++|+||||+|+|++.... ....|++.++|+++|++
T Consensus 201 ~~~~----~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~-------------- 262 (297)
T 1okc_A 201 LPDP----KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAK-------------- 262 (297)
T ss_dssp SCGG----GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHH--------------
T ss_pred hccC----CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHH--------------
Confidence 7532 2345778899999999999999999999999999875322 23579999999999999
Q ss_pred HhHhcCcHHHHHHHHhccchhhhhcccccccchhhhHHHhhcccchhhHhhHHH
Q psy713 316 QIVITTPMELLKIQMQDAGRVMAQAKLAFFKGGACRMMVIAPLFGIAQMVYFLG 369 (378)
Q Consensus 316 ~~~~~~P~d~ir~r~q~~~~~~~eG~~g~y~G~~~~llr~~~~~~i~~~~ye~~ 369 (378)
+||++|||||+.|+++|. +.++++|.+||..
T Consensus 263 ----------------------~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~ 293 (297)
T 1okc_A 263 ----------------------DEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEI 293 (297)
T ss_dssp ----------------------HHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC
T ss_pred ----------------------HcCcCeEecchHHHHHhh-ccceeeehHHHHH
Confidence 999999999999999996 5789999999864
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.98 E-value=2.4e-32 Score=256.39 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=128.1
Q ss_pred CcccHHHHHHHHHHhcCccccccccchhhhhhccchhhHHHHHHHHHhhCCCCCCCCCC--chHHHHHHHHHHHhHhhhh
Q psy713 188 PKISATSIALELVKTKGIVGLYKGTTATALRDVSFSVVYFPLFAQLNSLGPRKKDGSGE--AAFYWSFLSGCISGSMAAL 265 (378)
Q Consensus 188 ~y~~~~~~~~~i~~~~G~~glyrG~~~~~l~~~~~~~i~f~~ye~lk~~l~~~~~~~~~--~~~~~~~~~g~~ag~~a~~ 265 (378)
.|++.++++++++++||++|||||+.+++++.+++.+++|.+||.+|+.+....+.... .....++++|++||+++++
T Consensus 49 ~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~ 128 (297)
T 1okc_A 49 QYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLC 128 (297)
T ss_dssp SCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999954221111112 2456789999999999999
Q ss_pred ccccHHHHHHHHhhcccC-CCccccCcHHHHHHHHHHHHHHHHHHHHHhHhHhHhcCcHHHHHHHHhccchhhhhccccc
Q psy713 266 SVNPFDVIKTRLQVLKKG-QGELHYNGVSDAIIEPLSLVRGMAAGGLAGLCQIVITTPMELLKIQMQDAGRVMAQAKLAF 344 (378)
Q Consensus 266 v~~Pldvvk~r~q~~~~~-~~~~~y~~~~~~~~~i~~~~~G~~~~~~~~~~~~~~~~P~d~ir~r~q~~~~~~~eG~~g~ 344 (378)
+++|+|+||+|+|++... .....|.+.++|+++|++ +||++||
T Consensus 129 ~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~------------------------------------~eG~~gl 172 (297)
T 1okc_A 129 FVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK------------------------------------SDGLRGL 172 (297)
T ss_dssp HHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHH------------------------------------HHCHHHH
T ss_pred HhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHH------------------------------------hccHHHh
Confidence 999999999999997532 224579999999999999 9999999
Q ss_pred ccchhhhHHHhhcccchhhHhhHHHH
Q psy713 345 FKGGACRMMVIAPLFGIAQMVYFLGV 370 (378)
Q Consensus 345 y~G~~~~llr~~~~~~i~~~~ye~~~ 370 (378)
|||+.++++|.+|.+++.|.+||...
T Consensus 173 yrG~~~~l~~~~~~~~~~f~~ye~~k 198 (297)
T 1okc_A 173 YQGFNVSVQGIIIYRAAYFGVYDTAK 198 (297)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999765
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.97 E-value=5.7e-32 Score=254.52 Aligned_cols=185 Identities=24% Similarity=0.308 Sum_probs=148.9
Q ss_pred HHhhhhHHHHHHHhhchHHHHHHHHHhccCCCCCCcccccccccccccccCCccCcccHHHHHHHHHHhcCccccccccc
Q psy713 134 LVNGGIAGIIGVSVVFPLDLVKTRLQNQTVGADGKKQYHSIKISPFFVSAGEVVPKISATSIALELVKTKGIVGLYKGTT 213 (378)
Q Consensus 134 ~~~g~~a~~~~~~~~~P~d~vk~rlq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~~~~G~~glyrG~~ 213 (378)
+++|+++++++.++++|+|++|+|+|++....... ...+...|++.++++++|+++||++|||||+.
T Consensus 5 ~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~ 71 (303)
T 2lck_A 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLV-------------RTAASAQYRGVLGTILTMVRTEGPRSLYNGLV 71 (303)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHH-------------HHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHH
T ss_pred HHhHHHHHHHHHHHcCcHHHHHHHHHhhhcccccc-------------ccccCCCCCCHHHHHHHHHHhhCHHHHHcCCH
Confidence 44555555555555555555555555543221000 00011246799999999999999999999999
Q ss_pred hhhhhhccchhhHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHHHhHhhhhccccHHHHHHHHhhcccCCCccccCcHH
Q psy713 214 ATALRDVSFSVVYFPLFAQLNSLGPRKKDGSGEAAFYWSFLSGCISGSMAALSVNPFDVIKTRLQVLKKGQGELHYNGVS 293 (378)
Q Consensus 214 ~~~l~~~~~~~i~f~~ye~lk~~l~~~~~~~~~~~~~~~~~~g~~ag~~a~~v~~Pldvvk~r~q~~~~~~~~~~y~~~~ 293 (378)
+++++.+++.+++|.+||.+|+.+....+ ..+....+++|+++|+++.++++|+|+||+|+|++........|.+.+
T Consensus 72 ~~l~~~~~~~~i~f~~ye~~k~~~~~~~~---~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~ 148 (303)
T 2lck_A 72 AGLQRQMSFASVRIGLYDSVKQFYTKGSE---HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTV 148 (303)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHSCCCS---SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc---CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHH
Confidence 99999999999999999999998864311 366788999999999999999999999999999986433455799999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHhHhcCcHHHHHHHHhccchhhhhcccccccchhhhHHHhhcccchhhHhhHHHH
Q psy713 294 DAIIEPLSLVRGMAAGGLAGLCQIVITTPMELLKIQMQDAGRVMAQAKLAFFKGGACRMMVIAPLFGIAQMVYFLGV 370 (378)
Q Consensus 294 ~~~~~i~~~~~G~~~~~~~~~~~~~~~~P~d~ir~r~q~~~~~~~eG~~g~y~G~~~~llr~~~~~~i~~~~ye~~~ 370 (378)
+|+++|++ +||++|||||+.++++|.+|.+++.|.+||...
T Consensus 149 ~~~~~i~~------------------------------------~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k 189 (303)
T 2lck_A 149 EAYKTIAR------------------------------------EEGIRGLWKGTSPNVARNAIVNCAELVTYDLIK 189 (303)
T ss_dssp HHHHHHHH------------------------------------HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------------------------hcChhhhhCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999764
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=24.00 E-value=26 Score=25.05 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=29.6
Q ss_pred hhcccccccchhhhHHHhhcccchhhHhhHHHHHhh
Q psy713 338 AQAKLAFFKGGACRMMVIAPLFGIAQMVYFLGVAEN 373 (378)
Q Consensus 338 ~eG~~g~y~G~~~~llr~~~~~~i~~~~ye~~~~~~ 373 (378)
..|+...+|-+..+++..+|...+.+.+|.++.-|+
T Consensus 31 ~~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 31 SDALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 456666777777888889999999999999988754
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=17.07 E-value=45 Score=23.75 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=30.5
Q ss_pred hhcccccccchhhhHHHhhcccchhhHhhHHHHHhh
Q psy713 338 AQAKLAFFKGGACRMMVIAPLFGIAQMVYFLGVAEN 373 (378)
Q Consensus 338 ~eG~~g~y~G~~~~llr~~~~~~i~~~~ye~~~~~~ 373 (378)
..|+...+|-+.-+++..+|...+++.+|.++.-|+
T Consensus 31 ~~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 31 SKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 457777788888889999999999999999988765
No 7
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=13.40 E-value=91 Score=22.79 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=31.6
Q ss_pred hhcccccccchhhhHHHhhcccchhhHhhHHHHHhh
Q psy713 338 AQAKLAFFKGGACRMMVIAPLFGIAQMVYFLGVAEN 373 (378)
Q Consensus 338 ~eG~~g~y~G~~~~llr~~~~~~i~~~~ye~~~~~~ 373 (378)
..|+..++|-+.-+++..+|...+.+.+|.++.-|+
T Consensus 41 ~~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~ 76 (93)
T 3cx5_H 41 HNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYN 76 (93)
T ss_dssp TTTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHhcceEEechHhHHHHHHHHHHHHH
Confidence 568888889999999999999999999999887755
No 8
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=13.38 E-value=51 Score=18.32 Aligned_cols=11 Identities=9% Similarity=0.030 Sum_probs=6.8
Q ss_pred hhcccccccch
Q psy713 338 AQAKLAFFKGG 348 (378)
Q Consensus 338 ~eG~~g~y~G~ 348 (378)
+.|+.|+-.||
T Consensus 11 eggW~gmi~gw 21 (30)
T 2kxa_A 11 EGGWTGMIDGW 21 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred hcCcccccccc
Confidence 56666665554
No 9
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=10.32 E-value=1.6e+02 Score=24.22 Aligned_cols=44 Identities=5% Similarity=-0.075 Sum_probs=28.5
Q ss_pred hhhhHHHHhHHHHHHhh----cCC-CCCCcchhHHHHHhhhhhHHHHHh
Q psy713 68 PEKAIKLAANDFFRHHL----APS-NGEPLSLVRGMAAGGLAGLCQIVI 111 (378)
Q Consensus 68 ~~~~~~f~~y~~~k~~~----~~~-~~~~~~~~~~~~ag~~ag~~~~~i 111 (378)
...++.|..||..|-.. ... .+.-..+..+++||..|+++..++
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l~ 159 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLA 159 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 45566777888877543 211 112456888999999998876444
No 10
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519 protein structure initiative, NEW YORK SGX research center structural genomics; 2.40A {Bacillus subtilis} SCOP: a.195.1.1
Probab=9.71 E-value=3.5e+02 Score=22.36 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=26.6
Q ss_pred hhHHHHhHHHHHH-hh---cCCCCCCcchhHHHHHhhhhhHHHHHhh
Q psy713 70 KAIKLAANDFFRH-HL---APSNGEPLSLVRGMAAGGLAGLCQIVIT 112 (378)
Q Consensus 70 ~~~~f~~y~~~k~-~~---~~~~~~~~~~~~~~~ag~~ag~~~~~i~ 112 (378)
....|+-||..|- .+ ....+.-.++..++++|.+|++.+.+.-
T Consensus 114 g~tNfGylDk~KpGIi~~Ld~k~~~v~tFLDDiVgaiaAaaaSRlah 160 (189)
T 1tlq_A 114 GLTNFGYLDKEKIGIIKELDESPDGIHTFLDDIVAALAAAAASRIAH 160 (189)
T ss_dssp HHHHHHHHHHSCCTHHHHTSSSCSCCCTTHHHHHHHHHHHHHHHHHT
T ss_pred eeeecccccccCcceeccccCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence 3444666666662 22 2221114678899999999998887664
Done!