RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy713
(378 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 68.8 bits (169), Expect = 1e-14
Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 132 AKLVNGGIAGIIGVSVVFPLDLVKTRLQNQTVGADGKKQYHSIKISPFFVSAGEVVPKIS 191
A L+ GGIAG I +V +PLD+VKTRLQ+ G G ++Y I
Sbjct: 7 ASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAG--GSRKYKGI----------------- 47
Query: 192 ATSIALELVKTKGIVGLYKGTTATALRDVSFSVVYFPLFAQLNSL 236
++ K +GI GLYKG LR + +YF + L L
Sbjct: 48 -LDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKL 91
Score = 53.4 bits (129), Expect = 3e-09
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 249 FYWSFLSGCISGSMAALSVNPFDVIKTRLQVLKKGQGELHYNGVSDAIIE------PLSL 302
F S L+G I+G++AA P DV+KTRLQ G Y G+ D + L
Sbjct: 5 FLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGS-RKYKGILDCFKKIYKEEGIRGL 63
Query: 303 VRGMAA 308
+G+
Sbjct: 64 YKGLLP 69
Score = 45.3 bits (108), Expect = 2e-06
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 298 EPLSLVRGMAAGGLAGLCQIVITTPMELLKIQMQDAGRVMAQAK---------------- 341
PLS + + AGG+AG +T P++++K ++Q + ++
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGI 60
Query: 342 LAFFKGGACRMMVIAPLFGIAQMVY 366
+KG ++ +AP I Y
Sbjct: 61 RGLYKGLLPNLLRVAPAAAIYFGTY 85
Score = 26.8 bits (60), Expect = 6.9
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 2 YRGSGVNILLITPEKAIKLAANDFFRH 28
Y+G N+L + P AI + +
Sbjct: 64 YKGLLPNLLRVAPAAAIYFGTYETLKK 90
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 47.1 bits (112), Expect = 6e-06
Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 24/165 (14%)
Query: 132 AKLVNGGIAGIIGVSVVFPLDLVKTRLQNQTVGADGKKQYHSIKISPFFVSAGEVVPKIS 191
+++GG+AG + +V+PLD +TRL + +G G ++ F + + KIS
Sbjct: 115 VNILSGGLAGASSLLIVYPLDFARTRLASD-IGKGGDRE---------FTGLFDCLMKIS 164
Query: 192 ATSIALELVKTKGIVGLYKGTTATALRDVSFSVVYFPLFAQLNSLGPRKKDGSGEAAFYW 251
K G + LY+G + + + YF L+ +L + Y
Sbjct: 165 ---------KQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKAL--LFGNDKNTNILYK 213
Query: 252 SFLSGCISGSMAALSVNPFDVIKTRLQVL--KKGQGELHYNGVSD 294
++ ++ +A L PFD ++ R+ ++ +K + E+ Y G D
Sbjct: 214 WAVAQTVT-ILAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGTLD 257
Score = 39.0 bits (91), Expect = 0.003
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 43/175 (24%)
Query: 137 GGIAGIIGVSVVFPLDLVKTRLQNQTVGADGKKQYHSIKISPFFVSAGEVVPKISATSIA 196
GGI+ I + V P++ VK +Q Q + K VP+ S
Sbjct: 14 GGISAAISKTAVAPIERVKMLIQTQDSIPEIKSG---------------KVPRYSGIVNC 58
Query: 197 LELV-KTKGIVGLYKGTTATALRDVSFSVVYFPL----FA---QLNSLGPRKKDGSGEAA 248
V K +G++ L++G TA +R YFP FA ++ P+ +
Sbjct: 59 FRRVSKEQGVLSLWRGNTANVIR-------YFPTQAFNFAFKDYFKNMFPKYNQKTD--- 108
Query: 249 FYWSF-----LSGCISGSMAALSVNPFDVIKTRL--QVLKKGQGELHYNGVSDAI 296
+W F LSG ++G+ + L V P D +TRL + K G E + G+ D +
Sbjct: 109 -FWKFFGVNILSGGLAGASSLLIVYPLDFARTRLASDIGKGGDRE--FTGLFDCL 160
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 35.3 bits (81), Expect = 0.040
Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 61/202 (30%)
Query: 134 LVNGGIAGIIGVSVVFPLDLVKTRLQ--NQTVGADGKKQYH--------SIKISPFFVSA 183
LV G ++G+I +V++P+D +KT +Q +D KK Y ++ S FF
Sbjct: 7 LVTGALSGVIVDAVLYPIDSIKTNIQAKKSFSFSDIKKLYSGILPTLVGTVPASAFFYCF 66
Query: 184 GEVVPK--------ISATSIAL-----------------ELVKTKGIVG--------LYK 210
E+ K IS T++ L E+VK V +Y+
Sbjct: 67 YELSKKLLTEYRENISKTNLYLISTSIAEITACIVRLPFEIVKQNMQVSGNISVLKTIYE 126
Query: 211 GTTATAL-------------RDVSFSVVYFPLFAQLNSLGPRKKDGSGEAAFYWSFLS-- 255
T L R++ F + + L+ L KKD + Y S S
Sbjct: 127 ITQREGLPSFLGKSYFVMIVREIPFDCIQYFLWETLKEKA--KKDFGKFSKKYPSITSAI 184
Query: 256 -GCISGSMAALSVNPFDVIKTR 276
G ++G +A P DVIK+R
Sbjct: 185 CGGLAGGIAGFLTTPVDVIKSR 206
>gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 189
Score = 30.2 bits (69), Expect = 1.0
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 45 LACQTITA---NLLISGSGVNILLITPEKAIKLAANDFFRHH 83
L C+ I A N L SGS V++ +IT + ++ R++
Sbjct: 154 LVCEAIEAGIFNDLGSGSNVDLCVITKDGV------EYLRNY 189
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal
domain. The N-terminal domain of Acyl-CoA dehydrogenase
is an all-alpha domain.
Length = 113
Score = 27.8 bits (63), Expect = 3.4
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 67 TPE-KAIKLAANDFFRHHLAP-------SNGEPLSLVRGMAAGGLAGL 106
T E +A++ +F +AP P L R + GL GL
Sbjct: 1 TEEQEALRDTVREFAEEEVAPHAAEWDEEGEFPRELWRKLGELGLLGL 48
>gnl|CDD|215974 pfam00529, HlyD, HlyD family secretion protein.
Length = 304
Score = 29.0 bits (65), Expect = 3.7
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 108 QIVITTPMELLKIQMQD--AGRVMAQAKLVNGGIAGIIGVSVVFPLDLVKTRLQNQTVGA 165
+ T + L++ + G V L GG+ I + V L+ Q V
Sbjct: 213 ANLGETQLRLVRPGPRAPLTGGVYVLVVLTEGGVVAAILMPTVAVFRLLPVEAQVAVVNI 272
Query: 166 DGKKQYHSIKISP 178
D Q ++I
Sbjct: 273 DKVVQGVPVEIGL 285
>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional.
Length = 895
Score = 29.3 bits (66), Expect = 3.8
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 12/52 (23%)
Query: 86 PSNGEPLSLVRGMAAGGLAGLCQIVITTP------------MELLKIQMQDA 125
P +G PL L++ G QI I P M+ L + + DA
Sbjct: 684 PDDGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDA 735
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 28.1 bits (63), Expect = 8.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 198 ELVKTKGIVGLYKGTTATALRDVSFSV 224
E+++ + I Y AL+DVSFSV
Sbjct: 4 EIIRVEHISFRYPDAATYALKDVSFSV 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.396
Gapped
Lambda K H
0.267 0.0627 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,182,504
Number of extensions: 1884392
Number of successful extensions: 1526
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1517
Number of HSP's successfully gapped: 25
Length of query: 378
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 279
Effective length of database: 6,546,556
Effective search space: 1826489124
Effective search space used: 1826489124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.1 bits)