RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy713
(378 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 131 bits (331), Expect = 1e-35
Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 55/240 (22%)
Query: 58 GSGVNILLITPEKAIKLAANDFFRHHLAPSNGEPLSLVRGMAAGGLAGLCQIVITTPMEL 117
G+ N++ P +A+ A D ++ R A
Sbjct: 72 GNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFA------------------ 113
Query: 118 LKIQMQDAGRVMAQAKLVNGGIAGIIGVSVVFPLDLVKTRLQNQTVGADGKKQYHSIKIS 177
G + + GG AG + V+PLD +TRL ++++ +
Sbjct: 114 --------GNLAS------GGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGL--- 156
Query: 178 PFFVSAGEVVPKISATSIALELVKTKGIVGLYKGTTATALRDVSFSVVYFPLFAQLNSLG 237
G + KI K+ G+ GLY+G + + + YF ++ +
Sbjct: 157 ------GNCITKI---------FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML 201
Query: 238 PRKKDGSGEAAFYWSFLSGCISGSMAALSVNPFDVIKTRLQV-LKKGQGELHYNGVSDAI 296
P K+ S++ ++A L PFD ++ R+ + + ++ Y G D
Sbjct: 202 PDPKNVH----IIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCW 257
Score = 94.6 bits (236), Expect = 3e-22
Identities = 38/244 (15%), Positives = 73/244 (29%), Gaps = 62/244 (25%)
Query: 134 LVNGGIAGIIGVSVVFPLDLVKTRLQNQTVGADGKKQYHSIKISPFFVSAGEVVPKISAT 193
+ GG+A I + V P++ VK LQ Q + I V
Sbjct: 11 FLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVV------------ 58
Query: 194 SIALELVKTKGIVGLYKGTTATALRDVSFSVVYFPLFAQLNSL--GPRKKDGSGEAAFYW 251
+ K +G + ++G A +R + F + + G + F
Sbjct: 59 ----RIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAG 114
Query: 252 SFLSGCISGSMAALSVNPFDVIKTRLQV-LKKGQGELHYNGVSDAIIE------PLSLVR 304
+ SG +G+ + V P D +TRL + KG + + G+ + I + L +
Sbjct: 115 NLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQ 174
Query: 305 G-------------------------------------MAAGGLAGLCQIVITTPMELLK 327
G +++ P + ++
Sbjct: 175 GFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVR 234
Query: 328 IQMQ 331
+M
Sbjct: 235 RRMM 238
Score = 51.9 bits (125), Expect = 1e-07
Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 52/135 (38%)
Query: 249 FYWSFLSGCISGSMAALSVNPFDVIKTRLQV---LKKGQGELHYNGVSDAIIE------P 299
F FL+G ++ +++ +V P + +K LQV K+ E Y G+ D ++
Sbjct: 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 66
Query: 300 LSLVRG-------------------------------------------MAAGGLAGLCQ 316
LS RG +A+GG AG
Sbjct: 67 LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATS 126
Query: 317 IVITTPMELLKIQMQ 331
+ P++ + ++
Sbjct: 127 LCFVYPLDFARTRLA 141
Score = 33.4 bits (77), Expect = 0.11
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 298 EPLSLVRGMAAGGLAGLCQIVITTPMELLKIQMQ 331
+ LS ++ AGG+A P+E +K+ +Q
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQ 36
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 110 bits (278), Expect = 4e-28
Identities = 56/283 (19%), Positives = 86/283 (30%), Gaps = 74/283 (26%)
Query: 133 KLVNGGIAGIIGVSVVFPLDLVKTRLQNQTVGADGKKQYHSIKISPFFVSAGEVVPKISA 192
K + G A I + FPLD K RLQ Q +
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVR-------------TAASAQYRGV 50
Query: 193 TSIALELVKTKGIVGLYKGTTATALRDVSFSVVYFPLFAQLNSLGPRKKDGSGEAAFYWS 252
L +V+T+G LY G A R +SF+ V L+ + GS A
Sbjct: 51 LGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFY---TKGSEHAGIGSR 107
Query: 253 FLSGCISGSMAALSVNPFDVIKTRLQVLKKGQGELHYNGVSDAIIE------PLSLVRG- 305
L+G +G++A P DV+K R Q + G Y +A L +G
Sbjct: 108 LLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGT 167
Query: 306 --------------------------------------MAAGGLAGLCQIVITTPMELLK 327
+ AG C VI +P++++K
Sbjct: 168 SPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVK 227
Query: 328 IQMQ-----------DAGRVMAQAK--LAFFKGGACRMMVIAP 357
+ M + + AF+KG + +
Sbjct: 228 TRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGS 270
Score = 93.9 bits (234), Expect = 5e-22
Identities = 44/213 (20%), Positives = 71/213 (33%), Gaps = 33/213 (15%)
Query: 91 PLSLVRGMAAGGLAGLCQIVITTP----MELLKIQMQDAGRVMAQA-KLVNGGIAGIIGV 145
P SL G+ AG Q+ + + +K +L+ G G + V
Sbjct: 63 PRSLYNGLVAGLQR---QMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAV 119
Query: 146 SVVFPLDLVKTRLQNQTVGADGKKQYHSIKISPFFVSAGEVVPKISATSIALELVKTKGI 205
+V P D+VK R Q Q G + + S E I + +GI
Sbjct: 120 AVAQPTDVVKVRFQAQ--ARAGGGRRYQ--------STVEAYKTI---------AREEGI 160
Query: 206 VGLYKGTTATALRDVSFSVVYFPLFAQLNSLGPRKKDGSGEAAFYWSFLSGCISGSMAAL 265
GL+KGT+ R+ + + + + F S +G +
Sbjct: 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA--NLMTDDLPCHFTSAFGAGFCTTV 218
Query: 266 SVNPFDVIKTRLQVLKKGQGELHYNGVSDAIIE 298
+P DV+KTR GQ Y+ +
Sbjct: 219 IASPVDVVKTRYMNSALGQ----YHSAGHCALT 247
Score = 63.1 bits (154), Expect = 2e-11
Identities = 37/213 (17%), Positives = 66/213 (30%), Gaps = 56/213 (26%)
Query: 71 AIKLAANDFFRHHLAPSNGEPLSLVRGMAAGGLAGLCQIVITTPMELLKIQMQDAGRVMA 130
++++ D + + + + AG G + + P +++K++ Q R
Sbjct: 82 SVRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGG 140
Query: 131 QAKLVN-----------GGIAG------------IIGVSVVFPL-DLVKTRLQNQTVGAD 166
+ + GI G I DL+K L + D
Sbjct: 141 GRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTD 200
Query: 167 GKKQYHSIKISPFFVS---AGEVVPKIS--------------------ATSIALELVKTK 203
+ F S AG I+ A AL +++ +
Sbjct: 201 D--------LPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKE 252
Query: 204 GIVGLYKGTTATALRDVSFSVVYFPLFAQLNSL 236
G YKG + LR S++VV F + QL
Sbjct: 253 GPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRA 285
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 7e-06
Identities = 69/403 (17%), Positives = 116/403 (28%), Gaps = 141/403 (34%)
Query: 2 YRGSGVNIL--LITPEKAIKLAANDFFRHPKMQKEPKNQSTNFICL---ACQTITANLL- 55
G+NIL L P D+ + S I + A +TA LL
Sbjct: 208 VFTQGLNILEWLENPSNT---PDKDYLLSIPI-------SCPLIGVIQLAHYVVTAKLLG 257
Query: 56 ---------ISG-SGVNILLITPEKAIKLAA----NDFFR----------------HHLA 85
+ G +G + L+T A+ +A FF +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVT---AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 86 PSNGEPLSLVRGMAAGGLAGLCQIVITTPMELLKIQMQDAGRVMAQAKLVNGGIAGIIGV 145
P+ P S++ G + +PM L I +
Sbjct: 315 PNTSLPPSILEDSLENN-EG-----VPSPM------------------LS------ISNL 344
Query: 146 SVVFPLDLVKTRLQ--NQTVGADGKKQYHSIKISPF-----FVSAGEVVPKISATSIALE 198
+ + V+ + N + A + ++IS V +G P S + L
Sbjct: 345 T----QEQVQDYVNKTNSHLPAGKQ-----VEISLVNGAKNLVVSG---PPQSLYGLNLT 392
Query: 199 LVKTKGIVGLYKGTTATALRDVSFSVVYFPLFAQLNSLGPRKKDGSGEAAFYWSFLSGCI 258
L K K GL + + R + FS + P+ + P F+ L
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS------P----------FHSHLLVPAS 436
Query: 259 SGSMAALSVNPFDVIKTRLQ--VLKKGQGELH-YNGVSDAIIEPLSLVRGMAAGGLAGLC 315
L N +Q V ++G SD +R ++ +
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPV-------YDTFDG-SD--------LRVLSGSISERIV 480
Query: 316 QIVITTPMELLKIQMQDAGRVMAQAKLAFFKGGACRMMVIAPL 358
+I P++ A + L F GGA + L
Sbjct: 481 DCIIRLPVKWETTTQFKATHI-----LDFGPGGASG---LGVL 515
Score = 43.9 bits (103), Expect = 8e-05
Identities = 47/263 (17%), Positives = 71/263 (26%), Gaps = 96/263 (36%)
Query: 144 GVSVVFPLDLVKTRLQNQTV---GADGKKQYH-------------SIKISPFFVSAGEVV 187
G S+ LD+V N T+ G GK+ +K F E
Sbjct: 1658 GFSI---LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE-- 1712
Query: 188 PKISATSIALELVKTKGIVGLYKGTTAT--ALRDVSFSVVYFPLFAQLNSLGPRKKD--- 242
+TS GL T T AL + + F L S G D
Sbjct: 1713 ---HSTSYTFR-----SEKGLLSATQFTQPALTLMEKA-----AFEDLKSKGLIPADATF 1759
Query: 243 -G-S-GEAAFYWSFLSGCISGSMAALSVNPF-DVIKTRLQVLKKGQ--------GELHYN 290
G S GE Y + L+ ++ M +++ V +G EL +
Sbjct: 1760 AGHSLGE---Y-AALA-SLADVM------SIESLVEV---VFYRGMTMQVAVPRDELGRS 1805
Query: 291 GVSDAIIEPLSLVRGMAAGGLAGLC---------------------QIVI---------- 319
I P + + L + Q V
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTV 1865
Query: 320 TTPMELLKIQMQDAGRVMAQAKL 342
T + +K+Q D + L
Sbjct: 1866 TNVLNFIKLQKIDIIELQKSLSL 1888
Score = 39.3 bits (91), Expect = 0.002
Identities = 73/418 (17%), Positives = 123/418 (29%), Gaps = 142/418 (33%)
Query: 14 PEKAIKLAANDFFRHPKMQKEPKNQSTNFICLACQTITANLLISGSGVNILLITPEKAIK 73
P +L F + EP L N+ L E
Sbjct: 54 PTTPAELVG-KFLGYVSSLVEPSKVGQFDQVL----------------NLCLTEFENCY- 95
Query: 74 LAANDFFRH----HLAPSNGEPLSLVRGM-----AAGGLAGLCQIVITTPMELLKIQMQD 124
L ND H L N L + + A +A + L + +
Sbjct: 96 LEGNDI--HALAAKLLQENDTTLVKTKELIKNYITARIMAKR-PFDKKSNSALFRAVGEG 152
Query: 125 AGRVMAQAKLVNGGIAGIIGVSVVFP-L-DLVKTRLQNQTVGADGKKQYHSIKISPFFVS 182
+++A + GG G F L DL +T YH + +
Sbjct: 153 NAQLVA----IFGG-QGNT--DDYFEELRDLYQT--------------YHVL-VGDLIKF 190
Query: 183 AGEVVPKISATSIALELVKTKG--IVGLYKGTTATALRDVSFSV-VYFPL-----FAQ-- 232
+ E + ++ T++ E V T+G I+ + + T +D S+ + PL A
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 233 --LNSLG--PRKKDGSGEAAFYWSFLSGCISG--SMAALSVNP-----FDVIKTRLQVL- 280
LG P GE Y +G G + A++ F ++ + VL
Sbjct: 251 VTAKLLGFTP------GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 281 ------------------------KKGQGE----LHYNGVSDAIIE----------P--- 299
+ +G L + ++ ++ P
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 300 ---LSLVRG----MAAG---GLAGLCQIV--ITTPMELLKIQMQDAGRV-MAQAKLAF 344
+SLV G + +G L GL + P L D R+ ++ KL F
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL------DQSRIPFSERKLKF 416
Score = 32.7 bits (74), Expect = 0.23
Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 42/117 (35%)
Query: 283 GQG-------EL-----HYNGVSDAIIEPLSLVRGMAAGGLAGLCQIVITTPMEL---LK 327
GQG EL Y+ + +I+ +A L+ L + + L
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIK-------FSAETLSELIRTTLDAEKVFTQGLN 214
Query: 328 IQ--MQDAGRV-----MAQAKLAFFKGGACRMMVIAPLFGIAQMVYFLGVAENLLGI 377
I +++ + ++ PL G+ Q+ +++ V LLG
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISC------------PLIGVIQLAHYV-VTAKLLGF 258
Score = 29.6 bits (66), Expect = 1.9
Identities = 29/237 (12%), Positives = 63/237 (26%), Gaps = 90/237 (37%)
Query: 161 QTVGADGKKQYHSIKISP----FFVSAGEVVPKISATSIALELVKT--KGIVGLYKGTTA 214
Q G G Y + S + A SI L++V + + G
Sbjct: 1627 QEQGM-GMDLYKT---SKAAQDVWNRADNHFKDTYGFSI-LDIVINNPVNLTIHFGGEKG 1681
Query: 215 TALRDVSFSVVY----------FPLFAQLNSLGPRKKDGSGEAAFYWSFLSGCISGS--- 261
+R+ ++++ +F ++N S
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINE----------------HSTSYTFRSEKGL 1725
Query: 262 ----------MAALSVNPFDVIKTRLQVLKKGQ-------GELHYN------GV---SDA 295
+ + F+ +K++ ++ GE Y V
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSK-GLIPADATFAGHSLGE--YAALASLADVMSIESL 1782
Query: 296 IIEPLSLV--RGMAA-------------GGLAGLC--QIVITTPMELLKIQMQDAGR 335
+ +V RGM G+ + ++ + E L+ ++ G+
Sbjct: 1783 V----EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 27/199 (13%), Positives = 58/199 (29%), Gaps = 47/199 (23%)
Query: 152 DLVKTRLQNQTVGADGK-KQYHSIK---------ISPFFVSAGEVVPKISATSIALELVK 201
+ + ++ + + Y + + + VS + K+ LEL
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--RQALLELRP 149
Query: 202 TKGIVGLY--KGT-----TATALRDVSF-SVVYFPLFAQLNSLGPRKKDGS----GEAAF 249
K ++ + G+ + F +F LN L + +
Sbjct: 150 AKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLN-LKNCNSPETVLEMLQKLL 206
Query: 250 YWSFLSGCISGSMAALSVNPFDVIKTRLQVLKKGQGELHYNG------VSDA-IIEPLSL 302
Y + ++ I+ L+ L K + + N V +A +L
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--PYENCLLVLLNVQNAKAWNAFNL 264
Query: 303 VRGMAAGGLAGLCQIVITT 321
C+I++TT
Sbjct: 265 S-----------CKILLTT 272
>2vve_A Spike protein P1; viral stem-receptor binding domain, viral
protein; 1.77A {Pseudoalteromonas phage PM2} PDB: 2vvd_A
Length = 254
Score = 28.9 bits (64), Expect = 2.6
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 154 VKTRLQNQTVGADGKKQYHSIKISP-FFVSAGE 185
+K R+++++ G DG Y SI + P F+++ G+
Sbjct: 131 LKARVRHKSKGVDGLGDYTSISVKPAFYITEGD 163
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic
aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo
sapiens} PDB: 2xiq_A* 3bic_A
Length = 762
Score = 28.9 bits (65), Expect = 3.0
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 214 ATALRDVSFSVVYFPLF 230
AT D+ F V PLF
Sbjct: 625 ATGFADLGFDVDIGPLF 641
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 28.7 bits (65), Expect = 3.6
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 60 GVNILLITPEKAIKLAANDFFRHHLAPSNGE-------PLSLVRGMAAGGLAGLC 107
+ LL EK ++ AA F P + P L+ A G G
Sbjct: 6 ALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPT 60
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 27.9 bits (63), Expect = 3.8
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 28 HPKMQKEPKNQSTNFICLACQTITANLLISGSGVNILLITPEKAIKL 74
P M E + + + L Q + + + GV + ++ + ++
Sbjct: 149 RPDMTTE---EGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQV 192
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase;
HET: B12 DCA; 2.00A {Propionibacterium freudenreichii
subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A*
3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Length = 727
Score = 28.5 bits (64), Expect = 3.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 214 ATALRDVSFSVVYFPLFA 231
ATA D+ F V PLF
Sbjct: 617 ATAYADLGFDVDVGPLFQ 634
>2w0c_L Protein 2; virus, member of PRD1-adeno viral lineage,
membrane-containing bacteriophage, virus virion,
membrane; 7.00A {Pseudoalteromonas phage PM2}
Length = 335
Score = 28.5 bits (63), Expect = 3.9
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 154 VKTRLQNQTVGADGKKQYHSIKISP-FFVSAGE 185
+K R+++++ G DG Y SI + P F+++ G+
Sbjct: 212 LKARVRHKSKGVDGLGDYTSISVKPAFYITEGD 244
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 28.4 bits (64), Expect = 4.9
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 60 GVNILLITPEKAIKLAANDFFRHHLAPSNGE-------PLSLVRGMAAGGLAGL 106
N LL E+AI+ + +AP E P + + A G+AG
Sbjct: 50 HFNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGG 103
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 27.9 bits (63), Expect = 5.4
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 7/55 (12%)
Query: 60 GVNILLITPEKAIKLAANDFFRHHLAPSNGE-------PLSLVRGMAAGGLAGLC 107
+ L T E I+ + + L P ++ M G+ G
Sbjct: 9 VLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPT 63
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 27.2 bits (61), Expect = 8.2
Identities = 4/47 (8%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 28 HPKMQKEPKNQSTNFICLACQTITANLLISGSGVNILLITPEKAIKL 74
P + +E ++ + + + +++ ++ +I L
Sbjct: 148 TPTISRE---RAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDL 191
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics,
NPPSFA, national project on structural and functional
analyses; 1.80A {Aeropyrum pernix}
Length = 161
Score = 26.6 bits (59), Expect = 9.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 214 ATALRDVSFSVVYFPLF 230
A ALRD F VVY L
Sbjct: 39 ARALRDAGFEVVYTGLR 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.396
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,725,699
Number of extensions: 355790
Number of successful extensions: 620
Number of sequences better than 10.0: 1
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 43
Length of query: 378
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 283
Effective length of database: 4,049,298
Effective search space: 1145951334
Effective search space used: 1145951334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)