RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy713
         (378 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 58.2 bits (139), Expect = 4e-10
 Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 15/164 (9%)

Query: 134 LVNGGIAGIIGVSVVFPLDLVKTRLQNQTVGADGKKQYHSIKISPFFVSAGEVVPKISAT 193
            + GG+A  I  + V P++ VK  LQ Q        +         +    + V +I   
Sbjct: 10  FLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQ-------YKGIIDCVVRIPKE 62

Query: 194 SIALELVKTKGIVGLYKGTTATALRDVSFSVVYFPLFAQLNSLGPRKKDGSGEAAFYWSF 253
              L   +      +    T             F    +   LG   +       F  + 
Sbjct: 63  QGFLSFWRGNLANVIRYFPT-------QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNL 115

Query: 254 LSGCISGSMAALSVNPFDVIKTRLQV-LKKGQGELHYNGVSDAI 296
            SG  +G+ +   V P D  +TRL   + KG  +  + G+ + I
Sbjct: 116 ASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCI 159



 Score = 51.3 bits (121), Expect = 6e-08
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 249 FYWSFLSGCISGSMAALSVNPFDVIKTRLQV---LKKGQGELHYNGVSDAIIE 298
           F   FL+G ++ +++  +V P + +K  LQV    K+   E  Y G+ D ++ 
Sbjct: 6   FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVR 58



 Score = 45.1 bits (105), Expect = 6e-06
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 298 EPLSLVRGMAAGGLAGLCQIVITTPMELLKIQMQ 331
           + LS ++   AGG+A         P+E +K+ +Q
Sbjct: 2   QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQ 35



 Score = 37.8 bits (86), Expect = 0.001
 Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 18/124 (14%)

Query: 104 AGLCQIVITTPMELLKIQMQDAGRVMAQAKLVNGGIAGIIGVSVVFPLDLVKTRLQNQTV 163
             + +       +  K  + D   V      +       +   V +P D V+ R+  Q+ 
Sbjct: 182 IIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSG 241

Query: 164 GADGKKQYHSIKISPFFVSAGEVVPKISATSIALELVKTKGIVGLYKGTTATALRDVSFS 223
                  Y                          ++ K +G    +KG  +  LR +  +
Sbjct: 242 RKGADIMYTGT------------------VDCWRKIAKDEGPKAFFKGAWSNVLRGMGGA 283

Query: 224 VVYF 227
            V  
Sbjct: 284 FVLV 287


>d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate
           deacetylase, NagA, catalytic domain {Thermotoga maritima
           [TaxId: 2336]}
          Length = 288

 Score = 28.7 bits (62), Expect = 1.1
 Identities = 9/77 (11%), Positives = 23/77 (29%)

Query: 291 GVSDAIIEPLSLVRGMAAGGLAGLCQIVITTPMELLKIQMQDAGRVMAQAKLAFFKGGAC 350
           G      +   +   + + G+       ++T +E +K  ++ A   + +       G   
Sbjct: 12  GADTMNCDFSEMEEFLYSQGVTTFLATTVSTSLEKMKEILRKARDYILENPSTSLLGVHL 71

Query: 351 RMMVIAPLFGIAQMVYF 367
               I+     A     
Sbjct: 72  EGPYISKEKKGAHSEKH 88


>d2hwja1 d.268.1.3 (A:4-204) Hypothetical protein Atu1540
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 201

 Score = 26.2 bits (58), Expect = 5.1
 Identities = 7/30 (23%), Positives = 10/30 (33%)

Query: 78  DFFRHHLAPSNGEPLSLVRGMAAGGLAGLC 107
           D        +  E + L +   A  L G C
Sbjct: 169 DLLSDSFDDALAEAMKLAKSREARHLPGWC 198


>d1h21a_ a.138.1.3 (A:) Dimeric di-heme split-soret cytochrome c
           {Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]}
          Length = 240

 Score = 26.1 bits (57), Expect = 6.0
 Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 15/56 (26%)

Query: 66  ITPEKAIKLAANDFFRH--------------HLAPSNGEPLS-LVRGMAAGGLAGL 106
           + P++  ++A + ++                 +    G P +     M      G+
Sbjct: 17  LDPKECAQVAYDGYWYKGFGCGFGAFYSIVGLMGEKYGAPYNQFPFAMLEANKGGI 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,322,309
Number of extensions: 59333
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 9
Length of query: 378
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 291
Effective length of database: 1,213,086
Effective search space: 353008026
Effective search space used: 353008026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)