BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7132
         (103 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
           Glu
 pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
           Glu
 pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
           Glu
 pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
           Glu
 pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
           Glu
 pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
           Glu
 pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Eu3+
 pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Eu3+
 pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Eu3+
 pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Eu3+
 pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Eu3+
 pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
           Complexed With Eu3+
 pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
 pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
 pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
 pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
 pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
 pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
 pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
 pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
           Epicatechin-3-Gallate (Ecg)
          Length = 501

 Score = 26.9 bits (58), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 5   GGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAG 42
           G  +FHGI+ F N  S M+   LGMT     K+ ++ G
Sbjct: 216 GRGVFHGIENFINEASYMS--ILGMTPGFGDKTFVVQG 251


>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
 pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
 pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
 pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
 pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
 pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
          Length = 505

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 5   GGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAG 42
           G  +FHGI+ F N  S M+   LGMT     K+ ++ G
Sbjct: 220 GRGVFHGIENFINEASYMS--ILGMTPGFGDKTFVVQG 255


>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
           Complex
 pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
 pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
          Length = 496

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 5   GGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAG 42
           G  +FHGI+ F N  S M+   LGMT     K+ ++ G
Sbjct: 211 GRGVFHGIENFINEASYMS--ILGMTPGFGDKTFVVQG 246


>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
           Dehydrogenase
 pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
           Dehydrogenase
 pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
           Dehydrogenase
 pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
           Dehydrogenase
 pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
           Dehydrogenase
 pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
           Dehydrogenase
          Length = 496

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 5   GGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAG 42
           G  +FHGI+ F N  S M+   LGMT     K+ ++ G
Sbjct: 211 GRGVFHGIENFINEASYMS--ILGMTPGFGDKTFVVQG 246


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,060,995
Number of Sequences: 62578
Number of extensions: 110391
Number of successful extensions: 273
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 6
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)