Query psy7132
Match_columns 103
No_of_seqs 102 out of 657
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:59:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00236 mitochondrial import 100.0 8.3E-32 1.8E-36 190.3 10.9 100 1-102 25-124 (164)
2 TIGR00980 3a0801so1tim17 mitoc 100.0 1.4E-31 3E-36 190.2 10.5 100 1-102 23-122 (170)
3 TIGR00983 3a0801s02tim23 mitoc 100.0 6E-30 1.3E-34 178.8 11.2 102 1-102 44-147 (149)
4 KOG1652|consensus 100.0 3.9E-30 8.5E-35 182.8 0.4 100 1-102 23-122 (183)
5 PF02466 Tim17: Tim17/Tim22/Ti 99.9 8.3E-23 1.8E-27 137.7 10.3 100 2-101 13-118 (128)
6 KOG3324|consensus 99.9 9.6E-22 2.1E-26 141.7 7.0 100 2-101 88-189 (206)
7 KOG3225|consensus 99.8 2.3E-19 4.9E-24 125.8 3.2 95 1-95 52-151 (168)
8 COG5596 TIM22 Mitochondrial im 99.4 4.7E-15 1E-19 106.3 -2.6 87 5-94 85-173 (191)
9 COG5596 TIM22 Mitochondrial im 98.3 2.3E-08 5E-13 72.0 -4.5 86 1-88 44-130 (191)
10 KOG4608|consensus 98.0 5.8E-07 1.3E-11 67.2 -2.3 69 31-99 125-193 (270)
11 KOG1398|consensus 93.4 0.13 2.8E-06 41.4 4.3 49 35-83 297-345 (460)
12 PF10247 Romo1: Reactive mitoc 88.7 0.44 9.4E-06 29.3 2.3 50 2-56 18-67 (67)
13 KOG4096|consensus 85.2 0.64 1.4E-05 29.0 1.7 48 5-57 25-72 (75)
14 PF02466 Tim17: Tim17/Tim22/Ti 82.5 6.6 0.00014 25.8 6.0 73 29-101 42-114 (128)
15 PF12732 YtxH: YtxH-like prote 82.0 4.1 9E-05 24.7 4.4 35 2-36 4-41 (74)
16 COG4980 GvpP Gas vesicle prote 68.5 24 0.00052 23.8 5.6 19 2-20 10-28 (115)
17 KOG1398|consensus 64.3 13 0.00027 30.4 4.2 49 33-81 74-122 (460)
18 PF10439 Bacteriocin_IIc: Bact 56.9 39 0.00085 20.0 4.7 44 55-98 10-57 (65)
19 KOG0764|consensus 53.9 40 0.00087 26.3 5.3 49 36-84 72-122 (299)
20 TIGR00983 3a0801s02tim23 mitoc 50.7 83 0.0018 21.9 6.7 58 2-62 41-103 (149)
21 PF09877 DUF2104: Predicted me 39.3 1.1E+02 0.0024 20.1 6.2 67 3-86 12-78 (99)
22 PF13436 Gly-zipper_OmpA: Glyc 32.5 81 0.0018 20.9 3.6 34 65-98 50-85 (118)
23 PRK10404 hypothetical protein; 31.2 1.5E+02 0.0033 19.2 6.9 58 22-83 39-96 (101)
24 COG3558 Uncharacterized protei 29.6 22 0.00047 24.6 0.4 17 54-70 11-27 (154)
25 PF05957 DUF883: Bacterial pro 28.9 1.5E+02 0.0032 18.4 6.9 58 22-83 32-89 (94)
26 KOG0756|consensus 28.1 19 0.00041 28.1 -0.1 49 36-84 175-226 (299)
27 KOG0380|consensus 27.7 37 0.00081 28.5 1.5 27 46-72 367-398 (523)
28 PF05433 Rick_17kDa_Anti: Glyc 27.0 1E+02 0.0022 16.9 2.8 19 64-82 20-38 (42)
29 COG4575 ElaB Uncharacterized c 26.5 2E+02 0.0043 19.1 6.5 58 22-83 42-99 (104)
30 PF07080 DUF1348: Protein of u 26.3 18 0.00039 25.2 -0.4 17 54-70 9-25 (143)
31 TIGR03789 pdsO proteobacterial 26.3 91 0.002 23.4 3.3 32 67-99 40-72 (239)
32 PLN03242 diacylglycerol o-acyl 25.8 57 0.0012 26.5 2.3 20 52-71 277-301 (410)
33 PLN02401 diacylglycerol o-acyl 23.0 70 0.0015 26.4 2.3 20 52-71 302-326 (446)
34 PF14689 SPOB_a: Sensor_kinase 21.6 58 0.0013 19.0 1.2 19 53-71 8-27 (62)
35 PF06730 FAM92: FAM92 protein; 21.1 2E+02 0.0044 21.4 4.2 43 33-75 16-58 (219)
36 PF06242 DUF1013: Protein of u 20.4 83 0.0018 21.9 1.9 54 13-70 57-111 (140)
37 TIGR02662 dinitro_DRAG ADP-rib 20.1 60 0.0013 24.3 1.3 27 2-28 243-269 (287)
38 PF06122 TraH: Conjugative rel 20.1 1.1E+02 0.0024 24.0 2.8 49 24-73 71-119 (361)
39 KOG1360|consensus 20.1 23 0.00051 29.3 -1.0 59 24-96 356-414 (570)
No 1
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.97 E-value=8.3e-32 Score=190.33 Aligned_cols=100 Identities=50% Similarity=0.952 Sum_probs=97.3
Q ss_pred CchhHhhHHHHHHhhhhCCccchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHH
Q psy7132 1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGI 80 (103)
Q Consensus 1 ~G~~~G~~~g~~~g~~~~p~~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~ 80 (103)
||++.|++|++++|+||+|.+ +|+++.++.+++|+|.++++|++|+++|+++||.++++|+|||+||++++|++||++
T Consensus 25 ~G~vgG~~~~~~~G~rnsp~g--~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~K~D~~Nsi~AG~~TGa~ 102 (164)
T PTZ00236 25 MGCIGGFIWHFLKGMRNSPKG--ERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGV 102 (164)
T ss_pred HHHHHHHHHHHHHHHHhCCCc--chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 689999999999999999977 899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcChHHHHHHHHHHHHhhc
Q psy7132 81 LAARNGVPAMAGSALIGAFYLN 102 (103)
Q Consensus 81 ~~~~~g~~~~~~~~~~g~~~~~ 102 (103)
+++|.||++++.++++|+++++
T Consensus 103 l~~r~G~~~~~~~a~~Gg~~~~ 124 (164)
T PTZ00236 103 LAIRGGWRSAVRNAIFGGILLG 124 (164)
T ss_pred HHHhcChHHHHHHHHHHHHHHH
Confidence 9999999999999999999975
No 2
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.97 E-value=1.4e-31 Score=190.25 Aligned_cols=100 Identities=59% Similarity=1.083 Sum_probs=97.2
Q ss_pred CchhHhhHHHHHHhhhhCCccchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHH
Q psy7132 1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGI 80 (103)
Q Consensus 1 ~G~~~G~~~g~~~g~~~~p~~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~ 80 (103)
||+++|++|++++|+||+|.+ +|+++.++++++|+|+++++|++|+++|+++||.++++|+|||+||++++|++||++
T Consensus 23 ~G~~~G~~~g~~~G~rnsp~g--~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~R~KeD~~NsiiAG~~TGa~ 100 (170)
T TIGR00980 23 MGTIGGSIFQAFKGFRNSPKG--EKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFLTGAA 100 (170)
T ss_pred HHHHHHHHHHHHHHhhcCCcc--chhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 689999999999999999976 899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcChHHHHHHHHHHHHhhc
Q psy7132 81 LAARNGVPAMAGSALIGAFYLN 102 (103)
Q Consensus 81 ~~~~~g~~~~~~~~~~g~~~~~ 102 (103)
|+.|.|+++++.++++++++|+
T Consensus 101 l~~r~G~~a~~~~aa~gg~~la 122 (170)
T TIGR00980 101 LAVRGGPRAMRGSAILGACILA 122 (170)
T ss_pred HHhccChHHHHHHHHHHHHHHH
Confidence 9999999999999999999986
No 3
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.97 E-value=6e-30 Score=178.77 Aligned_cols=102 Identities=25% Similarity=0.378 Sum_probs=98.1
Q ss_pred CchhHhhHHHHHHhhhhCCcc--chhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHH
Q psy7132 1 MGLIGGALFHGIKGFRNAPSG--MNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATG 78 (103)
Q Consensus 1 ~G~~~G~~~g~~~g~~~~p~~--~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tG 78 (103)
||++.|+++|+++|++++|.+ .|+|+++++|++.+++++++++|++++.+|+.+||.++++|+|||+||+++||++||
T Consensus 44 ~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~~R~k~D~~Nsv~AGa~TG 123 (149)
T TIGR00983 44 TGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEATRGKHDDFNSVAAGALTG 123 (149)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHH
Confidence 689999999999999999863 589999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcChHHHHHHHHHHHHhhc
Q psy7132 79 GILAARNGVPAMAGSALIGAFYLN 102 (103)
Q Consensus 79 a~~~~~~g~~~~~~~~~~g~~~~~ 102 (103)
++|++++||++++.++++|+++++
T Consensus 124 al~~~~~G~r~~~~g~~~G~~l~~ 147 (149)
T TIGR00983 124 ALYKSTRGLRGMARSGALGATAAG 147 (149)
T ss_pred HHHHhccChHHHHHHhHHHHHHhh
Confidence 999999999999999999998875
No 4
>KOG1652|consensus
Probab=99.95 E-value=3.9e-30 Score=182.79 Aligned_cols=100 Identities=61% Similarity=1.068 Sum_probs=98.0
Q ss_pred CchhHhhHHHHHHhhhhCCccchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHH
Q psy7132 1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGI 80 (103)
Q Consensus 1 ~G~~~G~~~g~~~g~~~~p~~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~ 80 (103)
||++.|.+|++++|++|+|.+ .|+.+.++.++.|+|.++++|++|+++||.+||.+..+|+|||+||++++|++||.+
T Consensus 23 mg~igG~~f~~ikG~~nap~G--~r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~~R~KeDpwNsivsGa~TGg~ 100 (183)
T KOG1652|consen 23 MGTIGGSVFQLIKGFRNAPSG--ARLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVAIRKKEDPWNSIVSGAATGGL 100 (183)
T ss_pred hcccccceeeeeeeeecCCcc--cccccchhhhhccCcccccceeeeechhhHHHHHHHHHhcccchHHHHHHHhhccce
Confidence 799999999999999999998 799999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcChHHHHHHHHHHHHhhc
Q psy7132 81 LAARNGVPAMAGSALIGAFYLN 102 (103)
Q Consensus 81 ~~~~~g~~~~~~~~~~g~~~~~ 102 (103)
+..|.|+++++.++++++++|+
T Consensus 101 La~r~g~~a~~~sa~~~g~~la 122 (183)
T KOG1652|consen 101 LAARGGPKAMLTSAITGGLLLA 122 (183)
T ss_pred eeccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999985
No 5
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.89 E-value=8.3e-23 Score=137.72 Aligned_cols=100 Identities=35% Similarity=0.715 Sum_probs=85.3
Q ss_pred chhHhhHHHHHHhhh----hCCc--cchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHH
Q psy7132 2 GLIGGALFHGIKGFR----NAPS--GMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGA 75 (103)
Q Consensus 2 G~~~G~~~g~~~g~~----~~p~--~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~ 75 (103)
|.+.|.++|.+.+.+ ..++ ..+++++..++.+.+++++.+.+|+.++++|+.+||.+|++|+|||+||++++|+
T Consensus 13 g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~k~D~~N~~~aG~ 92 (128)
T PF02466_consen 13 GFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRGKDDPWNSAIAGA 92 (128)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 344555555555544 2222 2568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcChHHHHHHHHHHHHhh
Q psy7132 76 ATGGILAARNGVPAMAGSALIGAFYL 101 (103)
Q Consensus 76 ~tGa~~~~~~g~~~~~~~~~~g~~~~ 101 (103)
+||++++.+.+++.++.++++++++.
T Consensus 93 ~aGa~~~~~~g~~~~~~~~~~~a~~~ 118 (128)
T PF02466_consen 93 AAGAVLGLRSGPRGMASGAALGAAFA 118 (128)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHH
Confidence 99999999999999999988888764
No 6
>KOG3324|consensus
Probab=99.86 E-value=9.6e-22 Score=141.68 Aligned_cols=100 Identities=24% Similarity=0.368 Sum_probs=94.9
Q ss_pred chhHhhHHHHHHhhhhCCcc--chhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHH
Q psy7132 2 GLIGGALFHGIKGFRNAPSG--MNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGG 79 (103)
Q Consensus 2 G~~~G~~~g~~~g~~~~p~~--~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa 79 (103)
|+..|+.+|++.|+++.|.. .|.|++.++|++.++++.++++.++++.+|+.+|..++..|+|||++|++.||++||+
T Consensus 88 G~~iGa~~G~~~Glk~~e~~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~lnsv~AGalTGa 167 (206)
T KOG3324|consen 88 GSAIGAFNGLILGLKNTENGASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLNSVAAGALTGA 167 (206)
T ss_pred chhhhhHHHHHHhhhcCCCCCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhh
Confidence 67899999999999998874 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcChHHHHHHHHHHHHhh
Q psy7132 80 ILAARNGVPAMAGSALIGAFYL 101 (103)
Q Consensus 80 ~~~~~~g~~~~~~~~~~g~~~~ 101 (103)
+|++.+|+|++..++.+++++.
T Consensus 168 lyrs~~Glr~~av~ga~g~~aa 189 (206)
T KOG3324|consen 168 LYRSTRGLRAAAVAGAVGGTAA 189 (206)
T ss_pred hhhcCCCchHHHHHHHHHHHHH
Confidence 9999999999999888887754
No 7
>KOG3225|consensus
Probab=99.76 E-value=2.3e-19 Score=125.76 Aligned_cols=95 Identities=29% Similarity=0.352 Sum_probs=82.2
Q ss_pred CchhHhhHHHHHHhhhh----CCcc-chhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHH
Q psy7132 1 MGLIGGALFHGIKGFRN----APSG-MNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGA 75 (103)
Q Consensus 1 ~G~~~G~~~g~~~g~~~----~p~~-~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~ 75 (103)
+|...|.++|++.+..+ -|+. .+.-+.+.++.+.+|...++++|+.+|.+|+++||++|++|.|+||+|++++||
T Consensus 52 ~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RAK~D~~NgaiaG~ 131 (168)
T KOG3225|consen 52 TGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLIESFRAKSDWYNGAIAGC 131 (168)
T ss_pred cccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHHHHHHhhhchhcceeeee
Confidence 57788999998888766 2421 234445668999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcChHHHHHHHH
Q psy7132 76 ATGGILAARNGVPAMAGSAL 95 (103)
Q Consensus 76 ~tGa~~~~~~g~~~~~~~~~ 95 (103)
+||+.++.|.||++.+.++.
T Consensus 132 vtGg~l~~raGp~a~~~G~a 151 (168)
T KOG3225|consen 132 VTGGSLGYRAGPKAAAIGCA 151 (168)
T ss_pred eeccchhhcccchhhhhchh
Confidence 99999999999999888544
No 8
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.7e-15 Score=106.32 Aligned_cols=87 Identities=23% Similarity=0.316 Sum_probs=76.1
Q ss_pred HhhHHHHHHhhhhCCc--cchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHHhh
Q psy7132 5 GGALFHGIKGFRNAPS--GMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILA 82 (103)
Q Consensus 5 ~G~~~g~~~g~~~~p~--~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~~~ 82 (103)
+|++|| ++++.+. +.++|++.+++++.+|++.+++++++++.+|...||.++.+|+|+|+.|++.+|..||+.++
T Consensus 85 fg~vwG---gl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~ 161 (191)
T COG5596 85 FGGVWG---GLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALA 161 (191)
T ss_pred cccccc---ceeeccccchHHHHHhhccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHH
Confidence 445555 4443332 26799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcChHHHHHHH
Q psy7132 83 ARNGVPAMAGSA 94 (103)
Q Consensus 83 ~~~g~~~~~~~~ 94 (103)
.+.++|++..+.
T Consensus 162 ~~~g~qa~~~~~ 173 (191)
T COG5596 162 SSAGPQAMPMGG 173 (191)
T ss_pred hhccccccccCc
Confidence 999999988743
No 9
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.3e-08 Score=72.04 Aligned_cols=86 Identities=31% Similarity=0.408 Sum_probs=77.6
Q ss_pred CchhHhhHHHHHHhhhhCCccchhhhhhHHHHHhhhhhhhHHHHH-HHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHH
Q psy7132 1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFA-VWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGG 79 (103)
Q Consensus 1 ~G~~~G~~~g~~~g~~~~p~~~~~r~~~~l~~~~~~~~~~a~~~a-~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa 79 (103)
|+++...++.-++|.+..|+. ++..+.+..-+.+.+-.+.+|+ +||++|+.++|..+++|.|+|+||....|+.||.
T Consensus 44 ~~~i~k~~~s~l~G~~~g~~~--g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~ 121 (191)
T COG5596 44 YSCIGKSALSGLKGFRLGGPS--GGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGK 121 (191)
T ss_pred hcchhhhhhhccccccccccc--ccchhhcccccccccccCccccccccceeeccccchHHHHHhhcccccccccccccc
Confidence 568899999999999999977 7777888888888999999999 8999999999999999999999999999999999
Q ss_pred HhhhhcChH
Q psy7132 80 ILAARNGVP 88 (103)
Q Consensus 80 ~~~~~~g~~ 88 (103)
.++.+....
T Consensus 122 n~GvlGl~y 130 (191)
T COG5596 122 NLGVLGLIY 130 (191)
T ss_pred ccceeeeec
Confidence 888776533
No 10
>KOG4608|consensus
Probab=97.96 E-value=5.8e-07 Score=67.24 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=58.7
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHH
Q psy7132 31 TTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAF 99 (103)
Q Consensus 31 ~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~~~~~~g~~~~~~~~~~g~~ 99 (103)
+.+.+-+-+++-..|++...|-++...+..+|+|+|.||-+.+|.+||++|++.-|++-++.+.++|++
T Consensus 125 r~farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~aa~vilG~~ 193 (270)
T KOG4608|consen 125 RGFARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLAAGVILGAL 193 (270)
T ss_pred HHHhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHhhcceeehh
Confidence 336667777788888999999999999999999999999999999999999999987777666555543
No 11
>KOG1398|consensus
Probab=93.42 E-value=0.13 Score=41.44 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=42.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHHhhh
Q psy7132 35 QKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAA 83 (103)
Q Consensus 35 ~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~~~~ 83 (103)
+..-+++.-++.+-++|..+.|.+.+++.+||..|+++||.+++-.+..
T Consensus 297 renlqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmf 345 (460)
T KOG1398|consen 297 RENLQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMF 345 (460)
T ss_pred cccchhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeee
Confidence 3455677788999999999999999999999999999999998865443
No 12
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=88.66 E-value=0.44 Score=29.25 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=28.9
Q ss_pred chhHhhHHHHHHhhhhCCccchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q psy7132 2 GLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDC 56 (103)
Q Consensus 2 G~~~G~~~g~~~g~~~~p~~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~ 56 (103)
|.+.|.++|.++.+|.-+ +-++.++.+.+.....+.+|+.+=.+=+.++|
T Consensus 18 G~~~G~l~G~~~~~r~g~-----~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IRc 67 (67)
T PF10247_consen 18 GGAFGALFGTFSAFRYGA-----RGRGLMRTLGKYMLGSGATFGFFMSIGSVIRC 67 (67)
T ss_pred HhhhhhhhhhHHHhccCC-----CCcchHhHHhHHHhcchhHHHHHHhhhccccC
Confidence 334444555555555543 33456666777777777788776655544443
No 13
>KOG4096|consensus
Probab=85.21 E-value=0.64 Score=28.97 Aligned_cols=48 Identities=35% Similarity=0.589 Sum_probs=32.5
Q ss_pred HhhHHHHHHhhhhCCccchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhH
Q psy7132 5 GGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCS 57 (103)
Q Consensus 5 ~G~~~g~~~g~~~~p~~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~ 57 (103)
.|.+||-++.+|.-|.+ ++.++.+.+.....+.+|+.+-++=+.++|.
T Consensus 25 ~G~lfGgf~~lR~g~~g-----~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 25 TGALFGGFAALRYGPRG-----RGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred hhhhccchhheeecCCh-----hHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence 34445555555665544 4556667777788888999888888877775
No 14
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=82.54 E-value=6.6 Score=25.75 Aligned_cols=73 Identities=11% Similarity=-0.023 Sum_probs=43.0
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhh
Q psy7132 29 MTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101 (103)
Q Consensus 29 ~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~~~~~~g~~~~~~~~~~g~~~~ 101 (103)
.++.+.++..+.+..++..-+.|.++-+.++..=++-=-.|-.+=..++|++-+.--+.+.-....+.+++..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~ 114 (128)
T PF02466_consen 42 RLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRGKDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALG 114 (128)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 4455555555555567777777777776666655543345666666666666666555544444555554443
No 15
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=82.02 E-value=4.1 Score=24.68 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=26.2
Q ss_pred chhHhhHHHHHHhhhhCCc-c--chhhhhhHHHHHhhh
Q psy7132 2 GLIGGALFHGIKGFRNAPS-G--MNRRFLGMTTTIKQK 36 (103)
Q Consensus 2 G~~~G~~~g~~~g~~~~p~-~--~~~r~~~~l~~~~~~ 36 (103)
|++.|++.|..-++..+|. + +|+++....+.+..+
T Consensus 4 g~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~~ 41 (74)
T PF12732_consen 4 GFLAGAAAGAAAGLLFAPKSGKETREKLKDKAEDLKDK 41 (74)
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 7899999999999999997 4 456666655554443
No 16
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=68.52 E-value=24 Score=23.79 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=17.7
Q ss_pred chhHhhHHHHHHhhhhCCc
Q psy7132 2 GLIGGALFHGIKGFRNAPS 20 (103)
Q Consensus 2 G~~~G~~~g~~~g~~~~p~ 20 (103)
|.+.|++.|+..++.-+|.
T Consensus 10 G~liGgiiGa~aaLL~AP~ 28 (115)
T COG4980 10 GILIGGIIGAAAALLFAPK 28 (115)
T ss_pred HHHHHHHHHHHHHHHhCCc
Confidence 7889999999999999997
No 17
>KOG1398|consensus
Probab=64.35 E-value=13 Score=30.37 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=39.8
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHHh
Q psy7132 33 IKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGIL 81 (103)
Q Consensus 33 ~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~~ 81 (103)
+.-...+.+.-+..-...|-...|.+.+.++|..+||+.+++++.+.-.
T Consensus 74 ~~~~~cqs~lflvtn~~~f~al~C~lRkwlgkftp~t~glv~s~las~i 122 (460)
T KOG1398|consen 74 VREEACQSGLFLVTNTGSFHALRCCLRKWLGKFTPLTSGLVGSVLASSI 122 (460)
T ss_pred HHHHHHhhceeeeechHHHHHHHHHHHHHhcccCcccHHHHHHHHhhhh
Confidence 4445556666667777889999999999999999999999999877543
No 18
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=56.90 E-value=39 Score=20.00 Aligned_cols=44 Identities=25% Similarity=0.353 Sum_probs=28.1
Q ss_pred HhHhhhhhcc---CChHHHHHHHHHHHHHhhhhcChH-HHHHHHHHHH
Q psy7132 55 DCSLVYVRKK---EDPWNSIISGAATGGILAARNGVP-AMAGSALIGA 98 (103)
Q Consensus 55 ~~~~~~~R~k---~D~~N~~~aG~~tGa~~~~~~g~~-~~~~~~~~g~ 98 (103)
+.-++++-+= .|.+..+.+++.+|+..+...++. ..+.+++.++
T Consensus 10 ~eeL~~I~GG~~~~~~~~~~~~~~~~G~~~G~~~g~~~g~~~Ga~~G~ 57 (65)
T PF10439_consen 10 EEELSSIEGGNSWGNCVGGVGGGAAGGAAAGAAGGPPVGAVAGAIVGA 57 (65)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 3445555543 566778888899999999888853 3333444443
No 19
>KOG0764|consensus
Probab=53.91 E-value=40 Score=26.28 Aligned_cols=49 Identities=8% Similarity=0.018 Sum_probs=36.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHhhhhhccC--ChHHHHHHHHHHHHHhhhh
Q psy7132 36 KSPILAGNFAVWGAMFSTIDCSLVYVRKKE--DPWNSIISGAATGGILAAR 84 (103)
Q Consensus 36 ~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~--D~~N~~~aG~~tGa~~~~~ 84 (103)
.....+-+|++-=.+|-..+..+...+... ++.+.+.+++.+|++--.-
T Consensus 72 ~v~G~~~sWgiYF~~Y~~~K~~~~~~~~~~~l~~~~~l~sa~~AGa~t~~l 122 (299)
T KOG0764|consen 72 NVLGSAPSWGLYFFFYDFLKSFITEGFNSGLLSVLANLSSAAEAGAATTIL 122 (299)
T ss_pred HHHhchhhHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHhhhHHHHHh
Confidence 334455677777778888888887777655 8889999999999875443
No 20
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=50.72 E-value=83 Score=21.89 Aligned_cols=58 Identities=7% Similarity=0.000 Sum_probs=40.1
Q ss_pred chhHhhHHHHHHhhhhCCccchh--h---hhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhh
Q psy7132 2 GLIGGALFHGIKGFRNAPSGMNR--R---FLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVR 62 (103)
Q Consensus 2 G~~~G~~~g~~~g~~~~p~~~~~--r---~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R 62 (103)
..++|.+.|.+.|+++. .+. . ....+|.+.+...+.+..++---++...+-+.+|..=
T Consensus 41 ay~~G~~~Gg~~Gl~~G---~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i 103 (149)
T TIGR00983 41 CYLTGLAIGALNGLRLG---LKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSII 103 (149)
T ss_pred HHHHHHHHHHHHHHHHH---HhhCCCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888776 332 1 1345677777777777777777777777777776643
No 21
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=39.27 E-value=1.1e+02 Score=20.09 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=47.3
Q ss_pred hhHhhHHHHHHhhhhCCccchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHHhh
Q psy7132 3 LIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILA 82 (103)
Q Consensus 3 ~~~G~~~g~~~g~~~~p~~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~~~ 82 (103)
++.|++.|+.-+.++=+.+..+|.. ...+-..+++|.++-.+++- ..+.|-.++-++.|..++
T Consensus 12 fiiGs~~GL~ySYkKy~~P~v~k~i----------D~~ALv~aiiG~~~~~vn~~-------~~~~~~~ig~~li~~~~G 74 (99)
T PF09877_consen 12 FIIGSFLGLEYSYKKYREPFVEKKI----------DKLALVLAIIGGLILAVNSP-------SSPILYTIGAFLIGFPLG 74 (99)
T ss_pred HHHHHHHHHHHHHHHhccchhhhcc----------cHHHHHHHHHHHHHHHhcCc-------chhHHHHHHHHHHhhhcc
Confidence 5677777777776664433334433 34445778888887777766 556788889999999999
Q ss_pred hhcC
Q psy7132 83 ARNG 86 (103)
Q Consensus 83 ~~~g 86 (103)
+|.|
T Consensus 75 mRPG 78 (99)
T PF09877_consen 75 MRPG 78 (99)
T ss_pred CCCC
Confidence 9988
No 22
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=32.53 E-value=81 Score=20.89 Aligned_cols=34 Identities=32% Similarity=0.280 Sum_probs=16.5
Q ss_pred CChHHHHHHHHHHHHHhhhhcC--hHHHHHHHHHHH
Q psy7132 65 EDPWNSIISGAATGGILAARNG--VPAMAGSALIGA 98 (103)
Q Consensus 65 ~D~~N~~~aG~~tGa~~~~~~g--~~~~~~~~~~g~ 98 (103)
++.....+.|++.|++++.-.| .+..+.++.+|+
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~~ga~~GAa~Ga 85 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNGRGAAIGAAAGA 85 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHH
Confidence 4444555555566666665443 233344444433
No 23
>PRK10404 hypothetical protein; Provisional
Probab=31.21 E-value=1.5e+02 Score=19.21 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=34.7
Q ss_pred chhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHHhhh
Q psy7132 22 MNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAA 83 (103)
Q Consensus 22 ~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~~~~ 83 (103)
+|.|....+++.+.+........ ..-.=...+++-+.+| |.||-++--++..|.++++
T Consensus 39 lR~r~~~~L~~ar~~l~~~~~~~--~~~~k~aa~~td~yV~--e~Pw~avGiaagvGlllG~ 96 (101)
T PRK10404 39 LKARAEKALDDVKKRVSQASDSY--YYRAKQAVYRADDYVH--EKPWQGIGVGAAVGLVLGL 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHH
Confidence 56777777776665444333211 1111334556666666 5699888877777877764
No 24
>COG3558 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.60 E-value=22 Score=24.58 Aligned_cols=17 Identities=41% Similarity=0.722 Sum_probs=14.7
Q ss_pred HHhHhhhhhccCChHHH
Q psy7132 54 IDCSLVYVRKKEDPWNS 70 (103)
Q Consensus 54 ~~~~~~~~R~k~D~~N~ 70 (103)
.|.+++++|-.+|.||+
T Consensus 11 ~eta~~kvr~aed~wns 27 (154)
T COG3558 11 AETAIQKVRMAEDAWNS 27 (154)
T ss_pred HHHHHHHHHHhHhcccc
Confidence 46788999999999996
No 25
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=28.87 E-value=1.5e+02 Score=18.41 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=33.0
Q ss_pred chhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHHhhh
Q psy7132 22 MNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAA 83 (103)
Q Consensus 22 ~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~~~~ 83 (103)
.++++...+++...+....... +---.=...+++-+.+| +.||-++.-++..|.++++
T Consensus 32 ~r~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~V~--e~P~~svgiAagvG~llG~ 89 (94)
T PF05957_consen 32 ARDRAEEALDDARDRAEDAADQ--AREQAREAAEQTEDYVR--ENPWQSVGIAAGVGFLLGL 89 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HChHHHHHHHHHHHHHHHH
Confidence 3556666666555555443322 11112233444455555 6799998888888888764
No 26
>KOG0756|consensus
Probab=28.08 E-value=19 Score=28.10 Aligned_cols=49 Identities=22% Similarity=0.195 Sum_probs=30.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHH---HHHHHHHHHHHhhhh
Q psy7132 36 KSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWN---SIISGAATGGILAAR 84 (103)
Q Consensus 36 ~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N---~~~aG~~tGa~~~~~ 84 (103)
..-+.+.|+|.-=.+|..++..+...-++||++| +.+.|+++|++--+.
T Consensus 175 t~~rQ~tNqa~rF~~~~~lk~~~~~~~~~~~~l~~~~~~~~gaiaGa~sv~~ 226 (299)
T KOG0756|consen 175 TAARQGTNQAIRFTLYTPLKDLLRGDTDDDKPLNPLSSGISGAIAGAASVFG 226 (299)
T ss_pred HHHHhcccccceehhhHHHHHHHhccCCCccccCchhhhhhhhhcccccccc
Confidence 3445666777776667777766666555566555 556667777664444
No 27
>KOG0380|consensus
Probab=27.66 E-value=37 Score=28.47 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhHhhhhh--cc---CChHHHHH
Q psy7132 46 VWGAMFSTIDCSLVYVR--KK---EDPWNSII 72 (103)
Q Consensus 46 ~~g~~fs~~~~~~~~~R--~k---~D~~N~~~ 72 (103)
......+..+|..|..| ++ .||||+.-
T Consensus 367 FY~ifh~~LNa~AEl~rFaDR~FY~DWWNs~s 398 (523)
T KOG0380|consen 367 FYLIFHCWLNAVAELTRFADREFYGDWWNSVS 398 (523)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHhhhccCc
Confidence 34555677788889998 33 89999853
No 28
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=26.99 E-value=1e+02 Score=16.88 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=10.2
Q ss_pred cCChHHHHHHHHHHHHHhh
Q psy7132 64 KEDPWNSIISGAATGGILA 82 (103)
Q Consensus 64 k~D~~N~~~aG~~tGa~~~ 82 (103)
+++.+...+.|.+.|++++
T Consensus 20 ~~g~~~g~~~Ga~~Ga~~G 38 (42)
T PF05433_consen 20 GNGRTLGAVAGAVAGALIG 38 (42)
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 3455555555555565554
No 29
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=26.51 E-value=2e+02 Score=19.07 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=39.9
Q ss_pred chhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHHhhh
Q psy7132 22 MNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAA 83 (103)
Q Consensus 22 ~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~~~~ 83 (103)
+|.|..+.|+.++.+..... =++.--.=...+|+=+.+| |-||-++--++..|.++++
T Consensus 42 lR~r~~~~Lk~~r~rl~~~~--d~v~~~sk~a~~~tD~yV~--e~PWq~VGvaAaVGlllGl 99 (104)
T COG4575 42 LRSKAESALKEARDRLGDTG--DAVVQRSKAAADATDDYVR--ENPWQGVGVAAAVGLLLGL 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHHHH
Confidence 57788888888777666553 2344445556677777777 6689988777777777663
No 30
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=26.34 E-value=18 Score=25.23 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=14.8
Q ss_pred HHhHhhhhhccCChHHH
Q psy7132 54 IDCSLVYVRKKEDPWNS 70 (103)
Q Consensus 54 ~~~~~~~~R~k~D~~N~ 70 (103)
.|.+++++|-.+|.||+
T Consensus 9 ~etA~~KVr~AEdaWNs 25 (143)
T PF07080_consen 9 RETAIQKVRAAEDAWNS 25 (143)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccc
Confidence 47789999999999996
No 31
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=26.27 E-value=91 Score=23.41 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHhhhhcC-hHHHHHHHHHHHH
Q psy7132 67 PWNSIISGAATGGILAARNG-VPAMAGSALIGAF 99 (103)
Q Consensus 67 ~~N~~~aG~~tGa~~~~~~g-~~~~~~~~~~g~~ 99 (103)
.-+..+ |+.+|++.+..-| |-..+.++++|++
T Consensus 40 ~~~~~~-g~~~ga~~g~~~gg~~G~~~G~~~G~~ 72 (239)
T TIGR03789 40 DQEALI-GLGSGALLGALVGGPVGAIIGGITGGL 72 (239)
T ss_pred ccchhh-hHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 334444 6677888775544 6555556666654
No 32
>PLN03242 diacylglycerol o-acyltransferase; Provisional
Probab=25.82 E-value=57 Score=26.55 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=13.3
Q ss_pred HHHHhHhhhhh--cc---CChHHHH
Q psy7132 52 STIDCSLVYVR--KK---EDPWNSI 71 (103)
Q Consensus 52 s~~~~~~~~~R--~k---~D~~N~~ 71 (103)
+..++..|-.| ++ +||||+.
T Consensus 277 ~~LN~~AEltrFgDR~FY~DWWNs~ 301 (410)
T PLN03242 277 LWLNIVAELLCFGDREFYKDWWNAS 301 (410)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccC
Confidence 44455567777 33 8999974
No 33
>PLN02401 diacylglycerol o-acyltransferase
Probab=22.97 E-value=70 Score=26.36 Aligned_cols=20 Identities=20% Similarity=0.347 Sum_probs=13.2
Q ss_pred HHHHhHhhhhh--cc---CChHHHH
Q psy7132 52 STIDCSLVYVR--KK---EDPWNSI 71 (103)
Q Consensus 52 s~~~~~~~~~R--~k---~D~~N~~ 71 (103)
+..++..|-.| ++ +||||+.
T Consensus 302 ~~LN~~AEltrFgDR~FY~DWWNs~ 326 (446)
T PLN02401 302 LWLNILAELLRFGDREFYKDWWNAK 326 (446)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhccC
Confidence 44455667777 33 8999974
No 34
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.59 E-value=58 Score=18.98 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=14.3
Q ss_pred HHHhHhhhhh-ccCChHHHH
Q psy7132 53 TIDCSLVYVR-KKEDPWNSI 71 (103)
Q Consensus 53 ~~~~~~~~~R-~k~D~~N~~ 71 (103)
-.+..++.+| .++|+.|.+
T Consensus 8 ~~~~~~~~lR~~RHD~~NhL 27 (62)
T PF14689_consen 8 ELEELIDSLRAQRHDFLNHL 27 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 4566778888 479999974
No 35
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=21.08 E-value=2e+02 Score=21.43 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=33.6
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHH
Q psy7132 33 IKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGA 75 (103)
Q Consensus 33 ~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~ 75 (103)
+-.+....=..||-++..|+.+..=..++|.|.|.+--.+-..
T Consensus 16 i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~y 58 (219)
T PF06730_consen 16 IQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDY 58 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence 4445556668999999999999999999999988765444333
No 36
>PF06242 DUF1013: Protein of unknown function (DUF1013); InterPro: IPR010421 This is a family of uncharacterised proteins found in Proteobacteria.
Probab=20.43 E-value=83 Score=21.93 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=35.1
Q ss_pred HhhhhCCcc-chhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHH
Q psy7132 13 KGFRNAPSG-MNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNS 70 (103)
Q Consensus 13 ~g~~~~p~~-~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~ 70 (103)
+|.|.+|.. .+.|-..++= ..++-|.+ .=+-+.=+-..+...++.+|.+. +||+
T Consensus 57 kg~rYTPvskRqDrPdaI~w-lvk~hPel--~DaQI~kLiGTTK~TI~~IR~rt-HWN~ 111 (140)
T PF06242_consen 57 KGPRYTPVSKRQDRPDAIAW-LVKNHPEL--SDAQIAKLIGTTKPTIEAIRDRT-HWNS 111 (140)
T ss_pred cCCCCCccccccCChHHHHH-HHhcCCcc--cHHHHHHHhcCcHHHHHHHhccc-cccc
Confidence 345666654 3344444444 55556655 34567777788999999999987 6775
No 37
>TIGR02662 dinitro_DRAG ADP-ribosyl-[dinitrogen reductase] hydrolase. Members of this family are the enzyme ADP-ribosyl-[dinitrogen reductase] hydrolase (EC 3.2.2.24), better known as Dinitrogenase Reductase Activating Glycohydrolase, DRAG. This enzyme reverses a regulatory inactivation of dinitrogen reductase caused by the action of NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase (EC 2.4.2.37) (DRAT). This enzyme is restricted to nitrogen-fixing bacteria and belongs to the larger family of ADP-ribosylglycohydrolases described by Pfam model pfam03747.
Probab=20.12 E-value=60 Score=24.25 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=22.2
Q ss_pred chhHhhHHHHHHhhhhCCccchhhhhh
Q psy7132 2 GLIGGALFHGIKGFRNAPSGMNRRFLG 28 (103)
Q Consensus 2 G~~~G~~~g~~~g~~~~p~~~~~r~~~ 28 (103)
|++.|++.|...|+..-|+.|++++..
T Consensus 243 aai~GaL~Ga~~G~~~IP~~w~~~l~~ 269 (287)
T TIGR02662 243 GAIAGMLAGATYGVEGIPPRWLKKLDR 269 (287)
T ss_pred HHHHHHHHHHHhCcccCCHHHHHHHHH
Confidence 678899999999998888887776653
No 38
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=20.09 E-value=1.1e+02 Score=24.01 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=39.6
Q ss_pred hhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHH
Q psy7132 24 RRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIIS 73 (103)
Q Consensus 24 ~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~a 73 (103)
+.+.+.++.+...++.++...|+ -.+---++..+++++.+-|.+|...-
T Consensus 71 dqlVq~lr~Ia~nA~gyAF~LAL-~t~~p~~~~~~~~lq~~~~~lN~~~~ 119 (361)
T PF06122_consen 71 DQLVQMLRNIASNAPGYAFQLAL-QTLCPQCGNIMDKLQKIAQALNQMNI 119 (361)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHHHhhhh
Confidence 88999999999999988888765 45566778888999998888887643
No 39
>KOG1360|consensus
Probab=20.07 E-value=23 Score=29.31 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=41.1
Q ss_pred hhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHHhhhhcChHHHHHHHHH
Q psy7132 24 RRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALI 96 (103)
Q Consensus 24 ~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~~~~~~g~~~~~~~~~~ 96 (103)
+| .+++..+---.+.+++.|+.+|+--+.+..+++.+| +..+|++ ++.-+++++.++.+
T Consensus 356 er-dGvm~kvDiIsGTLgKafGcVGGYIAat~~LvDmiR-------SyAaGFI------FTTSLPP~vl~GAl 414 (570)
T KOG1360|consen 356 ER-DGVMHKVDIISGTLGKAFGCVGGYIAATRKLVDMIR-------SYAAGFI------FTTSLPPMVLAGAL 414 (570)
T ss_pred cc-CCcchhhhhcccchhhhcccccceehhhhhHHHHHH-------HhcCceE------EecCCChHHHHhHH
Confidence 44 456666666678899999999998888888877666 4555655 66665555554443
Done!