Query psy7132
Match_columns 103
No_of_seqs 102 out of 657
Neff 6.7
Searched_HMMs 13730
Date Fri Aug 16 19:00:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7132.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7132hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t5ja_ a.209.1.1 (A:) Hypothe 26.9 9.7 0.00071 25.3 1.0 25 2-26 258-282 (301)
2 d2imja1 d.17.4.23 (A:5-159) Hy 22.0 7.3 0.00053 24.8 -0.4 17 54-70 12-28 (155)
3 d2o35a1 a.293.1.1 (A:2-80) Hyp 13.8 39 0.0028 18.9 1.5 19 52-70 14-32 (79)
4 d2oo2a1 a.8.11.1 (A:1-75) Hypo 12.1 52 0.0038 18.2 1.7 13 61-73 43-55 (75)
5 d1vpua_ g.34.1.1 (A:) HIV-1 VP 11.5 44 0.0032 16.7 1.1 16 54-69 3-19 (45)
6 d1y02a1 a.140.2.1 (A:71-114) R 10.2 27 0.0019 17.5 -0.1 14 59-72 26-39 (44)
7 d1pq1a_ f.1.4.1 (A:) Apoptosis 10.1 2.1E+02 0.015 18.0 5.9 51 18-72 115-167 (196)
8 d3bpya1 a.4.5.14 (A:93-177) Af 9.0 1E+02 0.0076 17.0 2.3 23 49-71 30-58 (85)
9 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 8.9 96 0.007 16.7 2.1 22 50-71 22-44 (75)
10 d2p06a1 a.204.1.3 (A:1-84) Hyp 8.3 66 0.0048 17.5 1.1 7 63-69 56-62 (84)
No 1
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=26.87 E-value=9.7 Score=25.32 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=20.6
Q ss_pred chhHhhHHHHHHhhhhCCccchhhh
Q psy7132 2 GLIGGALFHGIKGFRNAPSGMNRRF 26 (103)
Q Consensus 2 G~~~G~~~g~~~g~~~~p~~~~~r~ 26 (103)
+++.|++.|...|...-|..|++++
T Consensus 258 aai~Gal~GA~~G~~~IP~~w~~~l 282 (301)
T d1t5ja_ 258 ASMYGAMAGAYYGFKNIPKEWIDGL 282 (301)
T ss_dssp HHHHHHHHHHHHCGGGSCHHHHHTS
T ss_pred HHHHHHHHHHHhChhcCCHHHHHHh
Confidence 5789999999999999998765544
No 2
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=22.05 E-value=7.3 Score=24.85 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=14.6
Q ss_pred HHhHhhhhhccCChHHH
Q psy7132 54 IDCSLVYVRKKEDPWNS 70 (103)
Q Consensus 54 ~~~~~~~~R~k~D~~N~ 70 (103)
.|.+.+++|-.+|.||+
T Consensus 12 ~etA~~KVr~AEdaWNs 28 (155)
T d2imja1 12 RESAIEKIRLAEDGWNS 28 (155)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 36788999999999996
No 3
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=13.80 E-value=39 Score=18.95 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=15.6
Q ss_pred HHHHhHhhhhhccCChHHH
Q psy7132 52 STIDCSLVYVRKKEDPWNS 70 (103)
Q Consensus 52 s~~~~~~~~~R~k~D~~N~ 70 (103)
+.++.+++++|.+.|.-|=
T Consensus 14 aaFrrL~~HL~~r~dVQNI 32 (79)
T d2o35a1 14 AVFRRLLEHLRERSDVQNI 32 (79)
T ss_dssp HHHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHHhCccchhh
Confidence 4678899999999888773
No 4
>d2oo2a1 a.8.11.1 (A:1-75) Hypothetical protein AF1782 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=12.07 E-value=52 Score=18.15 Aligned_cols=13 Identities=15% Similarity=0.031 Sum_probs=10.1
Q ss_pred hhccCChHHHHHH
Q psy7132 61 VRKKEDPWNSIIS 73 (103)
Q Consensus 61 ~R~k~D~~N~~~a 73 (103)
+..|.|..|++.+
T Consensus 43 fl~~gD~v~A~~~ 55 (75)
T d2oo2a1 43 FLEKGDLVRAFEC 55 (75)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHCCCHHHHHHH
Confidence 3478999999864
No 5
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=11.46 E-value=44 Score=16.71 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=10.1
Q ss_pred HHhHhhhhhcc-CChHH
Q psy7132 54 IDCSLVYVRKK-EDPWN 69 (103)
Q Consensus 54 ~~~~~~~~R~k-~D~~N 69 (103)
++.+++++|++ +|.=|
T Consensus 3 IdrLi~RIrERAEDSGN 19 (45)
T d1vpua_ 3 IDRLIDRITERAEDSGN 19 (45)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcccCCC
Confidence 46677888865 55444
No 6
>d1y02a1 a.140.2.1 (A:71-114) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.20 E-value=27 Score=17.47 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=9.3
Q ss_pred hhhhccCChHHHHH
Q psy7132 59 VYVRKKEDPWNSII 72 (103)
Q Consensus 59 ~~~R~k~D~~N~~~ 72 (103)
+.-|+|||.+|=++
T Consensus 26 ~~CrEKedLV~LVl 39 (44)
T d1y02a1 26 EMCREKEELVLLVL 39 (44)
T ss_dssp TTCCSHHHHHHHHH
T ss_pred hhhhhHHHHHHHHH
Confidence 34577888877654
No 7
>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.07 E-value=2.1e+02 Score=17.98 Aligned_cols=51 Identities=18% Similarity=0.104 Sum_probs=28.5
Q ss_pred CCccchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhcc--CChHHHHH
Q psy7132 18 APSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKK--EDPWNSII 72 (103)
Q Consensus 18 ~p~~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k--~D~~N~~~ 72 (103)
+|....+.+..+.+++.+.+. +|+-+-.+|++.-.+..+...+ +|..+.++
T Consensus 115 t~~~a~~~F~~V~~elF~dgi----nWGRIVal~~F~~~la~~~~~~~~~~~v~~I~ 167 (196)
T d1pq1a_ 115 TPGTAYQSFEQVVNELFRDGV----NWGRIVAFFSFGGALCVESVDKEMQVLVSRIA 167 (196)
T ss_dssp CTTTHHHHHHHHHHHHTTTCC----CHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCccHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 344445666666666666554 6666666666655555544433 45555443
No 8
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.04 E-value=1e+02 Score=16.97 Aligned_cols=23 Identities=26% Similarity=0.331 Sum_probs=13.6
Q ss_pred HHHHHHHhHhhhhhccCC------hHHHH
Q psy7132 49 AMFSTIDCSLVYVRKKED------PWNSI 71 (103)
Q Consensus 49 ~~fs~~~~~~~~~R~k~D------~~N~~ 71 (103)
-+|..++.-...+|.+.| |-|++
T Consensus 30 eIY~~i~~~fPyyr~~~~~~~~~gWkNSI 58 (85)
T d3bpya1 30 QIYEWMVRTVPYFKDKGDSNSSAGWKNSI 58 (85)
T ss_dssp HHHHHHHHHCGGGTTCTTCCTTSHHHHHH
T ss_pred HHHHHHHHhChhhhccCcccccccchhhH
Confidence 455566666666665543 66664
No 9
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.85 E-value=96 Score=16.68 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=11.3
Q ss_pred HHHHHHhHhhhhhc-cCChHHHH
Q psy7132 50 MFSTIDCSLVYVRK-KEDPWNSI 71 (103)
Q Consensus 50 ~fs~~~~~~~~~R~-k~D~~N~~ 71 (103)
+|..++.-...+|. +++|-|++
T Consensus 22 Iy~~i~~~fpy~r~~~~gWkNSI 44 (75)
T d1kq8a_ 22 INEYLMGKFPFFRGSYTGWRNSV 44 (75)
T ss_dssp HHHHHHHHCTTGGGTCSCCHHHH
T ss_pred HHHHHHHhCcccccCCccchhHh
Confidence 34444444444553 46677775
No 10
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.28 E-value=66 Score=17.46 Aligned_cols=7 Identities=57% Similarity=0.345 Sum_probs=5.5
Q ss_pred ccCChHH
Q psy7132 63 KKEDPWN 69 (103)
Q Consensus 63 ~k~D~~N 69 (103)
+|+||-|
T Consensus 56 ekedwen 62 (84)
T d2p06a1 56 EKEDWEN 62 (84)
T ss_dssp HTTCHHH
T ss_pred HHHHHHH
Confidence 5788887
Done!