RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7132
(103 letters)
>gnl|CDD|130053 TIGR00980, 3a0801so1tim17, mitochondrial import inner membrane
translocase subunit tim17. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 170
Score = 130 bits (329), Expect = 3e-40
Identities = 59/101 (58%), Positives = 71/101 (70%), Gaps = 2/101 (1%)
Query: 1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
MG IGG++F KGFRN+P G G IK ++P+L GNFAVWG +FSTIDC++V
Sbjct: 23 MGTIGGSIFQAFKGFRNSPKGEKLV--GAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVA 80
Query: 61 VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
+RKKEDPWNSIISG TG LA R G AM GSA++GA L
Sbjct: 81 IRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACIL 121
>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase
subunit tim17; Provisional.
Length = 164
Score = 121 bits (306), Expect = 8e-37
Identities = 50/101 (49%), Positives = 68/101 (67%), Gaps = 2/101 (1%)
Query: 1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
MG IGG ++H +KG RN+P G RF G +++++PIL GNFA+WG +FST DC+L Y
Sbjct: 25 MGCIGGFIWHFLKGMRNSPKG--ERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQY 82
Query: 61 VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
+R KED WN+I SG TGG+LA R G + +A+ G L
Sbjct: 83 LRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILL 123
>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family. The pre-protein
translocase of the mitochondrial outer membrane (Tom)
allows the import of pre-proteins from the cytoplasm.
Tom forms a complex with a number of proteins, including
Tim17. Tim17 and Tim23 are thought to form the
translocation channel of the inner membrane. This family
includes Tim17, Tim22 and Tim23. This family also
includes Pmp24 a peroxisomal protein. The involvement of
this domain in the targeting of PMP24 remains to be
proved. PMP24 was known as Pmp27 in.
Length = 128
Score = 90.0 bits (224), Expect = 8e-25
Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 1 MGLIGGALFHGIKGFRNAP--SGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSL 58
MG + G F G NA + R G+ ++ P NFAV+G ++S I+C+L
Sbjct: 16 MGAVYGGFFGAPHGLVNALRSGPLKLRLNGVLNATGRRGPSHGNNFAVFGGLYSGIECAL 75
Query: 59 VYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAF 99
+R KEDPWNSII+GA TG +L R G A A A +GA
Sbjct: 76 EKLRGKEDPWNSIIAGALTGAVLGLRGGPKAAAVGAAVGAA 116
>gnl|CDD|227883 COG5596, TIM22, Mitochondrial import inner membrane translocase,
subunit TIM22 [Posttranslational modification, protein
turnover, chaperones].
Length = 191
Score = 56.4 bits (136), Expect = 3e-11
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFA-VWGAMFSTIDCSLV 59
IG + G+KGFR G + F +L NF VWG +FSTIDC+
Sbjct: 44 YSCIGKSALSGLKGFRL--GGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPF 101
Query: 60 YVRKKEDPWNSIISGAATGGILAARNGV 87
++ KE N+ G TG L +
Sbjct: 102 RLQLKEQLNNAGKRGFFTGKNLGVLGLI 129
Score = 42.5 bits (100), Expect = 4e-06
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 36 KSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMA-GSA 94
+ N V G +++ I+ + +R K D N+I +GA TG LA+ G AM G A
Sbjct: 115 RGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGA 174
Query: 95 LIGAF 99
AF
Sbjct: 175 GFAAF 179
>gnl|CDD|130056 TIGR00983, 3a0801s02tim23, mitochondrial import inner membrane
translocase subunit tim23. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 149
Score = 44.8 bits (106), Expect = 4e-07
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 2 GLIGGALFHGIKGFRNAPSG--MNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLV 59
GL GAL G + S R + + ++ P + +++ I+ +
Sbjct: 45 GLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIE 104
Query: 60 YVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGA 98
R K D +NS+ +GA TG + + G+ MA S +GA
Sbjct: 105 ATRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGA 143
>gnl|CDD|226941 COG4575, ElaB, Uncharacterized conserved protein [Function
unknown].
Length = 104
Score = 27.7 bits (62), Expect = 0.61
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 54 IDCSLVYVRKKEDPWNSIISGAATG---GILAAR 84
D + YVR E+PW + AA G G+L +R
Sbjct: 72 ADATDDYVR--ENPWQGVGVAAAVGLLLGLLLSR 103
>gnl|CDD|182432 PRK10404, PRK10404, hypothetical protein; Provisional.
Length = 101
Score = 27.1 bits (60), Expect = 0.92
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 54 IDCSLVYVRKKEDPWNSIISGAATG---GILAAR 84
+ + YV +K PW I GAA G G+L AR
Sbjct: 69 VYRADDYVHEK--PWQGIGVGAAVGLVLGLLLAR 100
>gnl|CDD|182323 PRK10236, PRK10236, hypothetical protein; Provisional.
Length = 237
Score = 27.6 bits (61), Expect = 1.0
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 71 IISGAATGGIL-AARNGVPAMAGSA 94
++ GA GG + AA NGV A++GSA
Sbjct: 190 LLRGAGLGGPVGAALNGVKAVSGSA 214
>gnl|CDD|214832 smart00817, Amelin, Ameloblastin precursor (Amelin). This family
consists of several mammalian Ameloblastin precursor
(Amelin) proteins. Matrix proteins of tooth enamel
consist mainly of amelogenin but also of non-amelogenin
proteins, which, although their volumetric percentage is
low, have an important role in enamel mineralisation.
One of the non-amelogenin proteins is ameloblastin, also
known as amelin and sheathlin. Ameloblastin (AMBN) is
one of the enamel sheath proteins which is though to
have a role in determining the prismatic structure of
growing enamel crystals.
Length = 411
Score = 27.2 bits (60), Expect = 1.8
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 6 GALFHGIKGFRNAPSGMNRR-FLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKK 64
GALF G+ G R GM + + T++ SP+ A G S + +
Sbjct: 240 GALFPGLGGMRPGLRGMPQNPAMQGDFTLEDDSPVAATKGPEKGEGG--AQGSPIPEAQG 297
Query: 65 EDPWNSI----ISGAATGGILAARNG-VPAMA 91
DP N + GG+LA N +P +A
Sbjct: 298 VDPENPALLSEGAPGGHGGLLAFPNDNIPNLA 329
>gnl|CDD|130283 TIGR01216, ATP_synt_epsi, ATP synthase, F1 epsilon subunit (delta
in mitochondria). This model describes one of the five
types of subunits in the F1 part of F1/F0 ATP
synthases. Members of this family are designated
epsilon in bacterial and chloroplast systems but
designated delta in mitochondria, where the counterpart
of the bacterial delta subunit is designated OSCP. In a
few cases (Propionigenium modestum, Acetobacterium
woodii) scoring above the trusted cutoff and designated
here as exceptions, Na+ replaces H+ for translocation
[Energy metabolism, ATP-proton motive force
interconversion].
Length = 130
Score = 26.1 bits (58), Expect = 2.5
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 50 MFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGV 87
+ + + +V +RK D W I A +GG +
Sbjct: 39 LITALKPGVVRIRKLGDDWEHI---AVSGGFAEVQPDK 73
>gnl|CDD|182259 PRK10132, PRK10132, hypothetical protein; Provisional.
Length = 108
Score = 25.6 bits (56), Expect = 4.2
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 54 IDCSLVYVRKKEDPWNSIISGAATGGILAA 83
+ C+ +VR++ PW S+ + AA G + A
Sbjct: 75 VGCADTFVRER--PWCSVGTAAAVGIFIGA 102
>gnl|CDD|213362 cd12828, TmCorA-like_1, Thermotoga maritima CorA_like subfamily.
This subfamily belongs to the Thermotoga maritima CorA
(TmCorA)-family of the MIT superfamily of essential
membrane proteins involved in transporting divalent
cations (uptake or efflux) across membranes. Members of
this subfamily are found in all three kingdoms of life.
It is functionally diverse subfamily, in addition to the
CorA Co2+ transporter from the hyperthermophilic
Thermotoga maritima, it includes Methanosarcina mazei
CorA which may be involved in transport of copper and/or
other divalent metal ions. Thermotoga maritima CorA
forms funnel-shaped homopentamers, the tip of the funnel
is formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport by a related protein, Saccharomyces cerevisiae
Alr1p. Natural variants in this signature sequence may
be associated with the transport of different divalent
cations. The functional diversity of the MIT superfamily
may also be due to minor structural differences
regulating gating, substrate selection, and transport.
Length = 294
Score = 25.5 bits (57), Expect = 5.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 42 GNFAVWGAMFSTIDCSLVYVRKK 64
G AV G M L+Y ++K
Sbjct: 269 GYPAVLGVMLLIALGMLLYFKRK 291
>gnl|CDD|237732 PRK14498, PRK14498, putative molybdopterin biosynthesis protein
MoeA/LysR substrate binding-domain-containing protein;
Provisional.
Length = 633
Score = 25.6 bits (57), Expect = 6.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 78 GGILAARNGVPAMAGSAL 95
GG++A + G +AG L
Sbjct: 452 GGLMALKRGEADIAGIHL 469
>gnl|CDD|239580 cd03500, SQR_TypeA_SdhD_like, Succinate:quinone oxidoreductase
(SQR) Type A subfamily, Succinate dehydrogenase D
(SdhD)-like subunit; SQR catalyzes the oxidation of
succinate to fumarate coupled to the reduction of
quinone to quinol. Members of this subfamily reduce low
potential quinones such as menaquinone and
thermoplasmaquinone. SQR is also called succinate
dehydrogenase or Complex II, and is part of the citric
acid cycle and the aerobic respiratory chain. SQR is
composed of a flavoprotein catalytic subunit, an
iron-sulfur protein and one or two hydrophobic
transmembrane subunits. Members of this subfamily are
similar to the Thermoplasma acidophilum SQR and are
classified as Type A because they contain two
transmembrane subunits as well as two heme groups.
Although there are no structures available for this
subfamily, the presence of two hemes has been proven
spectroscopically for T. acidophilum. The two membrane
anchor subunits are similar to the SdhD and SdhC
subunits of bacterial SQRs, which contain heme and
quinone binding sites. The two-electron oxidation of
succinate in the flavoprotein active site is coupled to
the two-electron reduction of quinone in the membrane
anchor subunits via electron transport through FAD and
three iron-sulfur centers. The reversible reduction of
quinone is an essential feature of respiration,
allowing transfer of electrons between respiratory
complexes.
Length = 106
Score = 24.5 bits (54), Expect = 7.4
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 7 ALFHGIKGFRNA-----PSGMNRRFLGMTTTI 33
AL HG G RN RR + +
Sbjct: 60 ALLHGGNGLRNILLDYVRRPRLRRAVKGLLYV 91
>gnl|CDD|225552 COG3007, COG3007, Uncharacterized paraquat-inducible protein B
[Function unknown].
Length = 398
Score = 25.1 bits (55), Expect = 7.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 60 YVRK----KEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFY 100
YV+ K P ++ GA++G LAAR G+ IG F+
Sbjct: 30 YVKAAGPIKNGPKKVLVIGASSGYGLAARISAAFGPGADTIGVFF 74
>gnl|CDD|234279 TIGR03607, TIGR03607, patatin-related protein. This bacterial
protein family contains an N-terminal patatin domain,
where patatins are plant storage proteins capable of
phospholipase activity (see pfam01734). Regions of
strong sequence conservation are separated by regions
of significant sequence and length variability. Members
of the family are distributed sporadically among
bacteria. The function is unknown [Unknown function,
General].
Length = 739
Score = 25.1 bits (55), Expect = 7.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 37 SPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGV 87
AG AV+GA+ + L +R + D +ISG + GGI NGV
Sbjct: 40 DEASAGTEAVYGALLELLGAHL-RLRVRVD----VISGTSAGGI----NGV 81
>gnl|CDD|184861 PRK14859, tatA, twin arginine translocase protein A; Provisional.
Length = 63
Score = 23.9 bits (52), Expect = 9.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 4 IGGALFHGIKGFRNAPSG 21
IGG L IK F+ A S
Sbjct: 28 IGGGLGKSIKNFKKATSE 45
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.429
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,422,488
Number of extensions: 461860
Number of successful extensions: 518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 42
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)