RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7132
         (103 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.2 bits (59), Expect = 0.81
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 11/36 (30%)

Query: 61 VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALI 96
          ++K +    S+         L A +  PA+A  A +
Sbjct: 22 LKKLQ---ASLK--------LYADDSAPALAIKATM 46


>2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics,
           protein structure initiative; 1.60A {Thermobifida fusca}
           PDB: 2qvh_A*
          Length = 327

 Score = 26.2 bits (58), Expect = 2.4
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 14/49 (28%)

Query: 61  VRKKEDPWNSIISGAA---------TGGI-----LAARNGVPAMAGSAL 95
           +R+ EDP     + AA          GG+     LA   G+P +  SA+
Sbjct: 182 IRRAEDPLRVRDAEAADVVVLKVQPLGGVRAALRLAEECGLPVVVSSAV 230


>2r01_A Nitroreductase family protein; structural genomics, joint center
           for structural genomics, J protein structure initiative,
           PSI-2; HET: MSE FMN; 1.15A {Chlorobium tepidum tls}
          Length = 210

 Score = 25.8 bits (57), Expect = 2.8
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 16/96 (16%)

Query: 16  RNAPSGMNR---RFLGMTT--TIKQKSPILAGNFAVWGAMFSTIDCS-----LVYVRKKE 65
              PS  NR   RFL +T      +  P L     +                ++  R ++
Sbjct: 47  CYTPSAANRQLLRFLPVTGADMSDKVFPCLKWAGYLEDWPGPEPGERPAAALVMLCRNED 106

Query: 66  DPWNSIISGAATGGI-LAARN-GVPAMAGSALIGAF 99
            P  +  SG A   I L A    +    G  ++ A 
Sbjct: 107 LPGAACDSGIAAQTIMLGAAEKEL----GGCIVAAI 138


>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport
           protein; HET: HEM; 1.30A {Cimex lectularius} SCOP:
           d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
          Length = 282

 Score = 25.6 bits (56), Expect = 3.6
 Identities = 4/28 (14%), Positives = 10/28 (35%)

Query: 58  LVYVRKKEDPWNSIISGAATGGILAARN 85
            VY  +K    N++ +      +   + 
Sbjct: 87  TVYCLEKHLDQNTLKNETIIVTVDDQKK 114


>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered
           Se-Met, structural genomics, putative ribosomal protein,
           PSI; HET: MSE; 1.50A {Escherichia coli} SCOP: c.51.4.1
           PDB: 2q16_A* 2pyu_A*
          Length = 221

 Score = 24.8 bits (55), Expect = 5.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 56  CSLVYVRKKEDPWNSIISGAATGGILAARNG 86
           C LVY+R  EDP   +  G+  G I     G
Sbjct: 142 CVLVYLRHAEDPTPLVCHGSWPGVITREPAG 172


>3m1u_A Putative gamma-D-glutamyl-L-diamino acid endopept; structural
           genomics, joint center for structural genomics; HET: MSE
           MES; 1.75A {Desulfovibrio vulgaris}
          Length = 434

 Score = 25.1 bits (54), Expect = 6.3
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 46  VWGAMFSTIDCS 57
            WG ++   DCS
Sbjct: 293 GWGGLYEDRDCS 304


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.0 bits (54), Expect = 6.7
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 13/77 (16%)

Query: 25  RFLGMTTTIKQKSPILAGNF-AVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAA 83
           +FLG  +++ + S    G F  V     +  +    Y+       N I + AA    L  
Sbjct: 63  KFLGYVSSLVEPSK--VGQFDQVLNLCLTEFENC--YLEG-----NDIHALAAK---LLQ 110

Query: 84  RNGVPAMAGSALIGAFY 100
            N    +    LI  + 
Sbjct: 111 ENDTTLVKTKELIKNYI 127


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,620,194
Number of extensions: 86039
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 15
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)