BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7139
(876 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GK7|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3GK7|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3QDQ|A Chain A, Complex Between 4-Hydroxybutyrate Coa-Transferase From
Clostridium Aminobutyricum And Coa
Length = 448
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 402 ISEIQQGNRVLFRGDIGDPPVL--CTQRQTFQVKEAETSNSLTLIRGLYFPDHPRIKENN 459
+ I+ G+RVLF + +PPVL K S+ +TL +G Y P KEN
Sbjct: 18 VKSIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEY--SKPEYKENF 75
Query: 460 T 460
T
Sbjct: 76 T 76
>pdb|2J63|A Chain A, Crystal Structure Of Ap Endonuclease Lmap From Leishmania
Major
pdb|2J63|B Chain B, Crystal Structure Of Ap Endonuclease Lmap From Leishmania
Major
Length = 467
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 420 PPVLCTQRQTFQVKEAETSNSLTLIRGLYFPDHP 453
P VLC Q V EA+ + +L ++ G F DHP
Sbjct: 180 PDVLCLQETKLNVDEADANATLGVVDGYSFVDHP 213
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 95 ETLGTTEETVNPPTDQ-QCIEMAEEILSQPLNQQWSQMSEETLSQPPNQQCIEMTEETLG 153
+ +GT ++V ++ + I+M L PL Q+W+ + +E P +C+ L
Sbjct: 505 DAIGTLADSVGHHLNKPEYIQM----LMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQ 560
Query: 154 RTEESLCPPSNQQCIEMSVETLG 176
C P Q+C+ + +TL
Sbjct: 561 SGFLPYCEPVYQRCVNLVQKTLA 583
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 95 ETLGTTEETVNPPTDQ-QCIEMAEEILSQPLNQQWSQMSEETLSQPPNQQCIEMTEETLG 153
+ +GT ++V ++ + I+M L PL Q+W+ + +E P +C+ L
Sbjct: 543 DAIGTLADSVGHHLNKPEYIQM----LMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQ 598
Query: 154 RTEESLCPPSNQQCIEMSVETLG 176
C P Q+C+ + +TL
Sbjct: 599 SGFLPYCEPVYQRCVNLVQKTLA 621
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 95 ETLGTTEETVNPPTDQ-QCIEMAEEILSQPLNQQWSQMSEETLSQPPNQQCIEMTEETLG 153
+ +GT ++V ++ + I+M L PL Q+W+ + +E P +C+ L
Sbjct: 518 DAIGTLADSVGHHLNKPEYIQM----LMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQ 573
Query: 154 RTEESLCPPSNQQCIEMSVETLG 176
C P Q+C+ + +TL
Sbjct: 574 SGFLPYCEPVYQRCVNLVQKTLA 596
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 120 LSQPLNQQWSQMSEETLSQPPNQQCIEMTEETLGRTEESLCPPSNQQCIEMSVETLG 176
L PL Q+W+ + +E P +C+ L C P Q+C+ + +TL
Sbjct: 565 LXPPLIQKWNXLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLA 621
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,175,069
Number of Sequences: 62578
Number of extensions: 932055
Number of successful extensions: 1604
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1583
Number of HSP's gapped (non-prelim): 24
length of query: 876
length of database: 14,973,337
effective HSP length: 107
effective length of query: 769
effective length of database: 8,277,491
effective search space: 6365390579
effective search space used: 6365390579
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)